BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0504.0001.p (175 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9N0.1 B3K9N0_9BACI Activator of Hsp90 ATPase 1 family protein 178 1e-43 C3BKN5.1 C3BKN5_9BACI Aha1 domain superfamily 153 7e-36 C3B3U7.1 C3B3U7_BACMY Aha1 domain superfamily 152 9e-36 C3ALV1.1 C3ALV1_BACMY Aha1 domain superfamily 152 9e-36 B1DAA1.1 B1DAA1_9BACL Activator of Hsp90 ATPase 1 family protein 150 5e-35 >B3K9N0.1 B3K9N0_9BACI Activator of Hsp90 ATPase 1 family protein Length = 160 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/150 (56%), Positives = 103/150 (68%) Query: 16 MIAALQASPQGATAVFERYYKHPVNRVWAMLTDNTLLAKWFPELRVQDLSAGGSMKFDMG 75 M+A ++ G T FER KH V +VW+ LTDN L +WF EL+V+DL GG + FDM Sbjct: 1 MLAVVRQDEFGTTVRFERRLKHSVEKVWSYLTDNDKLKQWFSELKVEDLRQGGRITFDMQ 60 Query: 76 DGHFEVMEIKDMILNSILEYTWGNDRVRFELSPDGDGCRLLLIESITEITGHTAKDLSGW 135 DG FE EI D S+LEYTWG DRVRFEL P+ +GCRL+LIE+IT IT HT KD++GW Sbjct: 61 DGTFEEFEITDYRELSVLEYTWGEDRVRFELHPEAEGCRLVLIETITNITDHTPKDIAGW 120 Query: 136 HVCLDVIGVLLDGGELNNRKQVWEQWYAEY 165 VCLDVI LLDG L +RK W + Y +Y Sbjct: 121 DVCLDVIEALLDGRTLESRKDAWSEKYEQY 150 >C3BKN5.1 C3BKN5_9BACI Aha1 domain superfamily Length = 186 Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 16 MIAALQASPQGATAVFERYYKHPVNRVWAMLTDNTLLAKWFPELRVQDLSAGGSMKFDM- 74 M+A ++ A F R H V +VWA+LT+N LA+W P L V++L GG +KFDM Sbjct: 22 MLALIEKIDNEYVAQFNRSLNHAVEQVWAVLTENDKLARWMPNLYVENLRKGGIIKFDMM 81 Query: 75 -GDGHFEVMEIKDMILNSILEYTWGNDRVRFELSPDGDGCRLLLIESITEITGHTAKDLS 133 G G+F + I D +NS+LE+TWG DRVRFE+ + DGC L+L E I EI HT KDLS Sbjct: 82 DGSGNFIDINILDCQVNSVLEFTWGEDRVRFEVHKNPDGCLLILKEFIHEINEHTPKDLS 141 Query: 134 GWHVCLDVIGVLLDGGELNNRKQVWEQWYAEYTRLV 169 GWH+CL++ +LDG +++ K WE+WY Y ++ Sbjct: 142 GWHICLEIFSAVLDGHDMDFPKDEWEKWYKRYKLVI 177 >C3B3U7.1 C3B3U7_BACMY Aha1 domain superfamily Length = 165 Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 16 MIAALQASPQGATAVFERYYKHPVNRVWAMLTDNTLLAKWFPELRVQDLSAGGSMKFDM- 74 M+A ++ A F R H V +VWA+LT+N LA+W P L V++L GG +KFDM Sbjct: 1 MLALIEKIDNEYVAQFNRSLNHAVEQVWAVLTENDKLARWMPNLYVENLRKGGIIKFDMM 60 Query: 75 -GDGHFEVMEIKDMILNSILEYTWGNDRVRFELSPDGDGCRLLLIESITEITGHTAKDLS 133 G G+F + I D +NS+LE+TWG DRVRFE+ + DGC L+L E I EI HT KDLS Sbjct: 61 DGSGNFIDINILDCQVNSVLEFTWGEDRVRFEVHKNPDGCLLILKEFIHEINEHTPKDLS 120 Query: 134 GWHVCLDVIGVLLDGGELNNRKQVWEQWYAEYTRLV 169 GWH+CL++ +LDG +++ K WE+WY Y ++ Sbjct: 121 GWHICLEIFSSVLDGHDMDFPKDEWEKWYKRYKLVI 156 >C3ALV1.1 C3ALV1_BACMY Aha1 domain superfamily Length = 165 Score = 152 bits (385), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%) Query: 16 MIAALQASPQGATAVFERYYKHPVNRVWAMLTDNTLLAKWFPELRVQDLSAGGSMKFDM- 74 M+A ++ A F R H V +VWA+LT+N LA+W P L V++L GG +KFDM Sbjct: 1 MLALIEKIDNEYVAQFNRSLNHAVEQVWAVLTENDKLARWMPNLYVENLRKGGIIKFDMM 60 Query: 75 -GDGHFEVMEIKDMILNSILEYTWGNDRVRFELSPDGDGCRLLLIESITEITGHTAKDLS 133 G G+F + I D +NS+LE+TWG DRVRFE+ + DGC L+L E I EI HT KDLS Sbjct: 61 DGSGNFIDINILDCQVNSVLEFTWGEDRVRFEVHKNPDGCLLILKEFIHEINEHTPKDLS 120 Query: 134 GWHVCLDVIGVLLDGGELNNRKQVWEQWYAEYTRLV 169 GWH+CL++ +LDG +++ K WE+WY Y ++ Sbjct: 121 GWHICLEIFSSVLDGHDMDFPKDEWEKWYKRYKLVI 156 >B1DAA1.1 B1DAA1_9BACL Activator of Hsp90 ATPase 1 family protein Length = 168 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 74/153 (48%), Positives = 95/153 (62%), Gaps = 2/153 (1%) Query: 16 MIAALQASPQGATAVFERYYKHPVNRVWAMLTDNTLLAKWFPELRVQDLSAGGSMKFDMG 75 M+A + G T FER H VW+ TDN L KWF ELRV+DL GG + F+MG Sbjct: 9 MLATIAKKGAGYTVTFERRLNHSKEDVWSYFTDNEKLPKWFSELRVEDLREGGHLSFNMG 68 Query: 76 DGHFEVMEIKDMILNSILEYTWGND-RVRFELSPDGDGCRLLLIESITEITGHTAKDLSG 134 DG +E M I ++L +TWG D VRFE + GC+L+LIESI + + HT KDL+G Sbjct: 69 DGSYETMTITAYEPLAVLAFTWGEDMAVRFEFRGEDGGCKLVLIESIYKPSEHTPKDLAG 128 Query: 135 WHVCLDVIGVLLDGGE-LNNRKQVWEQWYAEYT 166 WHVCLDVI LLD G+ L +RK W+ W+ +Y Sbjct: 129 WHVCLDVIASLLDSGQPLADRKASWQHWHQKYA 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,089,386,315 Number of extensions: 45067598 Number of successful extensions: 82909 Number of sequences better than 1.0e-05: 123 Number of HSP's gapped: 82871 Number of HSP's successfully gapped: 123 Length of query: 175 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 49 Effective length of database: 1,873,648,313 Effective search space: 91808767337 Effective search space used: 91808767337 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)