BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0006.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97DG1.1 Q97DG1_CLOAB Sensor protein EC=2.7.13.3 404 e-111 A6M3F1.1 A6M3F1_CLOB8 Sensor protein EC=2.7.13.3 399 e-109 B1D8L6.1 B1D8L6_9BACL Sensor protein EC=2.7.13.3 142 2e-32 C0Z620.1 C0Z620_BREBN Two-component sensor histidine kinase EC=2... 135 3e-30 B5CTC8.1 B5CTC8_9FIRM Sensor protein EC=2.7.13.3 134 6e-30 >Q97DG1.1 Q97DG1_CLOAB Sensor protein EC=2.7.13.3 Length = 350 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/253 (77%), Positives = 219/253 (86%) Query: 1 LKRKDEIGELYKHFNKMEHRLQLAHREQTDMIAAIAHDLKTPLTSINGFTELLATHKDLP 60 L+ DEIG+LY HFN ME RLQLAH+EQTDMIAAIAHDLK PLTSINGF ELLA K L Sbjct: 96 LRSNDEIGDLYNHFNNMEKRLQLAHKEQTDMIAAIAHDLKAPLTSINGFAELLAMQKGLS 155 Query: 61 ETEKQEYYELIQRKSEYMVELLNDFSSFTKEKLELESMIATPVKATELFEDIAFEYEYEL 120 E EKQEYYELIQ+KS+YM EL+NDF SFTKEKL+LESM PV A++LFE+IA EYE+EL Sbjct: 156 ENEKQEYYELIQKKSKYMAELINDFLSFTKEKLDLESMTVKPVDASKLFENIALEYEHEL 215 Query: 121 AGLDIELTCRHSFTDSIWLTVNEPMIRRVFGNLFSNAVRYGGKNKLKVYMTGYLREHYAY 180 +GLD EL +H FT ++ L VNE MI RVFGNLFSN VRYGGKN+LKVYMTGY + YAY Sbjct: 216 SGLDCELVYKHLFTGNMMLMVNEIMIGRVFGNLFSNVVRYGGKNELKVYMTGYSQGSYAY 275 Query: 181 FQIEDNGIGVPDKDMSSLFLKFFTVDQSRQIQKGGLGLGLASCKSIIEHHGGEIVAYSSE 240 F+IEDNGIGVPDKD+SSLFLKFFTVD+SRQI+ GG+GLGLASCKSIIE+HGGEI AYSSE Sbjct: 276 FEIEDNGIGVPDKDISSLFLKFFTVDKSRQIENGGIGLGLASCKSIIEYHGGEIYAYSSE 335 Query: 241 YGGLGIRFSLPLA 253 YGGLGI+FSLPLA Sbjct: 336 YGGLGIKFSLPLA 348 >A6M3F1.1 A6M3F1_CLOB8 Sensor protein EC=2.7.13.3 Length = 350 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/253 (75%), Positives = 215/253 (84%) Query: 1 LKRKDEIGELYKHFNKMEHRLQLAHREQTDMIAAIAHDLKTPLTSINGFTELLATHKDLP 60 L+ DEIG+LY HFN ME RLQLAH+EQ DMIAAIAHDLK PLTSINGF ELLA K LP Sbjct: 96 LRSNDEIGDLYNHFNNMEKRLQLAHKEQMDMIAAIAHDLKAPLTSINGFAELLAMQKGLP 155 Query: 61 ETEKQEYYELIQRKSEYMVELLNDFSSFTKEKLELESMIATPVKATELFEDIAFEYEYEL 120 E EKQEYYELIQ+KS+YM EL+NDF SF KEKL LESM PV A++LFE+IA EYE+EL Sbjct: 156 ENEKQEYYELIQKKSKYMAELINDFVSFIKEKLNLESMTVKPVNASKLFENIALEYEHEL 215 Query: 121 AGLDIELTCRHSFTDSIWLTVNEPMIRRVFGNLFSNAVRYGGKNKLKVYMTGYLREHYAY 180 +G D EL +H F +++ L VNE MI RVFGNLFSN VRYGGKN+LKVYMTGY + YAY Sbjct: 216 SGFDYELIYKHLFKENMMLMVNEIMIGRVFGNLFSNVVRYGGKNELKVYMTGYSQGAYAY 275 Query: 181 FQIEDNGIGVPDKDMSSLFLKFFTVDQSRQIQKGGLGLGLASCKSIIEHHGGEIVAYSSE 240 F+IEDNGIGVPDKD+SSLFLKFFTVD+SRQI+ GG+GLGLASCKSIIE+HGGEI AYSSE Sbjct: 276 FEIEDNGIGVPDKDISSLFLKFFTVDKSRQIENGGIGLGLASCKSIIEYHGGEIYAYSSE 335 Query: 241 YGGLGIRFSLPLA 253 YGGLGI+FSLPL Sbjct: 336 YGGLGIKFSLPLV 348 >B1D8L6.1 B1D8L6_9BACL Sensor protein EC=2.7.13.3 Length = 491 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 135/257 (52%), Gaps = 9/257 (3%) Query: 4 KDEIGELYKHFNKMEHRLQLAHREQT-------DMIAAIAHDLKTPLTSINGFTE-LLAT 55 KDEIG+L F M R+Q + R Q ++IA+I+HDL+TPLT+I G+ + ++ Sbjct: 228 KDEIGQLGMAFEDMRSRMQDSIRIQAQYEENRKELIASISHDLRTPLTAIRGYIDGVMEG 287 Query: 56 HKDLPETEKQEYYELIQRKSEYMVELLNDFSSFTKEKLELESMIATPVKATELFEDIAFE 