BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0050.p
         (180 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A0AG50.1 A0AG50_LISW6 Complete genome                                 140   5e-32
A6LQL1.1 A6LQL1_CLOB8 Transcriptional regulator, DeoR family          130   4e-29
C1P8I2.1 C1P8I2_BACCO Transcriptional regulator, DeoR family          129   1e-28
B7AY24.1 B7AY24_9FIRM Putative uncharacterized protein                122   9e-27
A9KN66.1 A9KN66_CLOPH Transcriptional regulator, DeoR family          115   1e-24

>A0AG50.1 A0AG50_LISW6 Complete genome
          Length = 255

 Score =  140 bits (353), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 92/119 (77%), Gaps = 1/119 (0%)

Query: 1   VHQDKRVLVSDLSRMFEVTEETIRRDLEKLEKDGILSRTYGGAMLNRHTNEDLPFVTRNA 60
           +++DK+  VS L+  F+VTEETIRRD EK+EK+GI++RTYGGA LN HTNEDLP+ TRNA
Sbjct: 17  LYRDKKAFVSTLAEEFKVTEETIRRDFEKMEKEGIVTRTYGGATLNLHTNEDLPYQTRNA 76

Query: 61  LNTDMKRNIALKALDLINDGDTLMVDPSSTAFEFLKLLG-NKNNLTVITNSINILHEFA 118
           +N + K+NIA K  +L++DGDT+M D SST  E LK +   K+ +T+ITNSI  L EF+
Sbjct: 77  INIEAKKNIASKMNELLHDGDTIMADTSSTVLESLKEIQLQKSKITLITNSIIALQEFS 135


>A6LQL1.1 A6LQL1_CLOB8 Transcriptional regulator, DeoR family
          Length = 252

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 88/116 (75%), Gaps = 1/116 (0%)

Query: 3   QDKRVLVSDLSRMFEVTEETIRRDLEKLEKDGILSRTYGGAMLN-RHTNEDLPFVTRNAL 61
           ++K+V VS LS+ FEVTEETIRRDLEKLE  G+++R+YGGA+LN   TNED+PF  R+  
Sbjct: 16  KEKKVYVSKLSKEFEVTEETIRRDLEKLELQGVVTRSYGGAILNVDKTNEDVPFYKRSRT 75

Query: 62  NTDMKRNIALKALDLINDGDTLMVDPSSTAFEFLKLLGNKNNLTVITNSINILHEF 117
           N + K+ IALKA++ +    T++ D SST FE LKL+ N+N++TVITNS+ +L E 
Sbjct: 76  NIESKQYIALKAIEFVKGSSTIVADCSSTVFEALKLIRNRNDVTVITNSVEVLQEL 131


>C1P8I2.1 C1P8I2_BACCO Transcriptional regulator, DeoR family
          Length = 268

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 90/119 (75%), Gaps = 1/119 (0%)

Query: 1   VHQDKRVLVSDLSRMFEVTEETIRRDLEKLEKDGILSRTYGGAMLNRHTNEDLPFVTRNA 60
           ++++K+V V++L++ F+VTEETIRRDLEKLEK+GI++RTYGGA+LN HTNEDLP+ TR  
Sbjct: 30  LYREKKVYVANLAKEFQVTEETIRRDLEKLEKEGIVTRTYGGAVLNLHTNEDLPYQTRFT 89

Query: 61  LNTDMKRNIALKALDLINDGDTLMVDPSSTAFEFLKLLG-NKNNLTVITNSINILHEFA 118
           +N + K+NIA K   LI+DG+T++ D SST  E LK L   K  L V+TNS   L E A
Sbjct: 90  VNMEAKQNIAGKLQPLISDGNTIVADASSTVLEALKELNRTKEGLVVLTNSAIALSELA 148


>B7AY24.1 B7AY24_9FIRM Putative uncharacterized protein
          Length = 251

 Score =  122 bits (307), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 86/117 (73%)

Query: 1   VHQDKRVLVSDLSRMFEVTEETIRRDLEKLEKDGILSRTYGGAMLNRHTNEDLPFVTRNA 60
           +  D++V VSDL+R F+VTEETIRRDLEKLE   +L R+YGGA+L   T+EDL +  R+ 
Sbjct: 14  IRLDRKVYVSDLARAFKVTEETIRRDLEKLEAQDLLRRSYGGAILAESTSEDLSYKRRST 73

Query: 61  LNTDMKRNIALKALDLINDGDTLMVDPSSTAFEFLKLLGNKNNLTVITNSINILHEF 117
           +N+++K  IA KA  LI DGDT+M+D S+T    L+ L  + ++T+ITNSI ++++F
Sbjct: 74  INSEIKLAIAEKAARLIQDGDTIMMDSSTTCQALLQRLKGQKDITIITNSIRLMNDF 130


>A9KN66.1 A9KN66_CLOPH Transcriptional regulator, DeoR family
          Length = 257

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 83/118 (70%)

Query: 1   VHQDKRVLVSDLSRMFEVTEETIRRDLEKLEKDGILSRTYGGAMLNRHTNEDLPFVTRNA 60
           + ++ +V+VS+LS++F+V+EETIRRDLEKL+K+G+  +TYGGA+LN + N +LPF  R  
Sbjct: 14  LQKENKVVVSELSQLFDVSEETIRRDLEKLDKEGLAIKTYGGAVLNENNNAELPFTVREN 73

Query: 61  LNTDMKRNIALKALDLINDGDTLMVDPSSTAFEFLKLLGNKNNLTVITNSINILHEFA 118
            N   K+ IA     LI D  T+M+D SSTA    + + +K N+T+ITNSI IL E A
Sbjct: 74  TNVSQKQRIAEIVAGLIKDDSTIMLDASSTALFVARNIKHKKNITLITNSIEILVELA 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 910,617,425
Number of extensions: 31029125
Number of successful extensions: 104165
Number of sequences better than 1.0e-05: 2999
Number of HSP's gapped: 102972
Number of HSP's successfully gapped: 2999
Length of query: 180
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 53
Effective length of database: 1,864,227,298
Effective search space: 98804046794
Effective search space used: 98804046794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)