BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0003.p (157 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BDL4.1 Q2BDL4_9BACI YbaK/ebsC family protein 171 2e-41 A4J9H1.1 A4J9H1_DESRM YbaK/ebsC protein 160 3e-38 C3EN01.1 C3EN01_BACTK Putative uncharacterized protein 158 1e-37 C2P131.1 C2P131_BACCE Putative uncharacterized protein 158 1e-37 C2YU18.1 C2YU18_BACCE Putative uncharacterized protein 158 1e-37 >Q2BDL4.1 Q2BDL4_9BACI YbaK/ebsC family protein Length = 158 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 107/157 (68%) Query: 1 MQVTKTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVAHSGVNLY 60 M KTNAMR+LD K+ Y YD++DG+I G +VA K+G PE V+KTLVA +G N+Y Sbjct: 1 MAQGKTNAMRLLDAAKLEYNSLSYDSKDGKIDGVSVAGKIGRDPELVYKTLVAQAGRNVY 60 Query: 61 VFVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSA 120 VF+IPV M+PVKD+ K TGY+RGGCSPVGMKKLYPTFIDS Sbjct: 61 VFIIPVEAELDLKKAAKAAGEKKVEMIPVKDIQKLTGYIRGGCSPVGMKKLYPTFIDSQG 120 Query: 121 GALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 L ++ VSGGKIGLQ+ELAPE+L +I A + +L+K Sbjct: 121 EQLESIIVSGGKIGLQIELAPERLKELIEAEWKDLVK 157 >A4J9H1.1 A4J9H1_DESRM YbaK/ebsC protein Length = 161 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 80/154 (51%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 5 KTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVAH-SGVNLYVFV 63 KTNAMRILD +KI Y+++ YD+ DG+I G +VAEKVG P++V+KTLVA + LYVF+ Sbjct: 8 KTNAMRILDGKKIDYDVYTYDSNDGKIDGVSVAEKVGKDPQSVYKTLVAQGNSKTLYVFI 67 Query: 64 IPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSSAGAL 123 +PV M+PVKD+ K TGY+RGGCSP+GMKK Y T ID SA L Sbjct: 68 VPVEEELDLKKAAKATGEKKVDMIPVKDIQKHTGYIRGGCSPLGMKKHYKTLIDDSAKGL 127 Query: 124 ATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 + VSGGKIGLQ+ELA +LA V A ++ K Sbjct: 128 EKIIVSGGKIGLQIELAVAELASVTEAEIIDITK 161 >C3EN01.1 C3EN01_BACTK Putative uncharacterized protein Length = 158 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 1 MQVTKTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVAH-SGVNL 59 M+ KTNAMRILD KI Y + YD +DG+I G +VAEK+G V+KTL+A + N Sbjct: 1 MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY 60 Query: 60 YVFVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSS 119 +VF+IPV M+PVKD+ K +GY+RGGCSPVGMKKL+ T ID S Sbjct: 61 HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDES 120 Query: 120 AGALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 A +L TM VSGGKIG+Q+EL E LA V A F E+ K Sbjct: 121 AQSLETMIVSGGKIGIQIELKVEDLAKVTRAQFGEVTK 158 >C2P131.1 C2P131_BACCE Putative uncharacterized protein Length = 158 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 1 MQVTKTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVAH-SGVNL 59 M+ KTNAMRILD KI Y + YD +DG+I G +VAEK+G V+KTL+A + N Sbjct: 1 MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY 60 Query: 60 YVFVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSS 119 +VF+IPV M+PVKD+ K +GY+RGGCSPVGMKKL+ T ID S Sbjct: 61 HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDES 120 Query: 120 AGALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 A +L TM VSGGKIG+Q+EL E LA V A F E+ K Sbjct: 121 AQSLETMIVSGGKIGIQIELKVEDLAKVTRAQFGEVTK 158 >C2YU18.1 C2YU18_BACCE Putative uncharacterized protein Length = 158 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/158 (51%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 1 MQVTKTNAMRILDTRKIAYEIHMYDNEDGQIHGTAVAEKVGLPPETVFKTLVAH-SGVNL 59 M+ KTNAMRILD KI Y + YD +DG+I G +VAEK+G V+KTL+A + N Sbjct: 1 MKKDKTNAMRILDKEKIEYSMMSYDLDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY 60 Query: 60 YVFVIPVXXXXXXXXXXXXXXXXXXXMLPVKDLLKWTGYVRGGCSPVGMKKLYPTFIDSS 119 +VF+IPV M+PVKD+ K +GY+RGGCSPVGMKKL+ T ID S Sbjct: 61 HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDQS 120 Query: 120 AGALATMAVSGGKIGLQMELAPEQLAGVINAGFCELIK 157 A AL TM VSGGKIG+Q+EL + LA V A F E+ K Sbjct: 121 AQALETMIVSGGKIGIQIELKVDDLAKVTRAQFGEITK 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 821,979,017 Number of extensions: 27471574 Number of successful extensions: 59539 Number of sequences better than 1.0e-05: 802 Number of HSP's gapped: 58658 Number of HSP's successfully gapped: 802 Length of query: 157 Length of database: 3,060,696,203 Length adjustment: 118 Effective length of query: 39 Effective length of database: 1,949,016,433 Effective search space: 76011640887 Effective search space used: 76011640887 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)