115 D PE + Y + I K+ + L+N+ ++K L + + V+ D++ E Sbjct: 288 VADTPE-KSARYMKTIDAKAAELEHLINELFLYSKLDLNRQPFLFEAVELLPFLNDLSEE 346 Query: 116 YEYELAGLDIELTCRHSFTDSIWLTVNEPMIRRVFGNLFSNAVRYGGKNKLKVYMTGYLR 175 ++EL I ++ ++ +RV N+ SN+VRY K + + YL Sbjct: 347 LQFELEKKSIAFEPDIHVPAGSFVRMDRDQFKRVLNNIISNSVRYMDKPLPVIRIKAYLE 406 Query: 176 EHYAYFQIEDNGIGVPDKDMSSLFLKFFTVDQSRQIQKGGLGLGLASCKSIIEHHGGEIV 235 + A +I DNGIG+ DKD+ +F +F+ D+SR ++ GG GLGLA K I+E H GEI Sbjct: 407 GNQAVMKISDNGIGMKDKDLEHMFERFYRADESRSVKTGGSGLGLAIAKQIMESHNGEIT 466 Query: 236 AYSSEYGGLGIRFSLPL 252 A S G I LP+ Sbjct: 467 AASKWTAGTTISLYLPI 483 >C0Z620.1 C0Z620_BREBN Two-component sensor histidine kinase EC=2.7.3.- Length = 461 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 6/250 (2%) Query: 5 DEIGELYKHFNKMEHRLQLAHREQTDMIAAIAHDLKTPLTSINGFTELLATHKDLPETEK 64 DE G+L+++F +M L+LA Q +MIA+IAHD +TPLT+I G+ + + + T+ Sbjct: 213 DEFGQLFRYFGEMVDELRLAEERQAEMIASIAHDFRTPLTTIKGYASYIGSGRVTDMTKI 272 Query: 65 QEYYELIQRKSEYMVELLNDFSSFTKEKLELESMIATPVKATELFEDIAFEYEYEL--AG 122 Q+ I+ K+ + +LL++ FT + E+ I + I +Y + AG Sbjct: 273 QKQMGKIELKTTDLEKLLDELQDFTTQSSEVRLSI-NRIHVKSFLRGIIEDYLPRIKEAG 331 Query: 123 LDIELTCRHSFTDSIWLTVNEPMIRRVFGNLFSNAVRYGGKNKLKVYMTGYLREHYAYFQ 182 L + R ++ + + +E +RRV NL +NA+ Y K +Y+T RE + F Sbjct: 332 LTFQWKLR--ISNELHIEADETKLRRVMENLLNNAIHY-NKPDGSIYLTCDQREGHVLFT 388 Query: 183 IEDNGIGVPDKDMSSLFLKFFTVDQSRQIQKGGLGLGLASCKSIIEHHGGEIVAYSSEYG 242 + D G G+ +D++ +F KF+ ++SR GG GLGL CKSI+ HGG+++ S Sbjct: 389 VIDKGEGIAAEDLTKIFTKFYRAEKSRNRNSGGTGLGLTICKSIVRLHGGDLMVNSELGM 448 Query: 243 GLGIRFSLPL 252 G F++P Sbjct: 449 GSSFSFTIPF 458 >B5CTC8.1 B5CTC8_9FIRM Sensor protein EC=2.7.13.3 Length = 351 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 135/256 (52%), Gaps = 13/256 (5%) Query: 5 DEIGELYKHFNKMEHRLQLA-------HREQTDMIAAIAHDLKTPLTSINGFTE-LLATH 56 DEIG+L + F +M RL++ RE ++I+ I+HDLKTP+T+I G+ E ++ Sbjct: 89 DEIGQLCRDFEEMRLRLKVQAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGV 148 Query: 57 KDLPETEKQEYYELIQRKSEYMVELLNDFSSFTKEKLELESMIATPVKATELFEDIAFEY 116 D PE + Y I K+ M L+N+ + ++K T + A F D A + Sbjct: 149 ADTPE-KMDRYIRTIYNKANEMNLLINELTLYSKIDTNRIPYNFTTISAKGYFGDCAEDL 207 Query: 117 EYELAGLDIELTCRHSFTDSIWLTVNEPMIRRVFGNLFSNAVRYGGKNKLKVYMTGYLRE 176 EL E T R+ D + V+ +RRV N+ SN+++Y K K+++ M +++ Sbjct: 208 SVELESKGAEFTYRNFMDDDCKVIVDPEQLRRVINNIVSNSLKYTDKPKVEITMD--VKD 265 Query: 177 HYAYFQIE--DNGIGVPDKDMSSLFLKFFTVDQSRQIQKGGLGLGLASCKSIIEHHGGEI 234 + QIE DNG G+ KD+ +F +F+ D SR KGG G+GL+ K I+E HGG I Sbjct: 266 VGDFIQIELGDNGRGIAAKDLPFIFDRFYRADASRNSSKGGSGIGLSIVKKIVEEHGGNI 325 Query: 235 VAYSSEYGGLGIRFSL 250 A S E G + F + Sbjct: 326 WATSEEGVGTTMYFVI 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,531,626,226 Number of extensions: 62859251 Number of successful extensions: 271688 Number of sequences better than 1.0e-05: 24689 Number of HSP's gapped: 241768 Number of HSP's successfully gapped: 24754 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)