BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0029.p (480 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DB80.1 B1DB80_9BACL Glycoside hydrolase family 28 505 e-141 A7M662.1 A7M662_BACOV Putative uncharacterized protein 379 e-103 C3QBB8.1 C3QBB8_9BACE Glycoside hydrolase family 28 378 e-103 C3QPY9.1 C3QPY9_9BACE Putative uncharacterized protein 377 e-102 A7LQG8.1 A7LQG8_BACOV Putative uncharacterized protein 375 e-102 >B1DB80.1 B1DB80_9BACL Glycoside hydrolase family 28 Length = 478 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/479 (53%), Positives = 323/479 (67%), Gaps = 7/479 (1%) Query: 1 MNQLQVYEAPNHIPGREDYQVKVRTAGGGWQPLFVYEVKVDMHEVRPASMALFDMEGEAE 60 +N + VY P +P +D+ V VR GG W + VKVDMH VR AS+ FD GE E Sbjct: 6 VNAISVYPIPRALPVNQDFDVFVRIPGGEWTEVGALLVKVDMHHVREASLVKFDYSGEVE 65 Query: 61 VEIICLYTEIENVNISPASRSVECSH-DRHKISFRLNGPQKLSVEINGGRFRNLHLFANP 119 V++IC +++V I P S + D I FRL+ PQKLSVEING RF NLHLFA Sbjct: 66 VKVICNREPVKDVVIRPLSTGIHAEVIDERTIQFRLSRPQKLSVEINGDRFHNLHLFAKE 125 Query: 120 MEVGAPQPDGAGVHLVQPGIHRSPDLLALMKRTEDQGTGLPQTLYFAPGTHYIEETVFAV 179 +E P GV + PGIHR + L ++ D TLYF G H+IE+ + V Sbjct: 126 LEKLRPDSSDPGVACIHPGIHR---IDVLQEKLADNRY---HTLYFTAGLHHIEQVIVNV 179 Query: 180 PSGTVIYLAGGAAFVGSLSCDRVEDVEIRGRGVVYLAEFHRFSAFRGVRIVFSRRIRVEG 239 PSG IY+ GGA GS CD+VE+V+I G G++YLAEF RFS+FRGVRI++SR I V G Sbjct: 180 PSGKRIYIEGGAYVAGSFVCDKVENVQISGHGILYLAEFGRFSSFRGVRIMYSRNISVSG 239 Query: 240 ITVIDPPHYSIFIGQSTDIAVTNFKSFSTRGWSDGIDIMSSSEVAIRDVFMRNSDDCIAI 299 ITV+DPPHYSI++GQS I +++F+SFSTRGWSDGID+MS +V I VFMRNSDDCIAI Sbjct: 240 ITVVDPPHYSIYLGQSQQIRISDFESFSTRGWSDGIDMMSCCDVEINHVFMRNSDDCIAI 299 Query: 300 YGSRWDYFGDSRNISVRDSVLWADVAHPLMIGTHGDYRRGGDIIENIVYENIDILEHHEP 359 YG RW Y+GD+RNI+V++S LWADVAHP IGTHGDY G +IENI++ENIDILEHHEP Sbjct: 300 YGHRWGYYGDTRNINVKNSTLWADVAHPTNIGTHGDYEADGTLIENIIFENIDILEHHEP 359 Query: 360 QENYWGALAINAGDGNTVRNVLYSNIRVERIEQGQLFDLRVVMNKDYNPEPGKGIEKVTF 419 Q+NY G L+INAGD NTVRNV Y NIR+E + G++ D+RVV N DYNP PG IE++TF Sbjct: 360 QDNYQGCLSINAGDKNTVRNVTYRNIRIEPFKLGRIIDIRVVWNPDYNPVPGNRIEQITF 419 Query: 420 RNVSFNGGGVHPSRIYGYDEDRGVNGVEFINLQIGGEWVENTRTDLILLNAYAHNVVFK 478 + +NG SRI G+D+ R V+GV NL I V + + + L + +N+ F Sbjct: 420 DGIYYNGSDDAISRISGFDDSRCVDGVTIHNLYINDRKVADVSSGNLELGEHVNNLTFS 478 >A7M662.1 A7M662_BACOV Putative uncharacterized protein Length = 470 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/467 (42%), Positives = 281/467 (60%), Gaps = 37/467 (7%) Query: 13 IPGREDYQVKVRTAGGGWQPLFVYEVKVDMHEVRPASMALFDMEGEAEVEIICLYTEIEN 72 +P +DY VKVR AGG W+ +F YEV+VDM V+ ASM FD+ EV + I++ Sbjct: 40 MPHNDDYTVKVREAGGEWKDVFEYEVQVDMDRVQSASMVQFDIGSPVEVMVKKNNGTIQD 99 Query: 73 VNISPASRSVECSHDRHKISFRLNGPQKLSVEINGGRFRNLHLFANPMEVGAPQPDGAGV 132 V I P + ++ + + + I F L PQ LS+E NG R NLHLFANP+E V Sbjct: 100 VKIRPLAIGIQHTVNHNAIFFTLTRPQCLSIEFNGDRLHNLHLFANPLETETYTESSDKV 159 Query: 133 HLVQPGIHRSPDLLALMKRTEDQGTGLPQTLYFAPGTHYIEETVFAVPSGTVIYLAGGAA 192 PG+HR DL P T +PS T +YLA GA Sbjct: 160 MYFGPGVHRPKDL---------------------PNTQ------IQIPSNTTVYLAPGAV 192 Query: 193 FVGSLSCDRVEDVEIRGRGVVYLAEFHRFSAFRGVRIVFSRRIRVEGITVIDPPHYSIFI 252 L D+ E+V I GRG++ RG+ + S+ I ++GITVI+P HY++F Sbjct: 193 VKAKLLIDKAENVRIVGRGILD-------HPIRGIEVTHSKNIWIDGITVINPDHYTVFG 245 Query: 253 GQSTDIAVTNFKSFSTRGWSDGIDIMSSSEVAIRDVFMRNSDDCIAIYGSRWDYFGDSRN 312 G+ST + ++N KSFS +GWSDGID+M S+V I +VFMRNSDDCIAIY RW+Y+G SRN Sbjct: 246 GESTGLTISNLKSFSCKGWSDGIDLMCCSDVLIDNVFMRNSDDCIAIYAHRWNYYGGSRN 305 Query: 313 ISVRDSVLWADVAHPLMIGTHGD-YRRGGDIIENIVYENIDILEHHEPQENYWGALAINA 371 +++++S+LWAD+AHP+ IG HG+ + G+I+ENI N+DILEH E Y G +A++ Sbjct: 306 VTLQNSILWADIAHPINIGGHGNPDDKVGEILENITVRNVDILEHDEDDLLYQGCMAVDC 365 Query: 372 GDGNTVRNVLYSNIRVERIEQGQLFDLRVVMNKDYNPEPGKGIEKVTFRNVSFNGGGVHP 431 GD N VR VL+ +IRVE I++G+LF + V N Y+ +PG+GIE + FRN+ +NG G +P Sbjct: 366 GDKNLVRKVLFEDIRVENIQEGRLFHINVRFNSKYDKQPGRGIEDIIFRNIIYNGVGENP 425 Query: 432 SRIYGYDEDRGVNGVEFINLQIGGEWVENTRTDLILLNAYAHNVVFK 478 S + G+D++R V + F N+ I G ++N D + N Y N+ K Sbjct: 426 SLLKGFDKERSVKNIIFDNVIINGMKMKN--IDDFITNEYIKNITVK 470 >C3QBB8.1 C3QBB8_9BACE Glycoside hydrolase family 28 Length = 470 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 279/467 (59%), Gaps = 37/467 (7%) Query: 13 IPGREDYQVKVRTAGGGWQPLFVYEVKVDMHEVRPASMALFDMEGEAEVEIICLYTEIEN 72 +P +DY VKVR AGG W+ +F YEV+VDM V+ ASM FD+ EV + I++ Sbjct: 40 MPHNDDYTVKVREAGGEWKDVFEYEVQVDMDRVQSASMVQFDIGSPVEVMVKKNNGTIQD 99 Query: 73 VNISPASRSVECSHDRHKISFRLNGPQKLSVEINGGRFRNLHLFANPMEVGAPQPDGAGV 132 V I P + ++ + + + I F L PQ LS+E NG R NLHLFANP+E V Sbjct: 100 VKIRPLAIGIQHTVNHNAIFFTLTRPQCLSIEFNGDRLHNLHLFANPLETETYTESSDKV 159 Query: 133 HLVQPGIHRSPDLLALMKRTEDQGTGLPQTLYFAPGTHYIEETVFAVPSGTVIYLAGGAA 192 PG+HR DL P T +PS T +YLA GA Sbjct: 160 MYFGPGVHRPKDL---------------------PNTQ------IQIPSNTTVYLAPGAV 192 Query: 193 FVGSLSCDRVEDVEIRGRGVVYLAEFHRFSAFRGVRIVFSRRIRVEGITVIDPPHYSIFI 252 L D+ E+V I GRG++ RG+ + S+ I ++GITVI+P HY++F Sbjct: 193 VKAKLLIDKAENVRIVGRGILD-------HPIRGIEVTHSKNIWIDGITVINPDHYTVFG 245 Query: 253 GQSTDIAVTNFKSFSTRGWSDGIDIMSSSEVAIRDVFMRNSDDCIAIYGSRWDYFGDSRN 312 G+ST + + N KSFS +GWSDGID+M S+V I +VFMRNSDDCIAIY RW+Y+G SRN Sbjct: 246 GESTGLTINNLKSFSCKGWSDGIDLMCCSDVLIDNVFMRNSDDCIAIYAHRWNYYGGSRN 305 Query: 313 ISVRDSVLWADVAHPLMIGTHGD-YRRGGDIIENIVYENIDILEHHEPQENYWGALAINA 371 +++++S+LWAD+AHP+ IG HG+ + G+I+ENI N+DILEH E Y G +A++ Sbjct: 306 VTLQNSILWADIAHPINIGGHGNPDDKAGEILENITVRNVDILEHDEDDLLYQGCMAVDC 365 Query: 372 GDGNTVRNVLYSNIRVERIEQGQLFDLRVVMNKDYNPEPGKGIEKVTFRNVSFNGGGVHP 431 GD N VR L+ +IRVE I++G+LF + V N Y+ +PG+GIE + FRN+ +NG G +P Sbjct: 366 GDKNLVRKALFEDIRVENIQEGRLFHINVRFNSKYDKQPGRGIEDIIFRNIIYNGVGENP 425 Query: 432 SRIYGYDEDRGVNGVEFINLQIGGEWVENTRTDLILLNAYAHNVVFK 478 S + G+D++R V + F N+ I G ++N D + N Y N+ K Sbjct: 426 SLLKGFDKERSVKNIIFDNVIINGMKMKN--IDDFITNEYIKNITVK 470 >C3QPY9.1 C3QPY9_9BACE Putative uncharacterized protein Length = 470 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/467 (42%), Positives = 279/467 (59%), Gaps = 37/467 (7%) Query: 13 IPGREDYQVKVRTAGGGWQPLFVYEVKVDMHEVRPASMALFDMEGEAEVEIICLYTEIEN 72 +P +DY VKVR AGG W+ +F YEV+VDM V+ ASM FD+ EV + I++ Sbjct: 40 MPHNDDYTVKVREAGGEWKDVFEYEVQVDMDRVQSASMVQFDIGSPVEVMVKKNNGTIQD 99 Query: 73 VNISPASRSVECSHDRHKISFRLNGPQKLSVEINGGRFRNLHLFANPMEVGAPQPDGAGV 132 V I P + ++ + + + I F L PQ LS+E NG R NLHLFANP+E V Sbjct: 100 VKIRPLAIGIQHTVNHNAIFFTLTRPQCLSIEFNGDRLHNLHLFANPLETETYTESSDKV 159 Query: 133 HLVQPGIHRSPDLLALMKRTEDQGTGLPQTLYFAPGTHYIEETVFAVPSGTVIYLAGGAA 192 PG+HR DL P T +PS T +YLA GA Sbjct: 160 MYFGPGVHRPKDL---------------------PNTQ------IQIPSNTTVYLAPGAV 192 Query: 193 FVGSLSCDRVEDVEIRGRGVVYLAEFHRFSAFRGVRIVFSRRIRVEGITVIDPPHYSIFI 252 L D+ E+V I GRG++ RG+ + S+ I ++GITVI+P HY++F Sbjct: 193 VKAKLLIDKAENVRIVGRGILD-------HPIRGIEVTHSKNIWIDGITVINPDHYTVFG 245 Query: 253 GQSTDIAVTNFKSFSTRGWSDGIDIMSSSEVAIRDVFMRNSDDCIAIYGSRWDYFGDSRN 312 G+ST + + N KSFS +GWSDGID+M S+V I +VFMRNSDDCIAIY RW+Y+G SRN Sbjct: 246 GESTGLTINNLKSFSCKGWSDGIDLMCYSDVLIDNVFMRNSDDCIAIYAHRWNYYGGSRN 305 Query: 313 ISVRDSVLWADVAHPLMIGTHGD-YRRGGDIIENIVYENIDILEHHEPQENYWGALAINA 371 +++++S+LWAD+AHP+ IG HG+ + G+I+ENI N+DILEH E Y G +A++ Sbjct: 306 VTLQNSILWADIAHPINIGGHGNPDDKAGEILENITVRNVDILEHDEDDLLYQGCMAVDC 365 Query: 372 GDGNTVRNVLYSNIRVERIEQGQLFDLRVVMNKDYNPEPGKGIEKVTFRNVSFNGGGVHP 431 GD N VR L+ +IRVE I++G+LF + V N Y+ +PG+GIE + FRN+ +NG G +P Sbjct: 366 