BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0043.p (437 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0K4Q1.1 B0K4Q1_THEPX Small GTP-binding protein 498 e-139 B0KBX8.1 B0KBX8_THEP3 Small GTP-binding protein 498 e-139 B9E3M6.1 B9E3M6_CLOK1 Putative uncharacterized protein 495 e-138 A5MZP6.1 A5MZP6_CLOK5 HydF 495 e-138 Q97IJ0.1 Q97IJ0_CLOAB Predicted GTPase with uncharacterized doma... 488 e-136 >B0K4Q1.1 B0K4Q1_THEPX Small GTP-binding protein Length = 408 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/414 (59%), Positives = 303/414 (73%), Gaps = 8/414 (1%) Query: 3 VNDTPRGERAHIAVFGRRNAGKSSLINAFCGQEVSIVSPVSGTTTDPVYRPMELLPAGPV 62 +N TP R HIA+FGRRNAGKSSLINA QEV++VS V+GTTTDPV + ME+LP GPV Sbjct: 1 MNTTPISSRLHIAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPV 60 Query: 63 VLIDTAGLDDTGELGEQRIRQTLQVLKKTDLALLVVDAEAGAGEFERELLQRLAAAGTNV 122 V+IDTAGLDDTGELGE R+++T +VL +TDLA+LV+D G EFE +L+ + V Sbjct: 61 VIIDTAGLDDTGELGELRVKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPV 120 Query: 123 MIVLNKIDKITSDPPSLEERCSQLALRLEAGSSIRLFPVSTMSGSGIGALKRAAADRLAQ 182 + V+NK D S ++R + L+LE L VS + GI ALK + Sbjct: 121 VGVINKKD--LSQYSEEDKRKWEEKLKLE------LIEVSALKKHGIEALKMMLIKKAPY 172 Query: 183 EEQRFRLVGDLLSPGDVAVLVVPIDKAAPKGRLILPQQQAIRDIMECDALAVVTKEQELS 242 +++ +VGDL+ PGD VLV+PIDKAAPKGRLILPQQQ IRDI++ DA+A+VTKE EL Sbjct: 173 DDRELSIVGDLIKPGDFVVLVIPIDKAAPKGRLILPQQQTIRDILDNDAMAIVTKEHELK 232 Query: 243 HTLSRLTGKPRIVITDSQVFLKVQADTPPDVPLTSFSILFARYKGDLPRLVSGARSITRL 302 TL L KP +VITDSQ FLKV ADTP D+PLTSFSILFARYKGDL LV G ++I +L Sbjct: 233 ETLQNLGKKPSLVITDSQAFLKVSADTPKDIPLTSFSILFARYKGDLEELVRGVKAIKKL 292 Query: 303 KDGDRVLIAEACTHHRQSDDIGSVKIPRWLREITGRQLLIDHAAGSDFPADLEQYSLIIH 362 K GD+VLIAE CTHHRQSDDIG VKIPRW+R+I G + D ++G FP +LE+YSLI+H Sbjct: 293 KPGDKVLIAEGCTHHRQSDDIGKVKIPRWIRQIVGGDIQFDWSSGITFPDNLEKYSLIVH 352 Query: 363 CGACMLNRRAMLRRLDEAEAAGVPIVNYGVFIAYVQGVFPRAIEMFPSAMLAWE 416 CGACMLNRR M+ R+ A++ +PIVNYGV IAYVQG+ PRAIEMFP A + +E Sbjct: 353 CGACMLNRREMMYRISYAKSKNIPIVNYGVLIAYVQGLMPRAIEMFPLAKMIYE 406 >B0KBX8.1 B0KBX8_THEP3 Small GTP-binding protein Length = 408 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/414 (59%), Positives = 303/414 (73%), Gaps = 8/414 (1%) Query: 3 