BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0017.p (549 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7R9.1 B1D7R9_9BACL Histidine kinase internal region 462 e-128 B1DBG2.1 B1DBG2_9BACL Histidine kinase internal region 178 1e-42 A7VVZ0.1 A7VVZ0_9CLOT Putative uncharacterized protein 174 3e-41 B3K3I7.1 B3K3I7_9BACI Histidine kinase internal region 173 5e-41 C0C1J1.1 C0C1J1_9CLOT Putative uncharacterized protein 166 7e-39 >B1D7R9.1 B1D7R9_9BACL Histidine kinase internal region Length = 592 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/536 (45%), Positives = 356/536 (66%), Gaps = 12/536 (2%) Query: 6 WGRRSKSIFVKFSASFLLVGLIPLLALSFFSVKTFSGYVERYTTSNLQQMVLYMSYNLNS 65 W +S+F KF+ +FL+VG+IPLL LS S+ F+G ++R+T ++ +Q+V+++S N++ Sbjct: 4 WRNAWQSLFFKFALAFLVVGMIPLLVLSTLSLNQFTGQLQRHTENSFKQLVIHLSKNVDD 63 Query: 66 AFNQYNEISKLMYTGRYEGFIDSYKQDQT--ANVNELEQINTIPIDSFLKTVLFSDPYIS 123 A YNEISK MY EG + +QD T ++ ++N + ID FL +VL+SD +I Sbjct: 64 ALLNYNEISKTMYYSS-EGV--ASRQDATLREEIDTEGKMNLMSIDDFLLSVLYSDSHIQ 120 Query: 124 SAVFVRQSDGKLYSQEK-ENRSLDTNS-FPAAEWLETMAPKPSAVAIFPTHTDQYFFRSN 181 +A FVR SDG +Y Q + ++ LD N FPA W ++ P + + PTH + Y+ S Sbjct: 121 NAFFVRASDGMVYHQSRVSSKVLDPNEPFPAVSWKFALSSTPKKLVVIPTHLETYY-GST 179 Query: 182 RKVFTIGRSLIDTSGKVTQAPKVVGTLFLDIDISLFEQFFRELSLGAKDELYLLDGEGHV 241 +V T+ R+L DTSGK+ ++GTL+ DID+ +F++ FR+ L D++ ++DG G++ Sbjct: 180 DQVVTLARNLFDTSGKLGAEATLLGTLYFDIDLEIFDRLFRQAELSNNDQMVIVDGNGYI 239 Query: 242 YFSNQN--LPEGAVAAAVQTNREMIGLSEDIPFLNGRVIARIHRGSLFEQLLSVRAAVYI 299 +SNQ L + + + N EM+ SE IPF+ G+VI I + L+ L +R+ V I Sbjct: 240 LYSNQKDKLGKRLDENSARRNGEMLMFSEPIPFIGGQVIGLISKRDLYASLTPIRSTVII 299 Query: 300 AIMICAFVMVVMGAWFSRRLAAPIREIIRQMTVVESGRLDTRLSVNTNDEMGRLAHGFNR 359 IC +VV+G FSRR + PI +++R M VESG L+ + DE+GRL HGFNR Sbjct: 300 VAAICMAALVVLGVLFSRRFSLPILDMMRLMIKVESGNLEPGPELKRKDELGRLWHGFNR 359 Query: 360 MVERLQIHIDEAYVAQIKQKQTELNALKSQIRPHYLYNTLEVIRMNAVDKEAGEVADMIL 419 M+ RLQ I+++YV +IK+KQ ELNALKSQIRPHYLYNTLEVIRM+AV EVADMI Sbjct: 360 MIARLQWFINDSYVNEIKRKQAELNALKSQIRPHYLYNTLEVIRMSAVSNGDDEVADMIH 419 Query: 420 