BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0038.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q180F9.1 Q180F9_CLOD6 Electron transport protein 167 8e-40 A6LZY4.1 A6LZY4_CLOB8 4Fe-4S ferredoxin, iron-sulfur binding dom... 158 3e-37 Q67J75.1 Q67J75_SYMTH Electron transport protein 154 4e-36 B0A732.1 B0A732_9CLOT Putative uncharacterized protein 153 1e-35 A6LZY2.1 A6LZY2_CLOB8 4Fe-4S ferredoxin, iron-sulfur binding dom... 144 5e-33 >Q180F9.1 Q180F9_CLOD6 Electron transport protein Length = 183 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 36/191 (18%) Query: 8 SLVIAYAAKCIGCKACELACFAVHNRDNGVGTAVGTVTMPVLPRLYVIRTDSFTMPVQCR 67 S VIA KC GC+ACE+ACF +HN+ N VG VGTV +PV+PRLY+++ D+F MP+QCR Sbjct: 7 SFVIADPNKCTGCRACEVACFTMHNQHNNVGYTVGTVDIPVIPRLYLVKGDNFCMPIQCR 66 Query: 68 QCENAPCAGACPVQAIRQQDGVIAIDAEACIGCKACALACPFGAISLYKAYSGGAELPXX 127 CE+APC +CP +AI +++ +++++ E CIGCK C LACPFGAI L Y G E+ Sbjct: 67 HCEDAPCLNSCPQKAIVKENNIMSVNEEKCIGCKTCLLACPFGAIDLLPQYEDGKEV--- 123 Query: 128 XXXXERRDSKLQRKTRITAYKCDLCRNTEIPGGTXXXXXXXXXXXXXXXXQDRNPSPACV 187 + + + + AYKCDLC++ E AC+ Sbjct: 124 -------EQVILDENKKIAYKCDLCKDNE--------------------------KIACI 150 Query: 188 AVCPEKALRLV 198 + CP+KAL+LV Sbjct: 151 SACPQKALKLV 161 >A6LZY4.1 A6LZY4_CLOB8 4Fe-4S ferredoxin, iron-sulfur binding domain protein Length = 184 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 104/194 (53%), Gaps = 31/194 (15%) Query: 7 NSLVIAYAAKCIGCKACELACFAVHNRDNGVGTAVGTVTMPVLPRLYVIRTDSFTMPVQC 66 NS ++ A KC+GCKACE+ACF HN VG + P++ R++VI+ FT+PVQC Sbjct: 5 NSFIVGDANKCVGCKACEIACFKAHNE----SVTVGNIQTPIISRIHVIKEKDFTVPVQC 60 Query: 67 RQCENAPCAGACPVQAIRQQDGVIAIDAEACIGCKACALACPFGAISLYKAYSGGAELPX 126 R CENAPCA CP+ AI+ +D I ID E CIGCKACA+ACPFGAI + Y G + Sbjct: 61 RHCENAPCAKVCPINAIKNEDNAIIIDEEICIGCKACAVACPFGAIEMGTKYKDGKAV-M 119 Query: 127 XXXXXERRDSKLQRKTRITAYKCDLCRNTEIPGGTXXXXXXXXXXXXXXXXQDRNPSPAC 186 E + L+ K AYKCDLC+ PAC Sbjct: 120 QNVQKELFEEVLEEKETKVAYKCDLCK--------------------------EQGEPAC 153 Query: 187 VAVCPEKALRLVEA 200 V CP+ AL+L + Sbjct: 154 VKACPKDALKLFDV 167 >Q67J75.1 Q67J75_SYMTH Electron transport protein Length = 194 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 112/194 (57%), Gaps = 28/194 (14%) Query: 5 ASNSLVIAYAAKCIGCKACELACFAVHNRDNGVGTAVGTVTMPVLPRLYVIRTDSFTMPV 64 A N+ V+A KCIGCK CE++CF VH+ D V T VG VT P++PRLY++ T TMPV Sbjct: 3 ALNAFVVADPHKCIGCKVCEVSCFVVHS-DVPVKT-VGQVTTPIIPRLYLVHTAEVTMPV 