BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0009.p (260 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7B279.1 B7B279_9FIRM Putative uncharacterized protein 215 3e-54 C4V5P5.1 C4V5P5_9FIRM Protein of hypothetical function DUF218 214 7e-54 B4BDT5.1 B4BDT5_CLOTM Putative uncharacterized protein 199 2e-49 A3DHT6.1 A3DHT6_CLOTH Putative uncharacterized protein 198 4e-49 B0TCN9.1 B0TCN9_HELMI Putative uncharacterized protein 194 5e-48 >B7B279.1 B7B279_9FIRM Putative uncharacterized protein Length = 266 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 118/257 (45%), Positives = 150/257 (58%), Gaps = 7/257 (2%) Query: 4 MIYFIKFVYSFVLPPGLFVILLLGLTVWLWRXXXXVWLWRRSRRPAXXXXXXXXXXXXSM 63 M+Y +KF S+VLPPG+F++ L L WLW+ R +R A Sbjct: 15 MVYLLKFGASWVLPPGIFILALFVLAWWLWKK-------RGEKRAAAVLFALTFAFYLLC 67 Query: 64 TPWISNLLMGGLERQYDKPELLQGDVIVVLGGGASSGTPDIDGEGNLFGSAANRLLTAVR 123 T ++ MG LE Y PE GDVI++LGGGA S TPD+DG G L S A+RLLTAVR Sbjct: 68 TGLVAEKTMGWLESAYQPPERPAGDVIIMLGGGAYSDTPDVDGTGTLCASPASRLLTAVR 127 Query: 124 LYRQTGLPILFSGGQVFPDSGNEADIAKRQLIGLGVPERDILAENRSLNTEQNAANTAAM 183 L RQ +PIL SGGQV+ D+G EA IAKR L+ LGVPE IL E RS+NT QNA +A + Sbjct: 128 LQRQLDVPILLSGGQVYEDTGAEAKIAKRVLMSLGVPEDKILTETRSINTSQNARFSAEI 187 Query: 184 MNSKGLSHPILVTSAFHMPRAMAFFKDNGLAPLAYPTDYTDSRGSGLYPAMFTPSPGAMN 243 + GLSHPILVTSAFHM R++ F G+A +PTDY + + P A+ Sbjct: 188 LRENGLSHPILVTSAFHMKRSVLNFAKQGVAVEPFPTDYMVAHHPVFHYTKLRPQTEALL 247 Query: 244 NTGTALKEYLGLLAARF 260 + T L+E L R+ Sbjct: 248 DNVTVLQETLRTFVTRY 264 >C4V5P5.1 C4V5P5_9FIRM Protein of hypothetical function DUF218 Length = 253 Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 119/257 (46%), Positives = 157/257 (61%), Gaps = 7/257 (2%) Query: 4 MIYFIKFVYSFVLPPGLFVILLLGLTVWLWRXXXXVWLWRRSRRPAXXXXXXXXXXXXSM 63 MIY +KF +++LPPG+FV+ +LGL V+LW+ R R A Sbjct: 2 MIYILKFGAAWILPPGIFVLAMLGLAVYLWKR-------RHQSRAAMLLCALAAMLYLLS 54 Query: 64 TPWISNLLMGGLERQYDKPELLQGDVIVVLGGGASSGTPDIDGEGNLFGSAANRLLTAVR 123 +S+ LMG LER Y PE+ QGDVI++LGGGA + D+DG G L S ++RLL A R Sbjct: 55 IGAVSDRLMGELERTYPVPEVPQGDVIIMLGGGAIADVQDVDGMGMLAQSPSSRLLAAYR 114 Query: 124 LYRQTGLPILFSGGQVFPDSGNEADIAKRQLIGLGVPERDILAENRSLNTEQNAANTAAM 183 L+ +T LPIL SGGQVF D+G+EA+IA+R L LGVP+ I E RSL T QNA TA + Sbjct: 115 LHLRTHLPILLSGGQVFSDTGSEAEIARRVLRSLGVPDEMIRVETRSLTTGQNAHYTAEI 174 Query: 184 MNSKGLSHPILVTSAFHMPRAMAFFKDNGLAPLAYPTDYTDSRGSGLYPAMFTPSPGAMN 243 + +GL HPILVTSAFH+PRA+ F+ G+ YPTD+ S S LY F P+ GA+ Sbjct: 175 LRREGLMHPILVTSAFHLPRAVLNFEKQGITVTPYPTDFLVSGDSQLYLLKFAPNAGALL 234 Query: 244 NTGTALKEYLGLLAARF 260 L+E L + R+ Sbjct: 235 TNTVYLQEKLRIAVTRY 251 >B4BDT5.1 B4BDT5_CLOTM Putative uncharacterized protein Length = 251 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 155/257 (60%), Gaps = 9/257 (3%) Query: 4 MIYFIKFVY-SFVLPPGLFVILLLGLTVWLWRXXXXVWLWRRSRRPAXXXXXXXXXXXXS 62 M+Y +KF Y +F+LPPG ++LL + W ++ ++ + Sbjct: 1 MLYLVKFFYQTFLLPPGCIILLLAAASFWQYK--------KKDPKCTKLFVIITAILYLI 52 Query: 63 MTPWISNLLMGGLERQYDKPELLQGDVIVVLGGGASSGTPDIDGEGNLFGSAANRLLTAV 122 TP + + L+ LE++Y P L GDVI++LGGGA + TP+++G+G+L AANRLLT V Sbjct: 53 STPMVCDSLIWSLEKKYQPPSELNGDVIIMLGGGAFADTPNVNGKGHLSSIAANRLLTCV 