ALSNELKYVIDYGEDRASIRSELEHLQNYFYIISVRFENRYELVLDIAPEVQLDWPILKL 479 +LSN+L+Y IDYGE+ ++ E++H+++YF++I VR++ R EL +DI ++ + ILKL Sbjct: 420 SLSNQLQYTIDYGEEWVTLEQEIKHVKHYFHLIEVRYDRRIELQIDIQDDLLREAQILKL 479 Query: 480 SLQPIVENAVQHGLRQQG-KGTVGITVEK-KDRVLAVTIYDDGVGMSREALARITR 533 SLQP+VENA+ HGLR G KG V IT E+ + LAVT+YD+G+GM E +AR+ R Sbjct: 480 SLQPVVENAILHGLRPLGNKGIVQITAERAQGGNLAVTVYDNGIGMDEETVARLNR 535 >B1DBG2.1 B1DBG2_9BACL Histidine kinase internal region Length = 595 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 138/528 (26%), Positives = 256/528 (48%), Gaps = 30/528 (5%) Query: 22 LLVGLIPLLALSFFSVKTFSGYVERYTTSNLQQMVLYMSYNLNSAFNQYNEISKLMYTGR 81 +L+ ++PL + +S F+ +E QM+ ++ N+++ N+ N +S + Y + Sbjct: 25 VLLIVVPLGVIGAWSFSIFASKMEEQVGKYQLQMLKQVTLNIDTYMNELNRLSLMPY--Q 82 Query: 82 YEGFID----SYKQDQTANVNELEQINTIPIDSFLKTVLFSDPYISSAVFVRQSDGKLYS 137 Y+ +D S K + ++ E++ +N +F+ V + + + G Y Sbjct: 83 YQEILDFLATSRKPGEALSLQEIDDLN-----NFVSKVFLNGRVDIMGISLFGEHGASYV 137 Query: 138 QEKENRSLDTNSFPA-AEWLETMAPKPSAVAIFPTHTDQYFFRSNRKVFTIGRSLIDTSG 196 E++ + T EWLE + TH + + +VF+I R L Sbjct: 138 VLPESQYMTTYQLGGNTEWLEKAKGRFGQPTFITTHEVKSTSGTAYQVFSIAREL----- 192 Query: 197 KVTQAPKVVGTLFLDIDISLFEQFFRELSLGAKDELYLLDGEGHVYFSNQNLP-----EG 251 + + +G + +DID + + ++SLG+K+ LY+ D G + + EG Sbjct: 193 RSFDSGDTLGYIVIDIDPAEVRKLLSQVSLGSKESLYMTDSAGDLVLRKEKTAIYPVIEG 252 Query: 252 AVAAAVQTNREMIGLSEDIPFLNGRVIARIHRGS-----LFEQLLSVRAAVYIAIMICAF 306 V ++ ++ G S + ++ V G L + L VR ++ + IC Sbjct: 253 LSDEGV-SHHKIDGKSLLVAHVSSEVTGWTTVGVVPVSVLMKDSLVVRNSIILIGGICVG 311 Query: 307 VMVVMGAWFSRRLAAPIREIIRQMTVVESGRLDTRLSVNTNDEMGRLAHGFNRMVERLQI 366 + V++ + + R+ +P+R + M VE G L V DE+G+L + FN MV L Sbjct: 312 LAVLLSVFIAFRITSPLRMLRSLMRKVERGDLKVSFPVRQWDEVGQLGNAFNMMVSHLSE 371 Query: 367 HIDEAYVAQIKQKQTELNALKSQIRPHYLYNTLEVIRMNAVDKEAGEVADMILALSNELK 426 Y +I++K E+ AL+S+I PH+LYNTL I M A + EV M LS L+ Sbjct: 372 LGYRLYETEIREKDAEIAALQSKINPHFLYNTLGSISMYAEVEGNREVVTMTNNLSRLLR 431 Query: 427 YVIDYGEDRASIRSELEHLQNYFYIISVRFENRYELVLDIAPEVQLDWPILKLSLQPIVE 486 Y + ++ ++R EL+H++ Y I +R+++R + L++ E P++ L +QPIVE Sbjct: 432 