GDKNLVRKALFEDIRVENIQEGRLFHINVRFNSKYDKQPGRGIEDIIFRNIIYNGVGENP 425 Query: 432 SRIYGYDEDRGVNGVEFINLQIGGEWVENTRTDLILLNAYAHNVVFK 478 S + G+D++R V + F N+ I G ++N D + N Y N+ K Sbjct: 426 SLLKGFDKERSVKNIIFDNVIINGMKMKN--IDDFITNEYIKNITVK 470 >A7LQG8.1 A7LQG8_BACOV Putative uncharacterized protein Length = 468 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/443 (42%), Positives = 269/443 (60%), Gaps = 35/443 (7%) Query: 17 EDYQVKVRTAG-GGWQPLFVYEVKVDMHEVRPASMALFDMEGEAEVEIICLYTEIENVNI 75 +DY VKVR G W L+ Y VKVDM A+M FD G+ EV + E+ + + Sbjct: 40 DDYTVKVRQVGEKDWVDLYEYNVKVDMDTKSDATMVQFDFSGKVEVLVQKNNGELRSAVV 99 Query: 76 SPASRSVECSHDRHKISFRLNGPQKLSVEINGGRFRNLHLFANPMEVGAPQPDGAGVHLV 135 P S+ ++ D + + F L+ PQKLSVE NG R NLH+FANP+ P + V Sbjct: 100 RPLSKGIQPEIDGNFLLFTLDKPQKLSVEFNGDRLNNLHVFANPIIENVPDKNDPNVMYF 159 Query: 136 QPGIHRSPDLLALMKRTEDQGTGLPQTLYFAPGTHYIEETVFAVPSGTVIYLAGGAAFVG 195 + GIH D+ F +PS T +YL GGA G Sbjct: 160 ESGIHEPTDVAG---------------------------KCFRIPSNTTVYLEGGAVLKG 192 Query: 196 SLSCDRVEDVEIRGRGVVYLAEFHRFSAFRGVRIVFSRRIRVEGITVIDPPHYSIFIGQS 255 L+CD VE+V+I G G++ + +G+ + +S+ + ++GITV++ HY++ GQS Sbjct: 193 CLTCDSVENVKILGHGMLLEPQ-------QGISVAYSKNVLIDGITVVNSRHYTVSGGQS 245 Query: 256 TDIAVTNFKSFSTRGWSDGIDIMSSSEVAIRDVFMRNSDDCIAIYGSRWDYFGDSRNISV 315 I + N KSFS +GWSDG+D MS S+V I DVF+RNSDDCIAIY RW+Y+GDSRNI V Sbjct: 246 QGITIKNLKSFSYQGWSDGLDFMSCSDVVIDDVFLRNSDDCIAIYTHRWNYYGDSRNIRV 305 Query: 316 RDSVLWADVAHPLMIGTHGDYRRGGDIIENIVYENIDILEHHEPQENYWGALAINAGDGN 375 +S LWAD+AHP+ IGTHG+ + G +++E+I+++NIDILEH E +Y G + IN GD N Sbjct: 306 LNSTLWADIAHPINIGTHGNTKTGDEVLEDILFKNIDILEHDEDDRDYQGCMTINVGDHN 365 Query: 376 TVRNVLYSNIRVERIEQGQLFDLRVVMNKDYNPEPGKGIEKVTFRNVSFNGGGVHPSRIY 435 +N+ + +IRVE I++GQLF LRV+ N+ YN PG+G+ +TFRN+S G ++PS + Sbjct: 366 LAQNITFEDIRVEHIQEGQLFHLRVMYNQKYNTGPGRGVRNITFRNISCTGKYINPSLME 425 Query: 436 GYDEDRGVNGVEFINLQIGGEWV 458 GYD++R V + F N+ + G+ + Sbjct: 426 GYDKNRKVENILFENIMLNGKRI 448 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,081,674,483 Number of extensions: 139548844 Number of successful extensions: 260065 Number of sequences better than 1.0e-05: 75 Number of HSP's gapped: 260191 Number of HSP's successfully gapped: 78 Length of query: 480 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 340 Effective length of database: 1,741,754,103 Effective search space: 592196395020 Effective search space used: 592196395020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)