BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0021.p (336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5C3K9.1 C5C3K9_9MICO Binding-protein-dependent transport system... 241 7e-62 C4EM08.1 C4EM08_STRRS Carbohydrate ABC transporter membrane prot... 227 1e-57 A7VVY7.1 A7VVY7_9CLOT Putative uncharacterized protein 222 3e-56 B1D910.1 B1D910_9BACL Binding-protein-dependent transport system... 221 6e-56 B1DCJ5.1 B1DCJ5_9BACL Binding-protein-dependent transport system... 215 5e-54 >C5C3K9.1 C5C3K9_9MICO Binding-protein-dependent transport systems inner membrane component Length = 309 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 194/309 (62%), Gaps = 1/309 (0%) Query: 27 MATAAERTDKPLTAAIPQKKRKWQSYALLFILPSFLIYTLFVIVPTVGSIYLSFTSWDGI 86 M A E P AA+P+++R + I+P+ + Y + V+ PTV +FT W G Sbjct: 1 MTLAVEPRVAPPGAAVPRRRRHRSAVPYALIVPALVFYAVVVLYPTVAGGVYAFTDWTGR 60 Query: 87 SEDVRYIGFANFAEIWQSPRVHNALKNTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLF 146 +++G NF E++ +P +AL+NTLV+ VS +++ + + LA+ + V RN+ Sbjct: 61 RVAPQFVGLDNFVELFSAPAARSALRNTLVIAVSTTIVQTLLGLALALALHSVLASRNVL 120 Query: 147 RSVFYFPTLLSGIVMGFVWAMILNYNFGVFNQILDAIGLGSWVVDWLGNPKYAMISIILS 206 R++F+ P LL +++GF+W IL G N L+AIGLG +WLG+ A+ S+I Sbjct: 121 RTLFFAPALLPPVIIGFLWQYILT-PAGPLNDALEAIGLGGLTQNWLGDASVALASVIGV 179 Query: 207 TVWKGAGYYMIIYLAGLQGIPAELNEAASIDGASGFQQFRHITFPLLAGSMTVCLVLSMI 266 +W+ AG M+IYLAGLQG+PAEL EAA+IDGAS +Q+ R +T PLL + T+ + L++I Sbjct: 180 IIWQNAGLTMVIYLAGLQGVPAELLEAAAIDGASRWQRLRRVTIPLLIPATTIAMSLTLI 239 Query: 267 SALKIFDQIAVMTDGGPGFETETLTYIIYKVGFGELRQGFGTALAMVLFLIIMLITVIQV 326 +LK+FDQ+ VMT GGPG+ TETL+ ++YK F R G+ A+A+VL +I+ +Q+ Sbjct: 240 GSLKLFDQVYVMTGGGPGYATETLSVVMYKEAFVSGRYGYSAAIALVLTMIVFAFAFVQL 299 Query: 327 KFLRKREVQ 335 + LR+ EV Sbjct: 300 RGLRRFEVD 308 >C4EM08.1 C4EM08_STRRS Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 306 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 191/305 (62%), Gaps = 14/305 (4%) Query: 30 AAERTDKPLTAAIPQKKRKWQSYALLFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISED 89 A R +PL P W LF +P+ L+Y V+ P++ ++ +FT W G+ ED Sbjct: 14 ARTRRARPLAGLSP----SW-----LFAVPALLVYAAVVLYPSIVGVFYAFTDWSGVGED 64 Query: 90 VRYIGFANFAEIWQSPRVHNALKNTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSV 149 + ++G +NF I +V +L NTL++TV++++++N +LLA+ V R L R V Sbjct: 65 MSFVGLSNFRAILGDEQVMGSLGNTLLLTVAILVVQNGVGLLLALGVHARLKSRALLRVV 124 Query: 150 FYFPTLLSGIVMGFVWAMILNYNFGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVW 209 F+ P ++S +++ F+W + + + GL VDWLG+P A+ SI VW Sbjct: 125 FFAPVVVSPVMVAFLWKYVYTPD-----PSMGLNGLLGLEVDWLGDPSVALWSIAGMVVW 179 Query: 210 KGAGYYMIIYLAGLQGIPAELNEAASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISAL 269 + AGY M+I+LAGL+G+P EL+EAA IDGA Q+FR++T+PLLA ++T+ L+LS I L Sbjct: 180 QYAGYSMVIFLAGLEGVPKELHEAAMIDGAGTLQRFRYVTWPLLAPALTINLMLSTIGGL 239 Query: 270 KIFDQIAVMTDGGPGFETETLTYIIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVKFL 329 K+FDQ+ T+GGPG+ TETL+ ++YK F + G+ TA+A+VL L + +++IQ+ +L Sbjct: 240 KLFDQVFAATNGGPGYATETLSTVLYKQAFVFGKFGYSTAIALVLALFVAAVSLIQISYL 299 Query: 330 RKREV 334 R REV Sbjct: 300 RSREV 304 >A7VVY7.1 A7VVY7_9CLOT Putative uncharacterized protein Length = 286 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 108/283 (38%), Positives = 188/283 (66%), Gaps = 1/283 (0%) Query: 53 ALLFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQSPRVHNALK 112 ++LF +P+FLIYT+ +IVP +G+ LSFT W+GIS G N+ ++ R+ NA+ Sbjct: 5 SILFTIPAFLIYTVLMIVPIIGAFLLSFTDWNGISASYNITGAKNYLDMLSDERLRNAIF 64 Query: 113 NTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSVFYFPTLLSGIVMGFVWAMILNYN 172 TL +TV + + N+ +L+A+++++ R N+FRS+F+ P +LS + + F+W IL+Y Sbjct: 65 VTLKITVVVAVTVNVLGLLIAMMLNRARRMTNVFRSIFFLPYVLSTVAISFIWLAILSYT 124 Query: 173 FGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLAGLQGIPAELNE 232 GV N +LD +GL + D++GN A+ SI + +W+ G++M++YLA +Q +P L E Sbjct: 125 -GVLNSLLDMVGLENLAADYIGNANNAIWSICVIEIWRMLGFHMVLYLASIQTVPQSLYE 183 Query: 233 AASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGPGFETETLTY 292 A +DG S + QFR++T P++ +T+ +++S+++ +K +D + V+T+GGPG+ TET+TY Sbjct: 184 ACIMDGGSRWHQFRYVTLPMIVPGITISVIMSIMTEMKQYDIVKVITNGGPGYATETVTY 243 Query: 293 IIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVKFLRKREVQ 335 I FG G+ +A+A+ LF++I I+V+Q++ +K EV Sbjct: 244 NIVTQAFGNNMLGYSSAIAVFLFIVIAAISVLQIQLSKKLEVS 286 >B1D910.1 B1D910_9BACL Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 195/293 (66%), Gaps = 5/293 (1%) Query: 44 QKKRKWQSYALLFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQ 103 +K + + + +LF++P L++T VI+P V I SFT+WDGIS + YIG+ N+ Q Sbjct: 5 KKTIRREMWYILFLVPGVLLFTFAVILPFVTGIRYSFTNWDGISRKLTYIGWDNYVNALQ 64 Query: 104 SPRVHNALKNTLVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSVFYFPTLLSGIVMGF 163 + L NT + L LL N+ A+L A+L+D RNLFR++F+ P+++S I+ GF Sbjct: 65 DADLWTVLGNTFKYAIILTLLVNLVALLFALLLDSYLPLRNLFRTIFFLPSVISVILAGF 124 Query: 164 VWAMILNYNFGVFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLAGL 223 +W+ NY+ G F ++L +G+ V LGNP A+ +I+ VW+G G MIIY+AGL Sbjct: 125 IWSY--NYSQG-FPRLLAHLGMD--VTSPLGNPDRALYGLIIIAVWQGIGAPMIIYIAGL 179 Query: 224 QGIPAELNEAASIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGP 283 QGIPAEL+E+A IDGA + FR++T PLLA S+T+ ++L + +LK+FD + V T+GGP Sbjct: 180 QGIPAELSESARIDGAGPLRVFRNVTLPLLAPSVTINMLLVLTGSLKVFDLVLVTTNGGP 239 Query: 284 GFETETLTYIIYKVGFGELRQGFGTALAMVLFLIIMLITVIQVKFLRKREVQM 336 GF TE ++ IYK F + G+G AL+M+ F+I++++TV+QV RKREV+M Sbjct: 240 GFATEVISTFIYKNAFSSFKAGYGMALSMIFFVILVIVTVVQVTIFRKREVEM 292 >B1DCJ5.1 B1DCJ5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 114/277 (41%), Positives = 180/277 (64%), Gaps = 1/277 (0%) Query: 55 LFILPSFLIYTLFVIVPTVGSIYLSFTSWDGISEDVRYIGFANFAEIWQSPRVHNALKNT 114 LFILP+F ++ +F+++P V +SFT + G + YIGF N+ ++++ +LKN Sbjct: 17 LFILPAFALFAVFILIPLVYGFVMSFTDYGGFNVKANYIGFDNYVKLFKDDYFIVSLKNN 76 Query: 115 LVMTVSLVLLENIAAILLAVLVDKVRWFRNLFRSVFYFPTLLSGIVMGFVWAMILNYNFG 174 L+ TV V L + A+L A+ ++ V R R FYFP + S + + VWA++ N G Sbjct: 77 LLYTVLFVPLTMLLALLAAIALNSVLHLRKYLRMAFYFPQITSMVSIAIVWALLFNPMSG 136 Query: 175 VFNQILDAIGLGSWVVDWLGNPKYAMISIILSTVWKGAGYYMIIYLAGLQGIPAELNEAA 234 N +L+AIG+ + WL + K+A+I+I++ VWK GYYMII LAG+QGIP L E+A Sbjct: 137 PINHMLEAIGIAN-PPQWLMSSKWALIAIVVVAVWKSFGYYMIILLAGIQGIPTHLYESA 195 Query: 235 SIDGASGFQQFRHITFPLLAGSMTVCLVLSMISALKIFDQIAVMTDGGPGFETETLTYII 294 +DGA+ F+QF +IT P L+ ++ + L+L++I++ ++FD ++VMTDGGPG T L + I Sbjct: 196 RLDGANRFKQFLYITLPSLSPTLFMVLILTIINSFQVFDLVSVMTDGGPGRSTNVLVFRI 255 Query: 295 YKVGFGELRQGFGTALAMVLFLIIMLITVIQVKFLRK 331 Y+ F R G+ A++ VLFLIIM+I++IQ + +K Sbjct: 256 YQEAFVNYRMGYSAAMSTVLFLIIMVISLIQFRLEKK 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,875,534,720 Number of extensions: 76713445 Number of successful extensions: 291956 Number of sequences better than 1.0e-05: 6529 Number of HSP's gapped: 282983 Number of HSP's successfully gapped: 6557 Length of query: 336 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 200 Effective length of database: 1,779,438,163 Effective search space: 355887632600 Effective search space used: 355887632600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)