BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0012.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WL14.1 Q5WL14_BACSK Sugar ABC transporter permease 311 5e-83 C2KZR8.1 C2KZR8_9FIRM ABC superfamily ATP binding cassette trans... 283 2e-74 C0CYK6.1 C0CYK6_9CLOT Putative uncharacterized protein 274 6e-72 A4IKD3.1 A4IKD3_GEOTN ABC-type sugar transport systems, permease... 274 8e-72 C5EHJ8.1 C5EHJ8_9FIRM Sugar ABC transporter permease 222 4e-56 >Q5WL14.1 Q5WL14_BACSK Sugar ABC transporter permease Length = 293 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 150/293 (51%), Positives = 208/293 (70%), Gaps = 3/293 (1%) Query: 1 MKIKKWRADAQALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVL 60 MK WR D + + FL+ F + Y LFT++P+FKG++M+ + WTLI + DF+G +Y+ VL Sbjct: 1 MKKLTWRDDLRPVPFLIAFFVAYVLFTVYPIFKGMQMSLFNWTLIEQQDFVGLAHYANVL 60 Query: 61 QDREVWEALGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVAS 120 +D WEA G++ +FVVL+TPTM++L++ LAL+AN + L+ F+R FF+PS+LSV+V S Sbjct: 61 KDPNFWEAFGNTTLFVVLSTPTMVILALVLALMANLNTKLKTFFRGSFFLPSILSVSVIS 120 Query: 121 YLGLFVFQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHL 180 ++ +F+ QPYTG+VN++L L E FWL LAW++I +TLWWTVGFN IL+L Sbjct: 121 FVAIFMLQPYTGVVNNILQAFGL---DKEPFWLATPSLAWVSIIAVTLWWTVGFNMILYL 177 Query: 181 SAIQEIPDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTG 240 +A+Q IPDE+YEAA +DGA +QMFWRITLP L PI++ I +LQI+ASFKVF QI ++T Sbjct: 178 TALQGIPDELYEAAEVDGATRQQMFWRITLPQLLPISRLIFLLQILASFKVFAQILLITD 237 Query: 241 GGPLDSTRPIIQLIYQTGFKSNDLGYAATMSYXXXXXXXXXXXXQYWMNNRKG 293 GGP STRPII IY+ GF+ DLGYAA MSY Q + ++G Sbjct: 238 GGPGTSTRPIILYIYEMGFERYDLGYAAAMSYLLFMVLLVLSVIQLRLGGKEG 290 >C2KZR8.1 C2KZR8_9FIRM ABC superfamily ATP binding cassette transporter, membrane protein Length = 303 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 127/271 (46%), Positives = 194/271 (71%) Query: 2 KIKKWRADAQALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVLQ 61 K K + A A+LF++PF ++Y +FTI+P+F+G+ ++ W L+ K F+G +NY K++Q Sbjct: 11 KHKIGKKQAVAILFIMPFFVLYSIFTIFPVFQGIYVSLCNWNLMGKTSFVGIENYKKMMQ 70 Query: 62 DREVWEALGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASY 121 D+ + + H++ FV+ + P +++LS LAL+ANR ++F R+ +++P VLSV+VASY Sbjct: 71 DKNFYLSCIHTVKFVIFSVPFLVILSFILALLANRAVCFRRFLRTAYYLPGVLSVSVASY 130 Query: 122 LGLFVFQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLS 181 L FVF PY GL+N +L H L G EI WL ++ W ++ +TLWWT+GF+ +L+L+ Sbjct: 131 LASFVFAPYRGLLNGLLRACHFLNGQKEILWLQDSNKVWFSLVAMTLWWTIGFSMLLYLA 190 Query: 182 AIQEIPDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGG 241 A+Q+IP+ +Y+AA++DGA Q+FW+IT+P L P + MLQIIASFKVF QI+++TGG Sbjct: 191 ALQDIPEVLYDAAKVDGAAPLQIFWKITVPLLKPTIFLVMMLQIIASFKVFGQIHLMTGG 250 Query: 242 GPLDSTRPIIQLIYQTGFKSNDLGYAATMSY 272 GP ++TR +IQ IYQ F+ N LGYA+ MSY Sbjct: 251 GPANTTRSLIQYIYQQAFEKNKLGYASAMSY 281 >C0CYK6.1 C0CYK6_9CLOT Putative uncharacterized protein Length = 293 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 137/261 (52%), Positives = 191/261 (73%) Query: 12 ALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVLQDREVWEALGH 71 A+LFLLPF + Y +FTIWP+ +G+ ++ +KW L+ K F+G NY K L DR WEALG+ Sbjct: 11 AVLFLLPFTVFYTIFTIWPIIQGLYVSLHKWGLMGKQRFVGLKNYQKFLGDRYFWEALGN 70 Query: 72 SLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFVFQPYT 