BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0013.p (268 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WL13.1 Q5WL13_BACSK Sugar ABC transporter permease 269 2e-70 A4IKD4.1 A4IKD4_GEOTN Putative integral membranebinding-protein-... 261 4e-68 C0CYK7.1 C0CYK7_9CLOT Putative uncharacterized protein 240 1e-61 C2KZR7.1 C2KZR7_9FIRM Sugar ABC superfamily ATP binding cassette... 240 1e-61 B1D7J3.1 B1D7J3_9BACL Binding-protein-dependent transport system... 210 1e-52 >Q5WL13.1 Q5WL13_BACSK Sugar ABC transporter permease Length = 280 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/261 (49%), Positives = 181/261 (69%) Query: 8 VSLFMAVLFAGPLVWMLFVSVKEEGMKIITVTDWFTPPYSFAVYQEILSGTKLTNWIGNS 67 V+ A+LF P++WM FVS+K EG + DWF PPY+ Y +I+ G+ + WI NS Sbjct: 20 VAFISALLFLFPIIWMFFVSLKPEGTAASSPLDWFAPPYTIGNYVDIILGSDVFLWIWNS 79 Query: 68 XXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQVAKDMN 127 SK+ FRYR ++ LAGL++PGEA IIPLY++ M Sbjct: 80 FIVGFLTTILTLLLTSMAAFAFSKMRFRYRKALYLFFLAGLMVPGEAMIIPLYEIIGSMG 139 Query: 128 LLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIMLPLCRPAL 187 LL++Y GLI+P +A+P+ VI+LKSFFD +PN+L+ES ++DG +R++ ++LPL + A+ Sbjct: 140 LLDTYAGLILPGIAAPLGVIILKSFFDGVPNELIESAKLDGCNDFRLYWNVVLPLGKSAV 199 Query: 188 ASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNAIASIPII 247 A++ ILTFIGSWNNFLWPFL+I ++L+TLP+GIP S YSE Y+ PM VNAIASIP+I Sbjct: 200 AAVGILTFIGSWNNFLWPFLAIISESLYTLPVGIPMFNSNYSETYILPMTVNAIASIPVI 259 Query: 248 VLFVIFERQIVKGISMSGIKG 268 + F++FE+QIVKG+S SGIKG Sbjct: 260 IAFLVFEKQIVKGVSFSGIKG 280 >A4IKD4.1 A4IKD4_GEOTN Putative integral membranebinding-protein-dependent transport protein Length = 296 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 126/266 (47%), Positives = 179/266 (67%) Query: 3 WVYRLVSLFMAVLFAGPLVWMLFVSVKEEGMKIITVTDWFTPPYSFAVYQEILSGTKLTN 62 W+ ++ L AVLF P++WM+FVS+K +G +WF PPY+ Y +L + + Sbjct: 31 WIKVIIGLIAAVLFILPVIWMIFVSLKPDGYVTKNPVEWFLPPYTLDNYTRLLEESLILK 90 Query: 63 WIGNSXXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQV 122 W NS S++ FRY+ + L GL+IPGEATIIPLY+V Sbjct: 91 WTWNSFIVAFITTLLSLLVTSLAAFAISRLKFRYKNFILVFFLLGLMIPGEATIIPLYEV 150 Query: 123 AKDMNLLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIMLPL 182 AK + L+++Y GLI+P +AS + +IVLKSFFD++P +L+ES IDG ++++F +I+LPL Sbjct: 151 AKSLGLIDTYAGLILPMIASSMGIIVLKSFFDNVPKELIESAVIDGCSTFKLFYKIILPL 210 Query: 183 CRPALASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNAIA 242 +PA++++ I TFIGSWNNFLWP+L+ ++L+TLP+GIP S YS YV PM NAIA Sbjct: 211 SKPAISAIGIFTFIGSWNNFLWPYLATLSEDLYTLPVGIPVFNSNYSTAYVLPMTANAIA 270 Query: 243 SIPIIVLFVIFERQIVKGISMSGIKG 268 SIP+I+ F+IFE+QIVKGIS +GIKG Sbjct: 271 SIPVIIAFLIFEKQIVKGISFTGIKG 296 >C0CYK7.1 C0CYK7_9CLOT Putative uncharacterized protein Length = 275 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 117/262 (44%), Positives = 168/262 (64%) Query: 7 LVSLFMAVLFAGPLVWMLFVSVKEEGMKIITVTDWFTPPYSFAVYQEILSGTKLTNWIGN 66 +VS +AVLF P++W L VS K+EG + WF PPY+ Y +L +K+ W+ N Sbjct: 14 IVSTLVAVLFLFPVIWALAVSFKKEGTAVSNAIQWFLPPYTAQNYPRVLFDSKVPLWLFN 73 Query: 67 SXXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQVAKDM 126 S SKI FR L++ L GL++PGEATIIPLY + + Sbjct: 74 SVVIALVSTLLVVMLSAMAAYALSKIRFRGSGLVYLFFLIGLMVPGEATIIPLYIICNRL 133 Query: 127 NLLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIMLPLCRPA 186 +LL+SY G++ P +A + +I+L +FF IP++L+E+ IDG G +IF R++LPL +P Sbjct: 134 HLLDSYVGIMAPTIAVSMNMIILTNFFKGIPDELIEAAIIDGAGHGKIFARLILPLSKPV 193 Query: 187 LASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNAIASIPI 246 L ++AI F+ SWNN+LWPFL D+N+FTLP+GIPT I QYS DYV P+ + +ASIP Sbjct: 194 LVTVAIFAFMASWNNYLWPFLCAMDENIFTLPVGIPTFIGQYSIDYVVPLTASMVASIPA 253 Query: 247 IVLFVIFERQIVKGISMSGIKG 268 IV +++ ER IV+GI+M+G+KG Sbjct: 254 IVAYLLLERYIVEGIAMTGVKG 275 >C2KZR7.1 C2KZR7_9FIRM Sugar ABC superfamily ATP binding cassette transporter, membrane protein Length = 276 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/261 (42%), Positives = 170/261 (65%) Query: 8 VSLFMAVLFAGPLVWMLFVSVKEEGMKIITVTDWFTPPYSFAVYQEILSGTKLTNWIGNS 67 +SL +A++ P++W LF S++ EG + V WFTPPY+ Y ++L T + W NS Sbjct: 16 LSLLIALIMLSPIIWGLFCSIQYEGKQFHNVFSWFTPPYTLQNYPQVLLKTGVFRWFCNS 75 Query: 68 XXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLYQVAKDMN 127 + I F+ +F L G+L+P EATIIPL+ + + Sbjct: 76 LIVAVVTTALSVLVSTLAAYSIAHISFKGSGFFYFYFLIGILVPSEATIIPLFVLMSKLK 135 Query: 128 LLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIMLPLCRPAL 187 L++SY GLI+P++AS + ++ SFF S+P +L E+V+IDGGG W I+T+++LPL RP + Sbjct: 136 LIDSYSGLILPSVASSMNFVITYSFFRSLPRELFEAVRIDGGGEWIIYTKVVLPLSRPII 195 Query: 188 ASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNAIASIPII 247 A++AI++FI SWNN++WP L + + L+TLP+GIPTLI D+V PM +N +AS+P+I Sbjct: 196 ATIAIMSFIASWNNYIWPLLCVFSEKLYTLPIGIPTLIKIERPDFVIPMCINMVASLPMI 255 Query: 248 VLFVIFERQIVKGISMSGIKG 268 +L++IFE+QIV+GIS GIKG Sbjct: 256 ILYLIFEKQIVQGISTGGIKG 276 >B1D7J3.1 B1D7J3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 270 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/268 (37%), Positives = 164/268 (61%), Gaps = 1/268 (0%) Query: 2 KWVYRLVSLFMAVLFAGPLVWMLFVSVKEEGMKIITVTDWFT-PPYSFAVYQEILSGTKL 60 KW +++ +AVLF PL+WML VS+K +G + ++DW +F+ Y+++++G+++ Sbjct: 3 KWALNIIATVLAVLFVFPLIWMLLVSLKPDGTNVYAMSDWVHFADLTFSNYKKVITGSEI 62 Query: 61 TNWIGNSXXXXXXXXXXXXXXXXXXXXXXSKIPFRYRTLMFFVVLAGLLIPGEATIIPLY 120 W NS SK+PF+ + +F ++ +GLLIP EA +IPLY Sbjct: 63 LRWTWNSTVIGVITTLLSILLSSLAAYSFSKMPFKSKGFLFVLITSGLLIPTEAILIPLY 122 Query: 121 QVAKDMNLLNSYQGLIIPALASPVAVIVLKSFFDSIPNDLLESVQIDGGGSWRIFTRIML 180 + +NL+++ +I+P L +P+ +++LK F D +P D +E+ QIDG G++RI+ I L Sbjct: 123 ETTLHLNLIDNKWAIILPGLTNPIGILLLKQFMDGVPKDYIEAAQIDGSGTFRIWWNICL 182 Query: 181 PLCRPALASMAILTFIGSWNNFLWPFLSITDDNLFTLPMGIPTLISQYSEDYVKPMVVNA 240 PL + A+ S+ I I SWNNFLWP+L+IT + L G+PT +S + M + Sbjct: 183 PLTKSAMVSVGIFFLILSWNNFLWPYLTITSEENMILSAGLPTFLSNNNMSLNMIMTASG 242 Query: 241 IASIPIIVLFVIFERQIVKGISMSGIKG 268 IA+IP I++F I +R IV+G++MSG+KG Sbjct: 243 IAAIPTILVFAILQRHIVQGVAMSGVKG 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.143 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,436,943,483 Number of extensions: 53181955 Number of successful extensions: 200674 Number of sequences better than 1.0e-05: 5838 Number of HSP's gapped: 194159 Number of HSP's successfully gapped: 5838 Length of query: 268 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 135 Effective length of database: 1,807,701,208 Effective search space: 244039663080 Effective search space used: 244039663080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)