BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0031.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJV9.1 C0ZJV9_BREBN Probable transcriptional regulator 248 2e-64 Q9KBG3.1 Q9KBG3_BACHD Transcriptional regulator (TetR/AcrR family) 224 3e-57 B1DD37.1 B1DD37_9BACL Transcriptional regulator, TetR family 167 7e-40 C2W331.1 C2W331_BACCE Transcription regulator, TetR/AcrR 134 6e-30 C2PQ49.1 C2PQ49_BACCE Transcription regulator, TetR/AcrR 130 5e-29 >C0ZJV9.1 C0ZJV9_BREBN Probable transcriptional regulator Length = 200 Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 112/185 (60%), Positives = 146/185 (78%) Query: 10 EKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQYAEEIQ 69 EKL+ AAIDLI+E+GYNGVTTQEIA AGLSEKTLFRHFGSK+ LLESA +RF Y E + Sbjct: 15 EKLMIAAIDLIAERGYNGVTTQEIATMAGLSEKTLFRHFGSKRNLLESAFDRFHYTEGLT 74 Query: 70 ILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHPRQLLTL 129 LF+EKL W L DLL IS+ YHE+MNR+RK+I I++KDE H+PGF+E +HP+QL+ L Sbjct: 75 KLFAEKLTWNLREDLLLISRTYHEMMNRNRKMILISIKDEAHLPGFRERTQKHPQQLMVL 134 Query: 130 LTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQENVKIF 189 T+YF +M +KGK+ +NP QA FM+ +GAF+NDL+ +N+ G+SLD FI+E+V++F Sbjct: 135 FTDYFKEMGKKGKMIQTNPEAQATAFMVMNFGAFLNDLDGTSNFSGVSLDAFIEESVEVF 194 Query: 190 VRSLT 194 R LT Sbjct: 195 ARGLT 199 >Q9KBG3.1 Q9KBG3_BACHD Transcriptional regulator (TetR/AcrR family) Length = 196 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/189 (57%), Positives = 144/189 (76%), Gaps = 1/189 (0%) Query: 7 GSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQYAE 66 G++EKL+ AAIDLISE+GYNGVTT EIAAAAG SEKTLFRHFGSKQ LLE A +RF Y E Sbjct: 7 GTSEKLMIAAIDLISERGYNGVTTLEIAAAAGFSEKTLFRHFGSKQNLLEQAFDRFHYGE 66 Query: 67 EIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHPRQL 126 E++ LF EKLVW+L DLL IS+ YH IMNR+RK+IQIA+K+ ++PGF+E +HP+QL Sbjct: 67 EMKGLFKEKLVWDLHEDLLMISQTYHTIMNRNRKMIQIAIKEGKNLPGFRERTHRHPQQL 126 Query: 127 LTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAG-NNYPGISLDQFIQEN 185 LT YF++M +K K+ +P A +FM+ +GAFIN+L++ + +SL++FI + Sbjct: 127 KEFLTTYFSEMIKKRKMIDVHPEHTAVSFMLLNFGAFINELDSDKKRFTNVSLEEFITNS 186 Query: 186 VKIFVRSLT 194 V++F R LT Sbjct: 187 VRVFTRGLT 195 >B1DD37.1 B1DD37_9BACL Transcriptional regulator, TetR family Length = 192 Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 121/184 (65%), Gaps = 1/184 (0%) Query: 11 KLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQYAEEIQI 70 KL+ AAIDL++EKGY GV+T+EIA AG+SE TLFR+F +K LL+ A+E F Y+ E+ Sbjct: 9 KLMQAAIDLMAEKGYKGVSTKEIATVAGVSEMTLFRNFANKLNLLDKAVEHFHYSIEMNR 68 Query: 71 LFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHPRQLLTLL 130 +F E++VW++ +DLL +S+ YHE+M R+RKL I L D + ++ +HPR LL LL Sbjct: 69 IFQEEVVWDIRADLLLVSEMYHELMERNRKLFLIVLADN-DLADIRQKAQKHPRILLELL 127 Query: 131 TEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQENVKIFV 190 YF +M + K+ ++ QA TFM YGAFI+ L ++ + F + +V +FV Sbjct: 128 MNYFTEMQRQHKMIDTDAETQAITFMWMNYGAFISRLYTAEAVTKVTREMFAESSVDLFV 187 Query: 191 RSLT 194 R+L+ Sbjct: 188 RALS 191 >C2W331.1 C2W331_BACCE Transcription regulator, TetR/AcrR Length = 193 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 113/189 (59%) Query: 5 KQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQY 64 + +A+K++ AAI+L+ EKGY TT+EIA AG++E T+FR+F +K+ ++E+A+ F Y Sbjct: 3 RSKTADKIIQAAIELVKEKGYKAATTKEIAIRAGVNEVTIFRNFKNKKGVIEAAVYEFSY 62 Query: 65 AEEIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHPR 124 +Q ++VWELE+DL ++++ YH+ +N + +I I +++ P E + P+ Sbjct: 63 VPHLQRFLQTEIVWELETDLKNLARHYHKFLNEAKDIISIGIRETGLFPELDEEIAKIPK 122 Query: 125 QLLTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQE 184 L L YF +M KGK+ +N Q F+ +G F++ L N I+ + FI+ Sbjct: 123 GLKEELMSYFAQMQRKGKIIDTNIEAQVMNFIWINFGYFLSKLRFENRLMEINDEDFIEN 182 Query: 185 NVKIFVRSL 193 N+ ++ R+L Sbjct: 183 NITLYTRAL 191 >C2PQ49.1 C2PQ49_BACCE Transcription regulator, TetR/AcrR Length = 193 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 112/190 (58%) Query: 4 TKQGSAEKLLHAAIDLISEKGYNGVTTQEIAAAAGLSEKTLFRHFGSKQKLLESALERFQ 63 + +AEK++ AAI+L+ EKGY TT+EIA AG++E T+FR+F SK+ ++E+A+ F Sbjct: 2 ARSKTAEKIIQAAIELVKEKGYTAATTKEIAMRAGVNEVTIFRNFKSKKGVIEAAVAEFS 61 Query: 64 YAEEIQILFSEKLVWELESDLLSISKKYHEIMNRDRKLIQIALKDEVHIPGFKESRLQHP 123 Y ++ ++VWELE+DL ++++ YH +N + +I I +++ P E + P Sbjct: 62 YVPHLKQFLQTEIVWELETDLKNLARHYHRFLNSIKDIIFIGIREAREFPELDEEISKIP 121 Query: 124 RQLLTLLTEYFNKMNEKGKVASSNPTMQAFTFMMAQYGAFINDLEAGNNYPGISLDQFIQ 183 + L L YF KM E+ K+ +N Q F+ +G F++ L N I ++FI+ Sbjct: 122 QGLKEELIIYFAKMQEQDKIIHTNIEAQVMNFIWINFGYFLSKLRFENRLMEIDDEKFIE 181 Query: 184 ENVKIFVRSL 193 N+ ++ R+L Sbjct: 182 NNIVLYARAL 191 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,129,927,499 Number of extensions: 42215935 Number of successful extensions: 143195 Number of sequences better than 1.0e-05: 158 Number of HSP's gapped: 143495 Number of HSP's successfully gapped: 158 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)