BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0010.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC41.1 B3KC41_9BACI Regulatory protein ArsR 503 e-141 B1D5T1.1 B1D5T1_9BACL Transcriptional regulator, ArsR family 375 e-102 Q5WBG5.1 Q5WBG5_BACSK Transcriptional regulator 324 6e-87 B6FV89.1 B6FV89_9CLOT Putative uncharacterized protein 294 7e-78 C1I4D1.1 C1I4D1_9CLOT Transcriptional regulator 288 6e-76 >B3KC41.1 B3KC41_9BACI Regulatory protein ArsR Length = 315 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 225/313 (71%), Positives = 275/313 (87%) Query: 1 VLELGFGDPEKLVAVAHALSTRSRVDILHLLNSQNLNVIEIAEALKLPVSTVASNVKVLE 60 +LELGF DPE+LV VAHALSTRSRVDIL LLNS+NLN+IEIAE LKLPVSTVASN+KVLE Sbjct: 1 MLELGFNDPERLVTVAHALSTRSRVDILRLLNSKNLNIIEIAEKLKLPVSTVASNIKVLE 60 Query: 61 AARLINTXXXXASRGAMKVCSRNYDDIHISLNEEKAVRKGAVSVYEIEVPIGHYSDCEVS 120 AA LINT ASRGAMKVCSRNYDD+H +LN + +V KG VYE+++PIGHYSDCEV+ Sbjct: 61 AAELINTELLPASRGAMKVCSRNYDDVHFALNLKNSVPKGVTHVYEVDMPIGHYSDCEVA 120 Query: 121 PTCGMADAEAMLVREDEPAGFYHPKHVGAQIIWFRKGYIEYLLPVEVPKGSRVESLEVSM 180 PTCGMA+A+ +++EDEPA FYHPKHV AQIIW RKGY+EYL+P+++P G+R+ESLE+SM Sbjct: 121 PTCGMANADGYIIKEDEPASFYHPKHVNAQIIWLRKGYLEYLMPMDIPAGARIESLELSM 180 Query: 181 EICSEAPNYDNNWPSDISVWINGVEIGMWTSPGDFGGRRGKLNPAWWWDSSTQYGLLKTW 240 E+CSEAPNYD NWPS+ISVW+NGVEIGMWTSPGDFG RRGKLNP WW+D +TQYG LKTW Sbjct: 181 EMCSEAPNYDQNWPSNISVWVNGVEIGMWTSPGDFGDRRGKLNPNWWYDWATQYGFLKTW 240 Query: 241 RVDRDKTTLDMEKVSDVSLSQLNLTQSPKIRLRIGVNPESVHQGGVNLFGRSFGDYPQEI 300 RVD +KTTLDMEK+S V+L QLN+ SPK+RLRIG+ P++V+QGG+NLFGR FGD+ Q I Sbjct: 241 RVDDEKTTLDMEKISSVTLDQLNIAASPKLRLRIGIKPDAVNQGGLNLFGRQFGDHEQNI 300 Query: 301 LMKLSFTSDEEDQ 313 +M++ +T D++++ Sbjct: 301 IMQVKYTMDQDEE 313 >B1D5T1.1 B1D5T1_9BACL Transcriptional regulator, ArsR family Length = 307 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 175/307 (57%), Positives = 230/307 (74%), Gaps = 2/307 (0%) Query: 1 VLELGFGDPEKLVAVAHALSTRSRVDILHLLNSQ-NLNVIEIAEALKLPVSTVASNVKVL 59 +LEL +P++LV VAHALST +R+ I+ LL ++ NLN+IEIAEAL +PVST A+NVKVL Sbjct: 1 MLELTIDEPDRLVKVAHALSTHTRIGIIKLLLAKPNLNIIEIAEALDIPVSTAATNVKVL 60 Query: 60 EAARLINTXXXXASRGAMKVCSRNYDDIHISLNEEKAVRKGAVSVYEIEVPIGHYSDCEV 119 E A LI T ASRGAMKVCSRN+DD+ + LN A + E+E+PIGH+ + ++ Sbjct: 61 EEAELILTELQPASRGAMKVCSRNFDDVRMILNP-IAYYQNTSKAVEVEMPIGHFINFDI 119 Query: 120 