BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0046.p (272 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q81AJ5.1 Q81AJ5_BACCR FdhD protein (FdsC) 362 2e-98 C2YDH3.1 C2YDH3_BACCE Protein fdhD 362 2e-98 C2T421.1 C2T421_BACCE Protein fdhD 362 2e-98 C2RR73.1 C2RR73_BACCE Protein fdhD 362 2e-98 Q637Q3.1 Q637Q3_BACCZ Formate dehydrogenase-related protein 362 2e-98 >Q81AJ5.1 Q81AJ5_BACCR FdhD protein (FdsC) Length = 265 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/255 (66%), Positives = 202/255 (79%) Query: 11 IIRYRSGQLSREEDSIVAEQPVTIKINGEEFVTLVCTPEYIEDMVVGYLASEGIIRGMQD 70 I RY G + EDSIV E PVTIK+NG+EFVT+V TPEYIEDMV+G+LASEGIIR +D Sbjct: 10 IFRYEQGAIKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYED 69 Query: 71 IRQLWTQEEEGFVHVTTDRWNPLHRQLFAKRYVTSCCGSSRHGFVYVNDARTAKSITGVH 130 I +W QE+EGFVHVTT + NP + Q+ KRY+TSCCG SR GFV+ NDA +AK + GVH Sbjct: 70 IDSVWVQEKEGFVHVTTTKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMKGVH 129 Query: 131 TLLTFDDCFRLMDEVLSGAELFHRTGGVHCAALCNPEGIVLSRSDIGRHNALDKIYGHCL 190 + DDCFRLM E+ A+ FHRTGGVH AALC+ GI+LSR DIGRHNALDKIYG+CL Sbjct: 130 VQVAADDCFRLMKEMQQSADTFHRTGGVHNAALCDVNGIILSRMDIGRHNALDKIYGYCL 189 Query: 191 RTGIDPGNQIIAFSGRISSEILLKAAKIGCEIILSKSAPTGLAVELAEQLGITAVGFIRQ 250 R I ++II FSGRISSEILLK AKIGCEIILSKSAPT LA++LAE LGIT +GFIR Sbjct: 190 RNDISIKDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEDLGITTIGFIRN 249 Query: 251 NSCNVYSHPERISDL 265 +S NVY+HPER+ ++ Sbjct: 250 HSLNVYTHPERVLNI 264 >C2YDH3.1 C2YDH3_BACCE Protein fdhD Length = 265 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/255 (66%), Positives = 202/255 (79%) Query: 11 IIRYRSGQLSREEDSIVAEQPVTIKINGEEFVTLVCTPEYIEDMVVGYLASEGIIRGMQD 70 I RY G + EDSIV E PVTIK+NG+EFVT+V TPEYIEDMV+G+LASEGIIR +D Sbjct: 10 IFRYEQGAIKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYED 69 Query: 71 IRQLWTQEEEGFVHVTTDRWNPLHRQLFAKRYVTSCCGSSRHGFVYVNDARTAKSITGVH 130 I +W QE+EGFVHVTT + NP + Q+ KRY+TSCCG SR GFV+ NDA +AK + GVH Sbjct: 70 IDSVWVQEKEGFVHVTTTKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMKGVH 129 Query: 131 TLLTFDDCFRLMDEVLSGAELFHRTGGVHCAALCNPEGIVLSRSDIGRHNALDKIYGHCL 190 + DDCFRLM E+ A+ FHRTGGVH AALC+ GI+LSR DIGRHNALDKIYG+CL Sbjct: 130 VQVAADDCFRLMKEMQQSADTFHRTGGVHNAALCDVNGIILSRMDIGRHNALDKIYGYCL 189 Query: 191 RTGIDPGNQIIAFSGRISSEILLKAAKIGCEIILSKSAPTGLAVELAEQLGITAVGFIRQ 250 R I ++II FSGRISSEILLK AKIGCEIILSKSAPT LA++LAE LGIT +GFIR Sbjct: 190 RNDISIKDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEDLGITTIGFIRN 249 Query: 251 NSCNVYSHPERISDL 265 +S NVY+HPER+ ++ Sbjct: 250 HSLNVYTHPERVLNI 264 >C2T421.1 C2T421_BACCE Protein fdhD Length = 265 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/255 (66%), Positives = 202/255 (79%) Query: 11 IIRYRSGQLSREEDSIVAEQPVTIKINGEEFVTLVCTPEYIEDMVVGYLASEGIIRGMQD 70 I RY G + EDSIV E PVTIK+NG+EFVT+V TPEYIEDMV+G+LASEGIIR +D Sbjct: 10 IFRYEQGAIKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYED 69 Query: 71 IRQLWTQEEEGFVHVTTDRWNPLHRQLFAKRYVTSCCGSSRHGFVYVNDARTAKSITGVH 130 I +W QE+EGFVHVTT + NP + Q+ KRY+TSCCG SR GFV+ NDA +AK + GVH Sbjct: 70 IDSVWVQEKEGFVHVTTTKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMKGVH 129 Query: 131 