BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0032.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1PC58.1 C1PC58_BACCO Transcriptional regulator, HxlR family          103   4e-21
C2C124.1 C2C124_LISGR Transcriptional regulator                       100   4e-20
A6LTG9.1 A6LTG9_CLOB8 Transcriptional regulator, HxlR family           99   2e-19
C1FUS5.1 C1FUS5_CLOBJ Putative transcriptional regulator               98   2e-19
B1KXH9.1 B1KXH9_CLOBM Putative transcriptional regulator               98   2e-19

>C1PC58.1 C1PC58_BACCO Transcriptional regulator, HxlR family
          Length = 107

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 71/99 (71%)

Query: 6   KSLLAGAEHVHQIIGKKWVSLIIHVLNDGPKRFSELNTMIPDLSKRMLNERLKELEEYGL 65
           +SL    E   Q++GK+WV +II VL++GP RF+E+  +IP +S+++L+ERLKELE+ G+
Sbjct: 4   QSLCPRFEKAFQLLGKRWVGVIIRVLSNGPMRFNEMAELIPHISQKVLSERLKELEDQGI 63

Query: 66  LIRVVIPDRPVRTEYSLTAKGQELGEALGHVEAWALKWL 104
           L+R V P+ PVR EY LT KG+ +   L  V+ WA KW+
Sbjct: 64  LVREVYPESPVRIEYRLTEKGEAIKPVLDEVQNWADKWV 102


>C2C124.1 C2C124_LISGR Transcriptional regulator
          Length = 122

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 64/97 (65%)

Query: 8   LLAGAEHVHQIIGKKWVSLIIHVLNDGPKRFSELNTMIPDLSKRMLNERLKELEEYGLLI 67
           L    E   QI+GK+W  LII VL  GP RF ++ + I  +S R+L ERLKELEE GL+ 
Sbjct: 19  LCPKFESAFQILGKRWTGLIISVLMSGPMRFKQVASEIEPMSDRVLAERLKELEELGLVT 78

Query: 68  RVVIPDRPVRTEYSLTAKGQELGEALGHVEAWALKWL 104
           R V P+ PVR EY LTAKG++L + +  V+ WA KW+
Sbjct: 79  RQVYPETPVRIEYELTAKGKDLQKVMQEVQCWADKWI 115


>A6LTG9.1 A6LTG9_CLOB8 Transcriptional regulator, HxlR family
          Length = 102

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 63/91 (69%)

Query: 13  EHVHQIIGKKWVSLIIHVLNDGPKRFSELNTMIPDLSKRMLNERLKELEEYGLLIRVVIP 72
           E+  +++GK+W  LII  L +G  RFS++   IP++S RML ER KELE+ G++IR V P
Sbjct: 11  ENAFELLGKRWTGLIIRTLLNGQNRFSDIEEAIPNMSARMLTERFKELEKEGIIIRKVYP 70

Query: 73  DRPVRTEYSLTAKGQELGEALGHVEAWALKW 103
           + PVR EY LT KG++L  A+  ++ WA KW
Sbjct: 71  ETPVRIEYELTEKGRDLQSAMDEIQKWAEKW 101


>C1FUS5.1 C1FUS5_CLOBJ Putative transcriptional regulator
          Length = 102

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 62/91 (68%)

Query: 13  EHVHQIIGKKWVSLIIHVLNDGPKRFSELNTMIPDLSKRMLNERLKELEEYGLLIRVVIP 72
           E+  +++GK+W  LII  L +G KRFS++   IP++S RML ER KELEE G++IR V P
Sbjct: 11  ENAFELLGKRWTGLIIRTLLNGQKRFSDIAEAIPNMSARMLTERFKELEEEGIIIRKVYP 70

Query: 73  DRPVRTEYSLTAKGQELGEALGHVEAWALKW 103
           + PVR EY LT KG +L   +  ++ WA KW
Sbjct: 71  ETPVRIEYELTEKGLDLQAVMDEIQKWAEKW 101


>B1KXH9.1 B1KXH9_CLOBM Putative transcriptional regulator
          Length = 102

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 62/91 (68%)

Query: 13  EHVHQIIGKKWVSLIIHVLNDGPKRFSELNTMIPDLSKRMLNERLKELEEYGLLIRVVIP 72
           E+  +++GK+W  LII  L +G KRFS++   IP++S RML ER KELEE G++IR V P
Sbjct: 11  ENAFELLGKRWTGLIIRTLLNGQKRFSDIAEAIPNMSARMLTERFKELEEEGIIIRKVYP 70

Query: 73  DRPVRTEYSLTAKGQELGEALGHVEAWALKW 103
           + PVR EY LT KG +L   +  ++ WA KW
Sbjct: 71  ETPVRIEYELTEKGLDLQAVMDEIQKWAEKW 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 631,038,634
Number of extensions: 22274214
Number of successful extensions: 64267
Number of sequences better than 1.0e-05: 2271
Number of HSP's gapped: 64177
Number of HSP's successfully gapped: 2272
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)