BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0504.0002.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJE3.1 B3KJE3_9BACI Putative uncharacterized protein                119   1e-25
B1DK31.1 B1DK31_9BACL Putative uncharacterized protein                117   3e-25
C0ZEW2.1 C0ZEW2_BREBN Putative uncharacterized protein                 87   5e-16
A3I9W1.1 A3I9W1_9BACI Putative uncharacterized protein                 63   7e-09

>B3KJE3.1 B3KJE3_9BACI Putative uncharacterized protein
          Length = 83

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 67/83 (80%)

Query: 1  VAKAKVAKRPTRDEFVLEEIGNQLTEAMQEASEILLTVWGKEEQVRGTIVGMDPRTGKVH 60
          +AKAKV KRPTRDEFVLEE+GNQLTEA QE S I+LTVWG EE VRG I  MD RTGKVH
Sbjct: 1  MAKAKVPKRPTRDEFVLEELGNQLTEAYQEESIIVLTVWGWEEAVRGQIDQMDSRTGKVH 60

Query: 61 VSRGEELIKVPFMDIMAMDYPRD 83
          + +   + KVPFMDIM ++YPRD
Sbjct: 61 MKQNGVITKVPFMDIMEVNYPRD 83


>B1DK31.1 B1DK31_9BACL Putative uncharacterized protein
          Length = 83

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 64/83 (77%)

Query: 1  VAKAKVAKRPTRDEFVLEEIGNQLTEAMQEASEILLTVWGKEEQVRGTIVGMDPRTGKVH 60
          +AKAKV KRPTRDEFVLEEIGNQL+EA  E S I+LTVWG+EE V+G I  MD RTGKVH
Sbjct: 1  MAKAKVPKRPTRDEFVLEEIGNQLSEAFYETSTIVLTVWGREEPVQGVITAMDSRTGKVH 60

Query: 61 VSRGEELIKVPFMDIMAMDYPRD 83
          V     L KVPFMDIM + Y R+
Sbjct: 61 VETSSGLDKVPFMDIMNVSYSRN 83


>C0ZEW2.1 C0ZEW2_BREBN Putative uncharacterized protein
          Length = 81

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 54/80 (67%)

Query: 1  VAKAKVAKRPTRDEFVLEEIGNQLTEAMQEASEILLTVWGKEEQVRGTIVGMDPRTGKVH 60
          +AK+   KRPTRDEF LEE+GNQL EA  +  E  LTVWG  E++RG I+ +D RT  VH
Sbjct: 1  MAKSTTPKRPTRDEFELEELGNQLVEAKDDGDERALTVWGFPEKIRGRIIVLDSRTRLVH 60

Query: 61 VSRGEELIKVPFMDIMAMDY 80
          V   E +  +PF+DIM + Y
Sbjct: 61 VEENETIRIIPFLDIMKVSY 80


>A3I9W1.1 A3I9W1_9BACI Putative uncharacterized protein
          Length = 105

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 5   KVAKRPTRDEFVLEEIGNQLTEAMQEASEILLTVWGKEEQVRGTIVGMDPRTGKVHV-SR 63
           K +K+P RDEF LEEI N LTEAMQ     + T++ +E+ + GT+  MD  T  +H+  +
Sbjct: 27  KESKQPERDEFDLEEIANSLTEAMQGNQTKVFTIYKQEDSLSGTVSKMDANTKLIHIKDK 86

Query: 64  GEELIKVPFMDIMAM 78
              + KV F+DI+ +
Sbjct: 87  YMNIHKVHFLDILKI 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 461,517,208
Number of extensions: 14808842
Number of successful extensions: 48278
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 48281
Number of HSP's successfully gapped: 4
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)