TLLTFDDCFRLMDEVLSGAELFHRTGGVHCAALCNPEGIVLSRSDIGRHNALDKIYGHCL 190 + DDCFRLM E+ A+ FHRTGGVH AALC+ GI+LSR DIGRHNALDKIYG+CL Sbjct: 130 VQVAADDCFRLMKEMQQSADTFHRTGGVHNAALCDVNGIILSRMDIGRHNALDKIYGYCL 189 Query: 191 RTGIDPGNQIIAFSGRISSEILLKAAKIGCEIILSKSAPTGLAVELAEQLGITAVGFIRQ 250 R I ++II FSGRISSEILLK AKIGCEIILSKSAPT LA++LAE LGIT +GFIR Sbjct: 190 RNDISIKDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEDLGITTIGFIRN 249 Query: 251 NSCNVYSHPERISDL 265 +S NVY+HPER+ ++ Sbjct: 250 HSLNVYTHPERVLNI 264 >C2RR73.1 C2RR73_BACCE Protein fdhD Length = 265 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/255 (66%), Positives = 202/255 (79%) Query: 11 IIRYRSGQLSREEDSIVAEQPVTIKINGEEFVTLVCTPEYIEDMVVGYLASEGIIRGMQD 70 I RY G + EDSIV E PVTIK+NG+EFVT+V TPEYIEDMV+G+LASEGIIR +D Sbjct: 10 IFRYEQGAIKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYED 69 Query: 71 IRQLWTQEEEGFVHVTTDRWNPLHRQLFAKRYVTSCCGSSRHGFVYVNDARTAKSITGVH 130 I +W QE+EGFVHVTT + NP + Q+ KRY+TSCCG SR GFV+ NDA +AK + GVH Sbjct: 70 IDSVWVQEKEGFVHVTTTKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKKMKGVH 129 Query: 131 TLLTFDDCFRLMDEVLSGAELFHRTGGVHCAALCNPEGIVLSRSDIGRHNALDKIYGHCL 190 + DDCFRLM E+ A+ FHRTGGVH AALC+ GI+LSR DIGRHNALDKIYG+CL Sbjct: 130 VQVAADDCFRLMKEMQQSADTFHRTGGVHNAALCDVNGIILSRMDIGRHNALDKIYGYCL 189 Query: 191 RTGIDPGNQIIAFSGRISSEILLKAAKIGCEIILSKSAPTGLAVELAEQLGITAVGFIRQ 250 R I ++II FSGRISSEILLK AKIGCEIILSKSAPT LA++LAE LGIT +GFIR Sbjct: 190 RNDISIKDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEDLGITTIGFIRN 249 Query: 251 NSCNVYSHPERISDL 265 +S NVY+HPER+ ++ Sbjct: 250 HSLNVYTHPERVLNI 264 >Q637Q3.1 Q637Q3_BACCZ Formate dehydrogenase-related protein Length = 265 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 169/255 (66%), Positives = 203/255 (79%) Query: 11 IIRYRSGQLSREEDSIVAEQPVTIKINGEEFVTLVCTPEYIEDMVVGYLASEGIIRGMQD 70 I RY G EDSIV E PVTIK+NG+EFVT+V TPEYIEDMV+G+LASEGIIR +D Sbjct: 10 IFRYEQGAFKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYED 69 Query: 71 IRQLWTQEEEGFVHVTTDRWNPLHRQLFAKRYVTSCCGSSRHGFVYVNDARTAKSITGVH 130 I +W QE+EGFVHVTT + NP + Q+ KRY+TSCCG SR GFV+ NDA +AK+++GVH Sbjct: 70 IDDIWVQEKEGFVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKTMSGVH 129 Query: 131 TLLTFDDCFRLMDEVLSGAELFHRTGGVHCAALCNPEGIVLSRSDIGRHNALDKIYGHCL 190 +T +DCFRLM E+ AE FH TGGVH A+LCN GI+LSR DIGRHNALDKIYG+CL Sbjct: 130 VQVTAEDCFRLMKEMQQSAETFHHTGGVHNASLCNVNGIILSRMDIGRHNALDKIYGYCL 189 Query: 191 RTGIDPGNQIIAFSGRISSEILLKAAKIGCEIILSKSAPTGLAVELAEQLGITAVGFIRQ 250 + I ++II FSGRISSEILLK AKIGCEIILSKSAPT LA++LAE+LGIT +GFIR Sbjct: 190 KNNISIRDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELGITTIGFIRN 249 Query: 251 NSCNVYSHPERISDL 265 S NVY+HPER+ ++ Sbjct: 250 ESLNVYTHPERVLNI 264 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,573,436,475 Number of extensions: 61980414 Number of successful extensions: 132350 Number of sequences better than 1.0e-05: 1020 Number of HSP's gapped: 131047 Number of HSP's successfully gapped: 1025 Length of query: 272 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 139 Effective length of database: 1,807,701,208 Effective search space: 251270467912 Effective search space used: 251270467912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)