VNDTPRGERAHIAVFGRRNAGKSSLINAFCGQEVSIVSPVSGTTTDPVYRPMELLPAGPV 62 +N TP R HIA+FGRRNAGKSSLINA QEV++VS V+GTTTDPV + ME+LP GPV Sbjct: 1 MNTTPISSRLHIAIFGRRNAGKSSLINALTNQEVALVSDVAGTTTDPVSKAMEILPIGPV 60 Query: 63 VLIDTAGLDDTGELGEQRIRQTLQVLKKTDLALLVVDAEAGAGEFERELLQRLAAAGTNV 122 V+IDTAGLDDTGELGE R+++T +VL +TDLA+LV+D G EFE +L+ + V Sbjct: 61 VIIDTAGLDDTGELGELRVKKTYEVLNRTDLAILVIDGTIGLSEFEENVLKIIRDKNIPV 120 Query: 123 MIVLNKIDKITSDPPSLEERCSQLALRLEAGSSIRLFPVSTMSGSGIGALKRAAADRLAQ 182 + V+NK D S ++R + L+LE L VS + GI ALK + Sbjct: 121 VGVINKKD--LSQYSEEDKRKWEEKLKLE------LIEVSALKKHGIEALKMMLIKKAPY 172 Query: 183 EEQRFRLVGDLLSPGDVAVLVVPIDKAAPKGRLILPQQQAIRDIMECDALAVVTKEQELS 242 +++ +VGDL+ PGD VLV+PIDKAAPKGRLILPQQQ IRDI++ DA+A+VTKE EL Sbjct: 173 DDRELSIVGDLIKPGDFVVLVIPIDKAAPKGRLILPQQQTIRDILDNDAMAIVTKEHELK 232 Query: 243 HTLSRLTGKPRIVITDSQVFLKVQADTPPDVPLTSFSILFARYKGDLPRLVSGARSITRL 302 TL L KP +VITDSQ FLKV ADTP D+PLTSFSILFARYKGDL LV G ++I +L Sbjct: 233 ETLQNLGKKPSLVITDSQAFLKVSADTPKDIPLTSFSILFARYKGDLEELVRGVKAIKKL 292 Query: 303 KDGDRVLIAEACTHHRQSDDIGSVKIPRWLREITGRQLLIDHAAGSDFPADLEQYSLIIH 362 K GD+VLIAE CTHHRQSDDIG VKIPRW+R+I G + D ++G FP +LE+YSLI+H Sbjct: 293 KPGDKVLIAEGCTHHRQSDDIGKVKIPRWIRQIVGGDIQFDWSSGITFPDNLEEYSLIVH 352 Query: 363 CGACMLNRRAMLRRLDEAEAAGVPIVNYGVFIAYVQGVFPRAIEMFPSAMLAWE 416 CGACMLNRR M+ R+ A++ +PIVNYGV IAYVQG+ PRAIEMFP A + +E Sbjct: 353 CGACMLNRREMMYRISYAKSKNIPIVNYGVLIAYVQGLMPRAIEMFPLAKMIYE 406 >B9E3M6.1 B9E3M6_CLOK1 Putative uncharacterized protein Length = 413 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/416 (56%), Positives = 306/416 (73%), Gaps = 8/416 (1%) Query: 1 MSVNDTPRGERAHIAVFGRRNAGKSSLINAFCGQEVSIVSPVSGTTTDPVYRPMELLPAG 60 MS+N+ PR R HI +FGRRNAGKSS+INA GQ+++IVS V GTTTDPVY+ +E+LP G Sbjct: 1 MSLNEAPRSVRVHITLFGRRNAGKSSIINAITGQDIAIVSSVKGTTTDPVYKSIEILPIG 60 Query: 61 PVVLIDTAGLDDTGELGEQRIRQTLQVLKKTDLALLVVDAEAGAGEFERELLQRLAAAGT 120 P V+IDTAGLDD+G+LGE R ++TL+VL KTD++L+V+D+ G E++R ++ + + Sbjct: 61 PCVIIDTAGLDDSGQLGELRKKKTLEVLNKTDISLVVIDSTVGITEYDRYIIDEIKSKKI 120 Query: 121 NVMIVLNKIDKITSDPPSLEERCSQLALRLEAGSSIRLFPVSTMSGSGIGALKRAAADRL 180 M +LNK D D ++ +L I L VS ++G GI LK A L Sbjct: 121 PFMGILNKWDISNIDEKDIKNIKEEL--------DIPLIAVSAVTGKGIKELKNQIAGIL 172 Query: 181 AQEEQRFRLVGDLLSPGDVAVLVVPIDKAAPKGRLILPQQQAIRDIMECDALAVVTKEQE 