SPTCGMADAEAMLVREDEPAGFYHPKHVGAQIIWFRKGYIEYLLPVEVPKGSRVESLEVS 179 PTCGMA+ ML EDEP FYHP A+IIWFRKG+IEY P ++P G++V+SLE S Sbjct: 120 LPTCGMANTTGMLFIEDEPENFYHPDSRTAEIIWFRKGWIEYRFPKKLPAGAKVKSLEFS 179 Query: 180 MEICSEAPNYDNNWPSDISVWINGVEIGMWTSPGDFGGRRGKLNPAWWWDSSTQYGLLKT 239 +E+CSEAPNY+N+WPS+I+VW+N +EIG W SPGDFG RGKLNP WW DSSTQ+GLLKT Sbjct: 180 LELCSEAPNYNNDWPSEITVWVNDMEIGSWISPGDFGDHRGKLNPPWWNDSSTQHGLLKT 239 Query: 240 WRVDRDKTTLDMEKVSDVSLSQLNLTQSPKIRLRIGVNPESVHQGGVNLFGRSFGDYPQE 299 W ++ ++T+D EK S +L L + Q P I RIG+ P++ HQGG+NLFG+SFGDY Q Sbjct: 240 WAIEESRSTIDNEKSSSTTLRDLQMDQKPFITFRIGLKPDAKHQGGMNLFGKSFGDYAQG 299 Query: 300 ILMKLSF 306 I+M++ + Sbjct: 300 IIMRMQY 306 >Q5WBG5.1 Q5WBG5_BACSK Transcriptional regulator Length = 307 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 152/307 (49%), Positives = 212/307 (69%), Gaps = 3/307 (0%) Query: 1 VLELGFGDPEKLVAVAHALSTRSRVDILHLLNSQNLNVIEIAEALKLPVSTVASNVKVLE 60 +LEL +P +L V HALST RV ++ LL+ + +V E+A + +P+ST ASNV VL+ Sbjct: 1 MLELSIHEPVRLRKVCHALSTDVRVRMVELLSKETYSVHELATLIGIPISTAASNVNVLQ 60 Query: 61 AARLINTXXXXASRGAMKVCSRNYDDIHISLNEEKAVRKGAVSVYEIEVPIGHYSDCEVS 120 A LI T ASRGAMKVC+RN+DDIHI+LN+ ++ YEI +PIGHY D V+ Sbjct: 61 EAGLILTELRPASRGAMKVCTRNFDDIHIALND--GGQRTEKRTYEINMPIGHYVDFSVT 118 Query: 121 PTCGMADAEAMLVREDEPAGFYHPKHVGAQIIWFRKGYIEYLLPVEVPKGSRVESLEVSM 180 PTCGMA+++ +++ ED+P FYHP AQ+IW R G+ EY P + ++ SL S Sbjct: 119 PTCGMANSDGVVLNEDDPVQFYHPDRSTAQMIWTRTGFFEYKFPFALKPKQKIASLLFSC 178 Query: 181 EICSEAPNYDNNWPSDISVWINGVEIGMWTSPGDFGGRRGKLN-PAWWWDSSTQYGLLKT 239 E+CSEAPNYD++WPSDI+VWINGV+IG WTSPGDFG R GK N P W+ ++ TQYG LKT Sbjct: 179 ELCSEAPNYDHDWPSDITVWINGVDIGTWTSPGDFGDRPGKQNPPTWFHNTRTQYGALKT 238 Query: 240 WRVDRDKTTLDMEKVSDVSLSQLNLTQSPKIRLRIGVNPESVHQGGVNLFGRSFGDYPQE 299 W V + + LD ++ V+++ L L P I +RIG+ ++H+GG+NLFG+ FGD+PQ+ Sbjct: 239 WTVTKKQALLDHLPINPVTIADLQLEDHPCITVRIGIKENALHKGGINLFGKEFGDHPQD 298 Query: 300 ILMKLSF 306 + + + F Sbjct: 299 LKLVIEF 305 >B6FV89.1 B6FV89_9CLOT Putative uncharacterized protein Length = 304 Score = 294 bits (753), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 142/297 (47%), Positives = 194/297 (65%), Gaps = 5/297 (1%) Query: 10 EKLVAVAHALSTRSRVDILHLLNSQNLNVIEIAEALKLPVSTVASNVKVLEAARLINTXX 69 E+L + ALS+ R+ IL L + NV EIAE L++P S+ A +V+VLE A LI T Sbjct: 13 EQLALIGKALSSELRLRILSELEERAYNVNEIAECLQIPASSAALHVRVLEEAGLIETEL 72 Query: 70 