112 Query: 123 RLYRQTGLPILFSGGQVFPDSGNEADIAKRQLIGLGVPERDILAENRSLNTEQNAANTAA 182 +LY + +PI+ SGGQ+ + +E +IA+ L+ LGVPE I+ ENRSLNT QNA T Sbjct: 113 QLYYKLDVPIIISGGQIPGHTTSEGEIARNILLSLGVPEEKIIVENRSLNTTQNAFYTKE 172 Query: 183 MMNSKGLSHPILVTSAFHMPRAMAFFKDNGLAPLAYPTDYTDSRGSGLYPAMFTPSPGAM 242 +++ G + PILVTSAFHM RA+ F+ N + + YPTDY + + F PS A+ Sbjct: 173 LLDKHGFNKPILVTSAFHMKRAVKQFEKNEVNVIPYPTDYQTNSIRKITFMDFVPSAEAL 232 Query: 243 NNTGTALKEYLGLLAAR 259 ++KEY+G++A+R Sbjct: 233 QKFYFSVKEYVGIVASR 249 >A3DHT6.1 A3DHT6_CLOTH Putative uncharacterized protein Length = 251 Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 154/257 (59%), Gaps = 9/257 (3%) Query: 4 MIYFIKFVY-SFVLPPGLFVILLLGLTVWLWRXXXXVWLWRRSRRPAXXXXXXXXXXXXS 62 M+Y +KF Y +F+LPPG ++LL + W ++ ++ + Sbjct: 1 MLYLVKFFYQTFLLPPGCIILLLAAASFWQYK--------KKDPKCTKLFVIITAILYLI 52 Query: 63 MTPWISNLLMGGLERQYDKPELLQGDVIVVLGGGASSGTPDIDGEGNLFGSAANRLLTAV 122 TP + + L+ LE++Y P L GDVI++LGGGA + TP+++G+G+L AANRLLT V Sbjct: 53 STPMVCDSLIWSLEKKYQPPSELNGDVIIMLGGGAFADTPNVNGKGHLSSIAANRLLTCV 112 Query: 123 RLYRQTGLPILFSGGQVFPDSGNEADIAKRQLIGLGVPERDILAENRSLNTEQNAANTAA 182 +LY + +PI+ SGGQ+ + +E +IA L+ LGVPE I+ ENRSLNT QNA T Sbjct: 113 QLYYKLDVPIIISGGQIPGHTTSEGEIAMNILLSLGVPEEKIIVENRSLNTTQNAFYTKE 172 Query: 183 MMNSKGLSHPILVTSAFHMPRAMAFFKDNGLAPLAYPTDYTDSRGSGLYPAMFTPSPGAM 242 +++ G + PILVTSAFHM RA+ F+ N + + YPTDY + + F PS A+ Sbjct: 173 LLDKHGFNKPILVTSAFHMKRAVKQFEKNEVNVIPYPTDYQTNSIRKITFMDFVPSAEAL 232 Query: 243 NNTGTALKEYLGLLAAR 259 ++KEY+G++A+R Sbjct: 233 QKFYFSVKEYVGIVASR 249 >B0TCN9.1 B0TCN9_HELMI Putative uncharacterized protein Length = 252 Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 112/252 (44%), Positives = 153/252 (60%), Gaps = 8/252 (3%) Query: 5 IYFIKFVYSFVLPPGLFVILLLGLTVWLWRXXXXVWLWRRSRRPAXXXXXXXXXXXXSMT 64 ++ IKF+YSF+LPPGLF+ LLL + + + PA Sbjct: 4 LFAIKFIYSFMLPPGLFIPLLLLAAL--------YYRRKHQLGPARFSTAMALLLYLFSI 55 Query: 65 PWISNLLMGGLERQYDKPELLQGDVIVVLGGGASSGTPDIDGEGNLFGSAANRLLTAVRL 124 + ++ LE +Y P+ GDVI++LGGGA+ TPDIDG G + G +ANRLLTA RL Sbjct: 56 SAVGETMIRSLENRYLPPDKPSGDVIIMLGGGATMDTPDIDGLGQMTGGSANRLLTAARL 115 Query: 125 YRQTGLPILFSGGQVFPDSGNEADIAKRQLIGLGVPERDILAENRSLNTEQNAANTAAMM 184 ++ TG PI+ S GQVF +SGNE+ IA RQL GLGVPE I+ E S NTE+NA T ++ Sbjct: 116 HQLTGAPIIVSAGQVFENSGNESRIAFRQLTGLGVPESMIIVEEMSRNTEENARYTKEIL 175 Query: 185 NSKGLSHPILVTSAFHMPRAMAFFKDNGLAPLAYPTDYTDSRGSGLYPAMFTPSPGAMNN 244 +++G PILVTSAFHM R++ F G++ L +PTDY +R + + PS AM+N Sbjct: 176 DARGFHKPILVTSAFHMERSVGHFSKLGVSTLPFPTDYRVNRQARYSLNDWAPSAVAMSN 235 Query: 245 TGTALKEYLGLL 256 A+KEYLGL+ Sbjct: 236 ASLAMKEYLGLI 247 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,601,316,312 Number of extensions: 65475506 Number of successful extensions: 152198 Number of sequences better than 1.0e-05: 732 Number of HSP's gapped: 151904 Number of HSP's successfully gapped: 732 Length of query: 260 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 127 Effective length of database: 1,807,701,208 Effective search space: 229578053416 Effective search space used: 229578053416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)