60 Query: 65 QCRQCENAPCAGACPVQAIRQQDGVIAIDAEACIGCKACALACPFGAISLYKAYSGGAEL 124 QCR CE+APCA ACPV AI Q+DG+I +D E CIGCK C LACPFGA+ + Y G ++ Sbjct: 61 QCRHCEDAPCANACPVGAITQKDGIIDVDQETCIGCKTCVLACPFGAMEMVPYYKNGEQV 120 Query: 125 PXXXXXXERRDSKLQRKTRITAYKCDLCRNTEIPGGTXXXXXXXXXXXXXXXXQDRNPSP 184 E + + + + A KCD C E GG P Sbjct: 121 KQLRLTEETGEGPVLQDVFV-ASKCDRCIGVE--GG-----------------------P 154 Query: 185 ACVAVCPEKALRLV 198 ACVA CP +AL++V Sbjct: 155 ACVANCPREALQVV 168 >B0A732.1 B0A732_9CLOT Putative uncharacterized protein Length = 183 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 107/191 (56%), Gaps = 36/191 (18%) Query: 8 SLVIAYAAKCIGCKACELACFAVHNRDNGVGTAVGTVTMPVLPRLYVIRTDSFTMPVQCR 67 S V+A +KC GC+ACE+ACF HN +N VG VGT+ +PV+PRLY+++ D+ MP+QCR Sbjct: 7 SFVVADPSKCTGCRACEVACFTSHNANNNVGCTVGTINIPVIPRLYLVKDDAVCMPIQCR 66 Query: 68 QCENAPCAGACPVQAIRQQDGVIAIDAEACIGCKACALACPFGAISLYKAYSGGAELPXX 127 CE+APC CPV+AI + D + +D CIGCK C LACPFGAI L Y + Sbjct: 67 HCEDAPCLNTCPVKAISRIDNSVIVDEVKCIGCKTCLLACPFGAIDLLTQYEDSKPV--- 123 Query: 128 XXXXERRDSKLQRKTRITAYKCDLCRNTEIPGGTXXXXXXXXXXXXXXXXQDRNPSPACV 187 E+R + +I AYKCDLC++ + ACV Sbjct: 124 ----EQR--AIDESNKI-AYKCDLCKDKD--------------------------KLACV 150 Query: 188 AVCPEKALRLV 198 CP +AL+LV Sbjct: 151 NACPNQALKLV 161 >A6LZY2.1 A6LZY2_CLOB8 4Fe-4S ferredoxin, iron-sulfur binding domain protein Length = 189 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 106/194 (54%), Gaps = 28/194 (14%) Query: 7 NSLVIAYAAKCIGCKACELACFAVHNRDNGVGTAVGTVTMPVLPRLYVIRTDSFTMPVQC 66 N+ VIA +CIGC+ CE AC H+ +N + + V PRL VI+T + P+QC Sbjct: 2 NNFVIANPKRCIGCRTCEAACVVAHSEENILIQSKDKVNFN--PRLKVIKTADVSAPIQC 59 Query: 67 RQCENAPCAGACPVQAIRQQDGVIAIDAEACIGCKACALACPFGAISLYKAYSGGAELPX 126 R CENAPCA ACP +I +DGV+ I+ + CIGCK+CA+ CPFGAI + + G ++ Sbjct: 60 RHCENAPCANACPNGSIINKDGVVLINKDTCIGCKSCAIVCPFGAIDIIVEHKAGEKVIQ 119 Query: 127 XXXXXERRDSKLQRKTRITAYKCDLCRNTEIPGGTXXXXXXXXXXXXXXXXQDRNPSPAC 186 + +D KL+ K R+ A KCDLC R PAC Sbjct: 120 KGLMCD-KDGKLEHKERLVANKCDLCIG-------------------------RENGPAC 153 Query: 187 VAVCPEKALRLVEA 200 V VCP +ALRLVE+ Sbjct: 154 VEVCPTEALRLVES 167 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,132,660,378 Number of extensions: 39238844 Number of successful extensions: 132321 Number of sequences better than 1.0e-05: 2843 Number of HSP's gapped: 127465 Number of HSP's successfully gapped: 2843 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)