YSLSGRKETVTLRDELDHVKGYMTIQKMRYDDRIDFRLEV-DESLYGCPVIPLMIQPIVE 490 Query: 487 NAVQHGLRQQ-GKGTVGITVEKKDRVLAVTIYDDGVGMSREALARITR 533 NA+ HGL + G+G + ++ ++ +L + I DDG+GM+ E L+ + + Sbjct: 491 NAINHGLDKGIGEGRIQLSCYQEQGMLMIVIEDDGIGMTSEQLSAMRK 538 >A7VVZ0.1 A7VVZ0_9CLOT Putative uncharacterized protein Length = 599 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 140/546 (25%), Positives = 260/546 (47%), Gaps = 30/546 (5%) Query: 5 IWGRRSK------SIFVKFSASFLLVGLIPLLALSFFSVKTFSGYVERYTTSNLQQMVLY 58 +W R+ K IF+K F + +I +L S + ++ FS V +++ ++ Sbjct: 1 MWIRKMKEKLRHPGIFLKILILFECILIIAVLVTSSYIMQRFSKTV-------MEKEIML 53 Query: 59 MSYNLNS----AFNQYNEISKLMYTGRYEGFIDSYKQDQTANVNELEQINTIPI-DSFLK 113 L+S ++YN I L Y + I N +E QIN I I +F K Sbjct: 54 GDTKLDSLTDYCNDKYNRIYSL-YNYIHNDSISEIVAAVNQNPDEAYQINKIEIVKAFSK 112 Query: 114 TVLFSDPYISSAVFVRQSDGKLYSQEKENRSLDTNSFPAAEW--LETMAPKPSAVAIFPT 171 V +DP IS V + +G +YS + SF + +E + + Sbjct: 113 GVFSADPDISD-VIISSLNGTVYSYSGDKYINVKPSFDFVHYKAVEEFLNSDETICMIYD 171 Query: 172 HTDQYFFRSNRKVFTIGRSLIDTSGKVTQAPKVVGTLFLDIDISLFEQFFRELSLGAKDE 231 Y R V + + D+S + ++VG +++ + + E+ + + E Sbjct: 172 DPSSYTLREREPVLSFVGKIFDSS--IFPQREMVGVFIMNVPLEMIEKQNPLSNTSMEGE 229 Query: 232 LYLLDGEGHVYFSNQNLPEGAVAAAV-QTNREMIGLSEDIPFLNGRVIARIHRGSLFEQL 290 L L++ + + +S G A + Q+ + +D+ + + + + ++L Sbjct: 230 LTLINSKKQILYSTNQENWGKTAEPMPQSEADQYIKIKDVGTSGAKTVYVLSNKDMTKEL 289 Query: 291 LSVRAAVYIAIMICAFVMVVMGAWFSRRL-AAPIREIIRQMTVVESGRLDTRLSVNTNDE 349 + +Y+ +M+ A ++ +M F R+ ++ ++ M V++G ++ + + DE Sbjct: 290 QEINNQIYV-VMVAAIILTIMVCLFIYRIFNRQVQTLLHSMQQVQAGDFSLQIPIKSKDE 348 Query: 350 MGRLAHGFNRMVERLQIHIDEAYVAQIKQKQTELNALKSQIRPHYLYNTLEVIRMNAVDK 409 +G ++ FN M ERL +I E Y A+I++K ELNAL++QI PH+LYNTL+ IR A+ Sbjct: 349 IGVISQAFNEMCERLNSYISEVYAAEIQRKNAELNALQTQIDPHFLYNTLDSIRAKALAA 408 Query: 410 EAGEVADMILALSNELKYVIDYGEDRASIRSELEHLQNYFYIISVRFENRYELVLDIAPE 469 + + +MI+ L L++ + ++ ELE++ Y + R+E R E+ + I P+ Sbjct: 409 QDEDTGEMIVLLGKLLRWSSGTTDKFITLEDELEYIDTYLRLQKYRYEERLEVNIQI-PD 467 Query: 470 VQLDWPILKLSLQPIVENAVQHGL-RQQGKGTVGITV-EKKDRVLAVTIYDDGVGMSREA 527 LD I KL LQP+VEN ++H ++ KG +GI EK+ + L +TI+D+G