BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0025.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q24NX0.1 Q24NX0_DESHY Putative uncharacterized protein                109   1e-22
B8FX15.1 B8FX15_DESHD Transcriptional regulator, PadR-like family     109   1e-22
B8G072.1 B8G072_DESHD Transcriptional regulator, PadR-like family     108   2e-22
C1I6K6.1 C1I6K6_9CLOT Transcriptional regulator                       105   1e-21
Q24W55.1 Q24W55_DESHY Putative uncharacterized protein                 97   5e-19

>Q24NX0.1 Q24NX0_DESHY Putative uncharacterized protein
          Length = 305

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 2  TGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSGL 61
          TGY+LKK+ +ESSF+YWSGNNNQIYKAL+++     VTNEV HQ+SSPSKK+YTIT  GL
Sbjct: 17 TGYELKKIFEESSFMYWSGNNNQIYKALIKMQEEELVTNEVIHQESSPSKKVYTITEEGL 76

Query: 62 AELRKWVVAPPEPP 75
           +L+ WV+  PE P
Sbjct: 77 KKLKTWVLHSPEVP 90


>B8FX15.1 B8FX15_DESHD Transcriptional regulator, PadR-like family
          Length = 305

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 2  TGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSGL 61
          TGY+LKK+ +ESSF+YWSGNNNQIYKAL+++     VTNEV HQ+SSPSKK+YTIT  GL
Sbjct: 17 TGYELKKIFEESSFMYWSGNNNQIYKALIKMQEEELVTNEVIHQESSPSKKVYTITEEGL 76

Query: 62 AELRKWVVAPPEPP 75
           +L+ WV+  PE P
Sbjct: 77 KKLKTWVLHSPEVP 90


>B8G072.1 B8G072_DESHD Transcriptional regulator, PadR-like family
          Length = 325

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 59/75 (78%)

Query: 1  MTGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSG 60
          +TGY++KK+IQ + F+YWSGNNNQIYKA VELL+ GFVT EV+HQD SPSK IYTIT  G
Sbjct: 16 LTGYEMKKIIQNTPFMYWSGNNNQIYKAFVELLDEGFVTKEVQHQDGSPSKNIYTITGDG 75

Query: 61 LAELRKWVVAPPEPP 75
            E + W+++  + P
Sbjct: 76 QQEFKSWLLSVTDVP 90


>C1I6K6.1 C1I6K6_9CLOT Transcriptional regulator
          Length = 184

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 57/69 (82%)

Query: 1  MTGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSG 60
          +TGYD+KK+IQES F YWSGNNNQIYK+LV+LL    V NEV+HQ+S+PSKKIY+IT  G
Sbjct: 16 LTGYDIKKIIQESPFFYWSGNNNQIYKSLVQLLEKNLVVNEVKHQESAPSKKIYSITELG 75

Query: 61 LAELRKWVV 69
          L EL  W++
Sbjct: 76 LKELENWII 84


>Q24W55.1 Q24W55_DESHY Putative uncharacterized protein
          Length = 133

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 55/75 (73%)

Query: 1  MTGYDLKKLIQESSFLYWSGNNNQIYKALVELLNAGFVTNEVRHQDSSPSKKIYTITSSG 60
          + G   +K+IQ + F+YWSGNNNQIYKA VELL+ GFVT EV+HQD SPSK IYTIT  G
Sbjct: 25 INGIRNEKIIQNTPFMYWSGNNNQIYKAFVELLDEGFVTKEVQHQDGSPSKNIYTITGDG 84

Query: 61 LAELRKWVVAPPEPP 75
            E + W+++  + P
Sbjct: 85 QQEFKSWLLSVTDVP 99


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 500,297,705
Number of extensions: 15828726
Number of successful extensions: 49557
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 49653
Number of HSP's successfully gapped: 111
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 126 (53.1 bits)