BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0040.p (172 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LZY2.1 A6LZY2_CLOB8 4Fe-4S ferredoxin, iron-sulfur binding dom... 169 1e-40 Q67J77.1 Q67J77_SYMTH Electron transport protein 136 6e-31 Q180F7.1 Q180F7_CLOD6 Electron transport protein 129 7e-29 B0A730.1 B0A730_9CLOT Putative uncharacterized protein 129 1e-28 Q67J75.1 Q67J75_SYMTH Electron transport protein 120 4e-26 >A6LZY2.1 A6LZY2_CLOB8 4Fe-4S ferredoxin, iron-sulfur binding domain protein Length = 189 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 106/163 (65%) Query: 1 VSAHSTENMFLQQEENPDFYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXX 60 V AHS EN+ +Q ++ +F PRL+V +T V+AP+QCR CE+APCAN CP Sbjct: 23 VVAHSEENILIQSKDKVNFNPRLKVIKTADVSAPIQCRHCENAPCANACPNGSIINKDGV 82 Query: 61 XXXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCD 120 +DTCIGCK+C +VCPFGAI ++ E + G+K +Q GL + +G KERLVA+KCD Sbjct: 83 VLINKDTCIGCKSCAIVCPFGAIDIIVEHKAGEKVIQKGLMCDKDGKLEHKERLVANKCD 142 Query: 121 LCEESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASAQTL 163 LC NGPACV++CPT AL+LV + D + KR +A L Sbjct: 143 LCIGRENGPACVEVCPTEALRLVESKIIDKDISEKRKNAAANL 185 >Q67J77.1 Q67J77_SYMTH Electron transport protein Length = 199 Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 89/163 (54%) Query: 3 AHSTENMFLQQEENPDFYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXXXX 62 AH ++ E F PRLRV T +VT P+QCR CEDAPCAN CP Sbjct: 27 AHLGTSVTTAGEMKIPFQPRLRVVRTSRVTMPIQCRHCEDAPCANACPVGAIVRQDGVVL 86 Query: 63 XXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCDLC 122 Q+ CIGCKTC+L CPFGA+ MVP G + QPGL+ + KER VA KCDLC Sbjct: 87 VKQERCIGCKTCVLACPFGAMDMVPALENGARVEQPGLKMDTPDGKVPKERYVAHKCDLC 146 Query: 123 EESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASAQTLQQ 165 GPACV++C AL LV + ++R A+A + + Sbjct: 147 IGRPGGPACVEVCLARALTLVRRTAIDQRVRSRRVATASGIAR 189 >Q180F7.1 Q180F7_CLOD6 Electron transport protein Length = 171 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 86/156 (55%), Gaps = 12/156 (7%) Query: 1 VSAHSTENMFLQQEENPDFYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXX 60 V AHS E++F Q + +F P+L V +T +V+AP+QCR CEDAPCA CP Sbjct: 23 VVAHSDEDIFYQNLDEINFNPKLSVIKTKEVSAPIQCRHCEDAPCAKACPNGGIVRVGNT 82 Query: 61 XXXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCD 120 ++ CIGCKTCML CP GAI +V L+ G +ER+ A+KCD Sbjct: 83 IKINEENCIGCKTCMLACPIGAIDIVT------------LKDVDEGKLCFRERMTANKCD 130 Query: 121 LCEESGNGPACVQICPTHALQLVVPDDVSMDTAAKR 156 C ES GPACV +CPT A +V +D+ KR Sbjct: 131 FCIESPEGPACVNVCPTKAFTIVKDEDIDSKVKNKR 166 >B0A730.1 B0A730_9CLOT Putative uncharacterized protein Length = 184 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/164 (42%), Positives = 91/164 (55%), Gaps = 12/164 (7%) Query: 1 VSAHSTENMFLQQEENPDFYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXX 60 V H+ E++F Q E +F P+L V + QV+AP+QCRQCEDAPCA CP Sbjct: 23 VVEHNGEDIFYQNPEEINFNPKLEVVKNAQVSAPIQCRQCEDAPCAKACPQDAISRKNNA 82 Query: 61 XXXXQDTCIGCKTCMLVCPFGAIAMVPEFRGGQKQVQPG----LRSNANGVWARKERLVA 116 Q CIGCK CML CP GAI + V+ G L + N E++VA Sbjct: 83 IIVDQKKCIGCKNCMLACPLGAINL--------NDVESGCTVDLTNMPNDKLFCIEKMVA 134 Query: 117 SKCDLCEESGNGPACVQICPTHALQLVVPDDVSMDTAAKRAASA 160 +KCDLC S GPACV++CPT A ++V +D++ KR ASA Sbjct: 135 NKCDLCSGSEKGPACVRVCPTAAFRIVHEEDLTASIKNKRKASA 178 >Q67J75.1 Q67J75_SYMTH Electron transport protein Length = 194 Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/130 (47%), Positives = 76/130 (58%) Query: 19 FYPRLRVTETDQVTAPVQCRQCEDAPCANVCPXXXXXXXXXXXXXXQDTCIGCKTCMLVC 78 PRL + T +VT PVQCR CEDAPCAN CP Q+TCIGCKTC+L C Sbjct: 44 IIPRLYLVHTAEVTMPVQCRHCEDAPCANACPVGAITQKDGIIDVDQETCIGCKTCVLAC 103 Query: 79 PFGAIAMVPEFRGGQKQVQPGLRSNANGVWARKERLVASKCDLCEESGNGPACVQICPTH 138 PFGA+ MVP ++ G++ Q L ++ VASKCD C GPACV CP Sbjct: 104 PFGAMEMVPYYKNGEQVKQLRLTEETGEGPVLQDVFVASKCDRCIGVEGGPACVANCPRE 163 Query: 139 ALQLVVPDDV 148 ALQ+V PD++ Sbjct: 164 ALQVVRPDEL 173 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.133 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 900,667,828 Number of extensions: 30110352 Number of successful extensions: 101104 Number of sequences better than 1.0e-05: 1466 Number of HSP's gapped: 100239 Number of HSP's successfully gapped: 1466 Length of query: 172 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 46 Effective length of database: 1,873,648,313 Effective search space: 86187822398 Effective search space used: 86187822398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)