G+ ++ Sbjct: 468 EYLDDFIPKLILQPLVENVIKHAFADKEDKGFIGIVASEKEGKRLEITIFDNGKGIEKDT 527 Query: 528 LARITR 533 L I Sbjct: 528 LQEICE 533 >B3K3I7.1 B3K3I7_9BACI Histidine kinase internal region Length = 610 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 138/520 (26%), Positives = 251/520 (48%), Gaps = 48/520 (9%) Query: 40 FSGYVERYTTSNLQQMVLYMSYNLNSAFNQYNEISKL-MYTGRYEGFIDSYKQDQTANVN 98 FS VER T+ Q+V ++ NL+ + ++ + +Y + Y+++ + Sbjct: 40 FSNSVERRTSDYTAQLVDQINRNLDRTLMEMQRLTLMPLYDSGVLSILRKYREE-----D 94 Query: 99 ELEQINTIPIDS----FLKTVLFSDPYISSAVFVRQSDGKLYSQEKENRSLDTNSFPAAE 154 L Q T+ S ++ ++ F P I S + + G +S + Sbjct: 95 SLHQQPTVEERSKMQLYIASMTFDRPEIDS-IQIFAGSGYTFSSLAPSAIAAYTDVERQP 153 Query: 155 WLETMAPKPSAVAIFPTHTDQYFFRSNRKVFTIGRSLIDTSGKVTQAPKVVGTLFLDIDI 214 W + A + P H Y+ N+ F++ R + + + +G + +D+ Sbjct: 154 WYPGVVEARGAWVLLPPHRPSYYLDGNQSYFSVARLI-----REPNTNRTLGLVKIDLKQ 208 Query: 215 SLFEQFFRELSLGAKDELYLLDGEGHVYFSNQNLPEGAVAAAVQTNREMIGLS------E 268 +LF+Q + L + + + ++++ +G A+ + ++GLS Sbjct: 209 TLFKQLVDNVRLEENGGIVVQNSREELFYTAT--ADGDTEASKLLSDRILGLSGRSETAS 266 Query: 269 DIPFLNG---------------RVIARIHRGSLFEQLLSVRAAVYIAIMICAFVMVVMGA 313 +I + G +++ I SL + +R +A +IC + + Sbjct: 267 EILHMEGSKYLVVSNYSRYSDINIVSYIPVASLLVETKELRNFTLLAGLICLVLAGALAI 326 Query: 314 WFSRRLAAPIREIIRQMTVVESGRLDTRLSVNTNDEMGRLAHGFNRMVERLQIHIDEAYV 373 +FS RL P+ ++R+M +VE G + V T DE+GRL GFNRMVE + + E YV Sbjct: 327 YFSYRLTQPLGTLVRKMRLVELGDFKQSVPV-TEDEIGRLGSGFNRMVEEIDRLVHEVYV 385 Query: 374 AQIKQKQTELNALKSQIRPHYLYNTLEVIRMNAVDKEAGEVADMILALSNELKYVIDYGE 433 +++++ EL AL+SQI+PH++YNTLE I M A + +V++M AL ++ ++ + Sbjct: 386 LGMREREAELAALQSQIQPHFIYNTLESISMLARQRNNEDVSEMATALGRLIRSAVE--Q 443 Query: 434 DRASIR--SELEHLQNYFYIISVRFENRYELVLDIAPEVQLDWPILKLSLQPIVENAVQH 491 DR+ IR ELE ++Y I +R +R + + DI + D + KL LQP++ENA+ H Sbjct: 444 DRSLIRLGEELETAESYIRIQKMRHGSRLQAMFDIEEGLD-DCLVPKLLLQPLIENAIMH 502 Query: 492 GL--RQQGKGTVGITVEKKDRVLAVTIYDDGVGMSREALA 529 G+ R+QG GTV +TV + + + +T+ DDG G+S + LA Sbjct: 503 GIGDREQG-GTVYVTVARFEDEVLLTVRDDGRGLSEDELA 541 >C0C1J1.1 C0C1J1_9CLOT Putative uncharacterized protein