131 + FVVLT P ++VL++ LAL+ANR S +KF+R +++P+VLSV V SY LF+F+PY Sbjct: 71 TTKFVVLTVPVLMVLALLLALLANRNSRGRKFFRVAYYLPNVLSVTVVSYCALFMFKPYL 130 Query: 132 GLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEIPDEIY 191 G VNS L I +L EIFWL+E + W + T+WWTVG++ +L+LSA+++IP ++Y Sbjct: 131 GFVNSFLKTIGVLQPAEEIFWLSEGQRPWFVVVAATVWWTVGYSMMLYLSALKDIPGQLY 190 Query: 192 EAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDSTRPII 251 EAA +DGA D + F+ IT+P L T I MLQ+IASFKVF Q +++T GGP STRP+I Sbjct: 191 EAAAMDGATDVKAFFYITIPMLKRTTYLIFMLQVIASFKVFGQFWLITKGGPGTSTRPLI 250 Query: 252 QLIYQTGFKSNDLGYAATMSY 272 QLIYQTGF+ N++GYA+ MS+ Sbjct: 251 QLIYQTGFEKNNMGYASAMSF 271 >A4IKD3.1 A4IKD3_GEOTN ABC-type sugar transport systems, permease components Length = 290 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 147/272 (54%), Positives = 205/272 (75%), Gaps = 3/272 (1%) Query: 1 MKIKKWRADAQALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVL 60 M+ K D +A+ +LLPF +VY +FTI+P+FKG EM+ ++W L+ K+DF+G +NY K++ Sbjct: 1 MRKKLLIQDLKAIPYLLPFFLVYVVFTIFPVFKGFEMSLHEWKLVGKVDFIGIENYKKMI 60 Query: 61 QDREVWEALGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVAS 120 D WE L ++ FV+ TTPTM++L++ LAL+AN K+ L+KF+R+ +F+PS+LSV+V S Sbjct: 61 SDPFFWETLWNTTKFVIYTTPTMILLALGLALLANLKTKLKKFFRAAYFLPSILSVSVIS 120 Query: 121 YLGLFVFQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHL 180 +L +++ QPY G VN+ LHLI + E FW+ + +LAW+AI ++TLWWTVGFN IL L Sbjct: 121 FLAIYMLQPYNGFVNTFLHLIGI---QAEPFWIADKKLAWVAIVVVTLWWTVGFNMILFL 177 Query: 181 SAIQEIPDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTG 240 +A+Q+IPD +YEAA +DGA QMF ITLP L PI K I +LQIIAS+KVF QI ++TG Sbjct: 178 AALQDIPDSLYEAAEIDGASRWQMFIHITLPQLVPIGKVILLLQIIASYKVFAQIMLITG 237 Query: 241 GGPLDSTRPIIQLIYQTGFKSNDLGYAATMSY 272 GGP +TRP+IQ IY+ GF N +GYAATMSY Sbjct: 238 GGPGGTTRPLIQYIYEVGFNKNLMGYAATMSY 269 >C5EHJ8.1 C5EHJ8_9FIRM Sugar ABC transporter permease Length = 298 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 114/265 (43%), Positives = 176/265 (66%), Gaps = 4/265 (1%) Query: 7 RADAQALLFLLPFLIVYGLFTIWPMFKGVEMTFYKWTLIRKMDFLGWDNYSKVLQDREVW 66 R + A F++PFL+ + F ++P+ KG++++ + TL + F+G NY+ + QD+ W Sbjct: 15 RENITAWCFIIPFLLFFLCFLLYPILKGMKLSLFDATLGGRTFFIGIQNYAAMFQDKGFW 74 Query: 67 EALGHSLIFVVLTTPTMLVLSISLALIANRKSMLQKFYRSIFFIPSVLSVAVASYLGLFV 126 +A+ ++L FVV++TPT++++ A+ N + F R+ FF P VLS++V + L +F+ Sbjct: 75 QAMFNTLFFVVISTPTIVLVGFIFAMFINSRLKGTIFIRTCFFSPYVLSMSVVTGLWIFI 134 Query: 127 FQPYTGLVNSVLHLIHLLPGGTEIFWLTETRLAWIAITLITLWWTVGFNFILHLSAIQEI 186 FQPYTGLV + +++ G E++WL L W+AI + T+WWTVGFN IL L+ +Q+I Sbjct: 135 FQPYTGLVTQLTNVL----GIGEMYWLNTKWLVWLAILITTVWWTVGFNMILFLAGLQDI 190 Query: 187 PDEIYEAARLDGAGDRQMFWRITLPYLAPITKTITMLQIIASFKVFMQIYIVTGGGPLDS 246 P++IYEAAR+DGA RQM + +T+P L T + MLQ IASFK+F Q Y++ GGGP Sbjct: 191 PEDIYEAARIDGANSRQMLFSVTVPMLKDTTVLVIMLQTIASFKLFGQTYLMAGGGPGTH 250 Query: 247 TRPIIQLIYQTGFKSNDLGYAATMS 271 TR I+ IY+TGF + +G AA MS Sbjct: 251 TRTIVHYIYETGFTNRRMGRAAAMS 275 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,704,232,291 Number of extensions: 67069349 Number of successful extensions: 258731 Number of sequences better than 1.0e-05: 6052 Number of HSP's gapped: 250830 Number of HSP's successfully gapped: 6062 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)