XXASRGAMKVCSRNYDDIHISLNEEKAVRKGAVSVYEIEVPIGHYSDCEVSPTCGMADAE 129 A RG+MK+C + D I I L +E+ +G + EI +PIG+Y D V PTCG+ + Sbjct: 73 RAAVRGSMKICRKKVDGIFIDLQQEE---EGEID--EIRMPIGNYVDYHVEPTCGIVSQD 127 Query: 130 AMLVREDEPAGFYHPKHVGAQIIWFRKGYIEYLLPVEVPKGSRVESLEVSMEICSEAPNY 189 + EDE + FY+P V A++IWF GY+EY P K + +EVS EICSE Y Sbjct: 128 GYIDVEDEASVFYNPARVNAKLIWFGNGYLEYRFPNVTLKKKTLRKVEVSAEICSEDHEY 187 Query: 190 DNNWPSDISVWINGVEIGMWTSPGDFGGRRGKLNPAWWWDSSTQYGLLKTWRVDRDKTTL 249 + +WPSDI++WIN VE+G W SP DFGGRRGKLNPAWW TQYG+LK W V +D + L Sbjct: 188 NMDWPSDITLWINDVEVGTWESPSDFGGRRGKLNPAWWSSDKTQYGMLKNWCVKKDGSFL 247 Query: 250 DMEKVSDVSLSQLNLTQSPKIRLRIGVNPESVHQGGVNLFGRSFGDYPQEILMKLSF 306 D EK+SD L + NL+ I ++IG+ ++ H+GG+N+FG FGDYPQ+I++KLS+ Sbjct: 248 DGEKISDAGLEKYNLSDKDYISVKIGIKEDAAHKGGINIFGDGFGDYPQDIVLKLSY 304 >C1I4D1.1 C1I4D1_9CLOT Transcriptional regulator Length = 310 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 137/307 (44%), Positives = 198/307 (64%), Gaps = 2/307 (0%) Query: 2 LELGFGDPEKLVAVAHALSTRSRVDILHLLNSQNLNVIEIAEALKLPVSTVASNVKVLEA 61 L + F D +K+ + A ALS+ R+ IL + + V E+AEAL +P+ST A +VKVLE Sbjct: 4 LSVNFNDIDKMASYAKALSSEDRIKILKITANSAPTVNELAEALSIPLSTTAMHVKVLEE 63 Query: 62 ARLINTXXXXASRGAMKVCSRNYDDIHISLNEEKAVRKGAVSVYEIEVPIGHYSDCEVSP 121 LI T A RG KVC RN DDI I LN + K + I +PIG Y +C+++ Sbjct: 64 CGLILTRLEPAVRGTKKVCFRNVDDIFIDLNLQTEENKH--RCHYINMPIGSYVNCDING 121 Query: 122 TCGMADAEAMLVREDEPAGFYHPKHVGAQIIWFRKGYIEYLLPVEVPKGSRVESLEVSME 181 TCGMA+ + + D P FY+P AQIIWF +G++EY P+++ + S +S E Sbjct: 122 TCGMANENSQIGILDNPQTFYYPDRYTAQIIWFEQGFLEYRFPLDILSFGDLTSFNLSFE 181 Query: 182 ICSEAPNYDNNWPSDISVWINGVEIGMWTSPGDFGGRRGKLNPAWWWDSSTQYGLLKTWR 241 CSEAP+Y+ +WPSDI+VW+N VE+ WTSPGDFGGR GKLNP WW SSTQYGLL++++ Sbjct: 182 CCSEAPSYNPHWPSDITVWMNNVELHTWTSPGDFGGRSGKLNPVWWPHSSTQYGLLRSYK 241 Query: 242 VDRDKTTLDMEKVSDVSLSQLNLTQSPKIRLRIGVNPESVHQGGVNLFGRSFGDYPQEIL 301 +D T D VS ++L L++T++P + ++IG+ ++ + G+N+FG FGD+PQ IL Sbjct: 242 IDNTGTYCDEILVSSITLKDLDVTKTPYLAVKIGIKEDAENSRGINIFGEKFGDHPQSIL 301 Query: 302 MKLSFTS 308 + + + S Sbjct: 302 LGIEYNS 308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,890,339,724 Number of extensions: 77219207 Number of successful extensions: 168259 Number of sequences better than 1.0e-05: 56 Number of HSP's gapped: 168180 Number of HSP's successfully gapped: 56 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)