Length = 601 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 117/430 (27%), Positives = 208/430 (48%), Gaps = 31/430 (7%) Query: 126 VFVRQSDGKLYSQEKENRSLDTN-SFPAAEWLETMAPKPSAVAIFPTHTDQYFFRSN--R 182 VFV +G +Y +K SL + F W M + V+I + + + + Sbjct: 120 VFVCSYNGSVYGSDKNKLSLTADYDFTRTGWFADMKQSGAGVSILSQYDSSSYISTGEPQ 179 Query: 183 KVFTIGRSLIDTSGKVTQAPKVVGTLFLDIDISLFEQFFRELSLGAKDELYLLDGEGHV- 241 K+F+I + + + ++ K +G L + ++ + + ++ + ++D + Sbjct: 180 KLFSIVKKIYNY-----RSGKEIGCLIVHMNSDILGNVLQSVNSNEYQQCLIIDNNKKII 234 Query: 242 ------YFSNQNLPEGAVAAAVQTNREMIGLSE------DIPFLNG-RVIARIHRGSLFE 288 Y Q N M LSE + G VI+ + + + Sbjct: 235 YHPDSDYIGTQYREARVSELLTMENGYMESLSEKGYLVFSTSAVTGWSVISVVDNKYIMD 294 Query: 289 QLLSVRAAVYIAIMICAFVMVVMGAWFSRRLAAPIREIIRQMTVVESGRLDTRLSVNTND 348 + +R + + + C + V ++ S+ ++ P+ + R+M V G D R + +D Sbjct: 295 SINRLRLFLILTAVFCVVLSVYFASYISKTISDPVARLQRKMYQVGEGDFDIRAATGASD 354 Query: 349 EMGRLAHGFNRMVERLQIHIDEAYVAQIKQKQTELNALKSQIRPHYLYNTLEVIRMNAVD 408 E+G+L F++MVER + I+ Y ++I QK+ ELNAL++QI PH+LYNTL+ I M A + Sbjct: 355 EIGQLTLSFDKMVERTKQLIENVYQSEIYQKEAELNALQAQINPHFLYNTLQTIDMMAEE 414 Query: 409 KEAGEVADMILALSNELKYVIDYGEDRASIRSELEHLQNYFYIISVRFENRYELVLDIAP 468 + A E++D ALS +Y I+ G++ ++ E+ H++NY I +RF + E+ DI Sbjct: 415 EGADEISDACQALSKIFRYSINRGQEFVHVQDEIVHIENYMLIQKLRFGGKLEVRYDIQN 474 Query: 469 EVQLDWPILKLSLQPIVENAVQHGLRQ-QGKGTVGITVEKKDRVLAVTIYDDGVGMS--- 524 E + + I+KL +QP+VENAV HG+ K V I V +K+ L + D+G G++ Sbjct: 475 ECR-ELYIVKLLIQPMVENAVVHGMENVLDKCYVTIRVYRKEDCLYAEVEDNGTGIAPGQ 533 Query: 525 ----REALAR 530 E LAR Sbjct: 534 LMELNEKLAR 543 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,943,719,135 Number of extensions: 119033131 Number of successful extensions: 355491 Number of sequences better than 1.0e-05: 2093 Number of HSP's gapped: 353339 Number of HSP's successfully gapped: 2095 Length of query: 549 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 408 Effective length of database: 1,732,333,088 Effective search space: 706791899904 Effective search space used: 706791899904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)