240 +EE +F+++GDL+SPGD VLV PIDKAAPKGRLILPQQQ IRD++E DA+AVVTKE E Sbjct: 173 PKEEDKFKIIGDLISPGDFVVLVTPIDKAAPKGRLILPQQQTIRDVLESDAIAVVTKEYE 232 Query: 241 LSHTLSRLTGKPRIVITDSQVFLKVQADTPPDVPLTSFSILFARYKGDLPRLVSGARSIT 300 L TL L KP+IV+TDSQ FLKV ADTP D+ +TSFSILFAR+KGDL L+ G +++ Sbjct: 233 LRETLESLGKKPKIVVTDSQAFLKVAADTPKDILMTSFSILFARFKGDLIELIKGVKAVG 292 Query: 301 RLKDGDRVLIAEACTHHRQSDDIGSVKIPRWLREITGRQLLIDHAAGSDFPADLEQYSLI 360 +LKDGD+VLIAE CTHHRQSDDIG VKIPRW+R+ITG+++ + ++G F D+++YSLI Sbjct: 293 KLKDGDKVLIAEGCTHHRQSDDIGKVKIPRWIRQITGKKIDFEFSSGVSFTDDIKRYSLI 352 Query: 361 IHCGACMLNRRAMLRRLDEAEAAGVPIVNYGVFIAYVQGVFPRAIEMFPSAMLAWE 416 +HCG CMLN+ AML R++ A VPIVNYG+ IAYVQG+ RA+ FP A + W+ Sbjct: 353 VHCGGCMLNKSAMLHRINTAREFKVPIVNYGILIAYVQGILDRALMPFPRAKMIWD 408 >A5MZP6.1 A5MZP6_CLOK5 HydF Length = 413 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/416 (56%), Positives = 306/416 (73%), Gaps = 8/416 (1%) Query: 1 MSVNDTPRGERAHIAVFGRRNAGKSSLINAFCGQEVSIVSPVSGTTTDPVYRPMELLPAG 60 MS+N+ PR R HI +FGRRNAGKSS+INA GQ+++IVS V GTTTDPVY+ +E+LP G Sbjct: 1 MSLNEAPRSVRVHITLFGRRNAGKSSIINAITGQDIAIVSSVKGTTTDPVYKSIEILPIG 60 Query: 61 PVVLIDTAGLDDTGELGEQRIRQTLQVLKKTDLALLVVDAEAGAGEFERELLQRLAAAGT 120 P V+IDTAGLDD+G+LGE R ++TL+VL KTD++L+V+D+ G E++R ++ + + Sbjct: 61 PCVIIDTAGLDDSGQLGELRKKKTLEVLNKTDISLVVIDSTVGITEYDRYIIDEIKSKKI 120 Query: 121 NVMIVLNKIDKITSDPPSLEERCSQLALRLEAGSSIRLFPVSTMSGSGIGALKRAAADRL 180 M +LNK D D ++ +L I L VS ++G GI LK A L Sbjct: 121 PFMGILNKWDISNIDEKDIKNIKEEL--------DIPLIAVSAVTGKGIKELKNQIAGIL 172 Query: 181 AQEEQRFRLVGDLLSPGDVAVLVVPIDKAAPKGRLILPQQQAIRDIMECDALAVVTKEQE 240 +EE +F+++GDL+SPGD VLV PIDKAAPKGRLILPQQQ IRD++E DA+AVVTKE E Sbjct: 173 PKEEDKFKIIGDLISPGDFVVLVTPIDKAAPKGRLILPQQQTIRDVLESDAIAVVTKEYE 232 Query: 241 LSHTLSRLTGKPRIVITDSQVFLKVQADTPPDVPLTSFSILFARYKGDLPRLVSGARSIT 300 L TL L KP+IV+TDSQ FLKV ADTP D+ +TSFSILFAR+KGDL L+ G +++ Sbjct: 233 LRETLESLGKKPKIVVTDSQAFLKVAADTPKDILMTSFSILFARFKGDLIELIKGVKAVG 292 Query: 301 RLKDGDRVLIAEACTHHRQSDDIGSVKIPRWLREITGRQLLIDHAAGSDFPADLEQYSLI 360 +LKDGD+VLIAE CTHHRQSDDIG VKIPRW+R+ITG+++ + ++G F D+++YSLI Sbjct: 293 KLKDGDKVLIAEGCTHHRQSDDIGKVKIPRWIRQITGKKIDFEFSSGVSFTDDIKRYSLI 352 Query: 361 IHCGACMLNRRAMLRRLDEAEAAGVPIVNYGVFIAYVQGVFPRAIEMFPSAMLAWE 416 +HCG CMLN+ AML R++ A VPIVNYG+ IAYVQG+ RA+ FP A + W+ Sbjct: 353 VHCGGCMLNKSAMLHRINTAREFKVPIVNYGILIAYVQGILDRALMPFPRAKMIWD 408 >Q97IJ0.1 Q97IJ0_CLOAB Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) Length = 411 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/409 (58%), Positives = 300/409 (73%), Gaps = 11/409 (2%) Query: 3 VNDTPRGERAHIAVFGRRNAGKSSLINAFCGQEVSIVSPVSGTTTDPVYRPMELLPAGPV 62 +N TP+GER HIA+FG+ N GKSS+INA QE+++VS V GTTTDPVY+ MELLP GPV Sbjct: 4 LNSTPKGERLHIALFGKTNVGKSSVINALTSQEIALVSNVKGTTTDPVYKAMELLPLGPV 63 Query: 63 VLIDTAGLDDTGELGEQRIRQTLQVLKKTDLALLVVDAEAGAGEFERELLQRLAAAGTNV 122 +LIDTAGLDD +LGE R +TL+VL KTD+A+LV D E+G E+++ + L + Sbjct: 64 MLIDTAGLDDISDLGELRRGKTLEVLSKTDVAILVFDVESGITEYDKNIYSLLLEKKIPL 123 Query: 123 MIVLNKIDKITSDPPSLEERCSQLALRLEAGSSIRLFPVSTMSGSGIGALKRAAADRLAQ 182 + VLNKIDK LE+ SQ I + P+S ++ GI LK + Sbjct: 124 IGVLNKIDKKDY---KLEDYTSQF--------KIPIVPISALNNKGINNLKDELIRLAPE 172 Query: 183 EEQRFRLVGDLLSPGDVAVLVVPIDKAAPKGRLILPQQQAIRDIMECDALAVVTKEQELS 242 + +F++VGDLLSPGD+AVLV PIDKAAPKGRLILPQQQ IRDI+E DA+A+VTKE EL Sbjct: 173 NDDKFKIVGDLLSPGDIAVLVTPIDKAAPKGRLILPQQQTIRDILESDAIAMVTKEFELR 232 Query: 243 HTLSRLTGKPRIVITDSQVFLKVQADTPPDVPLTSFSILFARYKGDLPRLVSGARSITRL 302 TL L KP+IVITDSQVFLKV ADTP D+ +TSFSIL AR+KGDL L GAR+I L Sbjct: 233 ETLDSLRKKPKIVITDSQVFLKVAADTPKDILMTSFSILMARHKGDLIELARGARAIEDL 292 Query: 303 KDGDRVLIAEACTHHRQSDDIGSVKIPRWLREITGRQLLIDHAAGSDFPADLEQYSLIIH 362 KDGD++LIAEACTHHRQSDDIG VKIPRWLR+ TG++L D ++G FP ++E Y+LI+H Sbjct: 293 KDGDKILIAEACTHHRQSDDIGKVKIPRWLRQKTGKKLEFDFSSGFSFPPNIEDYALIVH 352 Query: 363 CGACMLNRRAMLRRLDEAEAAGVPIVNYGVFIAYVQGVFPRAIEMFPSA 411 C CMLNRR+ML R++ + +PIVNYGV IAYVQG+ PRA++ FP A Sbjct: 353 CAGCMLNRRSMLHRIESSVKKQIPIVNYGVLIAYVQGILPRALKPFPYA 401 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,520,735,177 Number of extensions: 105157107 Number of successful extensions: 333157 Number of sequences better than 1.0e-05: 4522 Number of HSP's gapped: 331292 Number of HSP's successfully gapped: 5497 Length of query: 437 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 298 Effective length of database: 1,751,175,118 Effective search space: 521850185164 Effective search space used: 521850185164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)