BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0022.p (354 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJR9.1 B1DJR9_9BACL Oxidoreductase domain protein 474 e-132 B3KCS8.1 B3KCS8_9BACI Oxidoreductase domain protein 469 e-130 C1PU76.1 C1PU76_ALIAC Predicted dehydrogenase 320 1e-85 Q2CKA9.1 Q2CKA9_9RHOB Putative exported oxidoreductase protein 301 7e-80 B9K0Y0.1 B9K0Y0_AGRVS Putative uncharacterized protein 298 4e-79 >B1DJR9.1 B1DJR9_9BACL Oxidoreductase domain protein Length = 350 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 226/348 (64%), Positives = 269/348 (77%), Gaps = 4/348 (1%) Query: 1 MTAQYRVAVAGCGGMANEWISYAVRRPDVRIVALVDIRLDAAAAMAGKHGLTCPVFTDIG 60 M+A Y+V VAGCGGM+N WI A+ R D IVALVDI+ + A M K GL+CP FTD+ Sbjct: 1 MSATYKVVVAGCGGMSNIWIDTAIERKDTEIVALVDIKQEFAEKMKEKKGLSCPTFTDLA 60 Query: 61 EAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGKS 120 EAI+QTGANLVFDVTIPASH+R+ASTA+ C++F EKPLAET E C ++ +AE TGKS Sbjct: 61 EAIQQTGANLVFDVTIPASHHRIASTAMQLGCNIFGEKPLAETAEECKDLIRIAEETGKS 120 Query: 121 HAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIHT 180 HAVMQNRR+DPRIR+LR L+++G IG+ G++ A FFL PHFGGFR+ M SPLLLDMAIHT Sbjct: 121 HAVMQNRRFDPRIRALRHLLDSGTIGKPGFVNADFFLGPHFGGFRETMASPLLLDMAIHT 180 Query: 181 FDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTSW 240 FDQAR I GADPV+VYC EFNPPGSWY G A+AVCIFEMSDGSVF Y+GSWCAEGA T W Sbjct: 181 FDQARLILGADPVSVYCHEFNPPGSWYEGAAAAVCIFEMSDGSVFNYRGSWCAEGANTFW 240 Query: 241 EATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHDRVEGEA----ADLKETFHYG 296 EA WRI G+KGTAIW+G PYAE V +G+FI+ R + + A + T H G Sbjct: 241 EADWRITGEKGTAIWNGHDAPYAELVAPEPQEGKFIKSFVRADADTKVYNAHSERTGHPG 300 Query: 297 CLEEMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELAGFM 344 CL+EMF +L E R AETD RDN+YSMAMV ALESARTG+KV +A F+ Sbjct: 301 CLDEMFLSLEENRRAETDSRDNQYSMAMVNAALESARTGQKVTIADFI 348 >B3KCS8.1 B3KCS8_9BACI Oxidoreductase domain protein Length = 349 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 219/345 (63%), Positives = 263/345 (76%) Query: 1 MTAQYRVAVAGCGGMANEWISYAVRRPDVRIVALVDIRLDAAAAMAGKHGLTCPVFTDIG 60 MT ++V +AGCG MAN W YA R DV IV LVDI+ A A A +HGL+CP + +I Sbjct: 1 MTTAFKVVIAGCGSMANTWADYAKGREDVEIVGLVDIQETFAKAFADRHGLSCPTYDNIN 60 Query: 61 EAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGKS 120 +A+ +GAN+VFDVTIPASHY +++ AL H C VFSEKPLAE+M C IV LAE G++ Sbjct: 61 DALASSGANIVFDVTIPASHYGISTAALKHGCHVFSEKPLAESMTECLDIVKLAESAGRT 120 Query: 121 HAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIHT 180 HAVMQNRR+DPRIR+ + LI++G IG+ G+IGA FFL HFGGFRD M+SPLLLDMAIHT Sbjct: 121 HAVMQNRRFDPRIRAFKALIDSGAIGKPGFIGADFFLGAHFGGFRDLMDSPLLLDMAIHT 180 Query: 181 FDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTSW 240 FDQAR ISGADPV+VYCQEFNPPGSWYAGNA A+CI+EMSDGSVF Y+GSWCAEGA TSW Sbjct: 181 FDQARMISGADPVSVYCQEFNPPGSWYAGNAMAICIYEMSDGSVFNYRGSWCAEGAQTSW 240 Query: 241 EATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHDRVEGEAADLKETFHYGCLEE 300 EA WR+ G++GTAIWDG YAE V + G FIR ++R+EG + +T H+GCLE Sbjct: 241 EAAWRVTGERGTAIWDGHDEIYAEVVAEGDQSGSFIRKYERIEGTLPAMAKTGHHGCLEN 300 Query: 301 MFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELAGFMT 345 MF AL ETDC DN YSMAMV ALESA+TGRK+ ++ FM Sbjct: 301 MFHALEAGIKPETDCSDNVYSMAMVLAALESAKTGRKIMISEFMN 345 >C1PU76.1 C1PU76_ALIAC Predicted dehydrogenase Length = 349 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 164/342 (47%), Positives = 209/342 (61%), Gaps = 3/342 (0%) Query: 1 MTAQYRVAVAGCGGMANEWISYAVRRPDVRIVALVDIRLDAAAAMAGKHGLTCPVFTDIG 60 M ++RVA+ GCG MAN W+ R PDV I AL D+ LD A MA ++GL +F + Sbjct: 1 MERRFRVAIVGCGQMANTWVDLLKREPDVHIEALADVDLDRARDMAARYGLEAAIFASVE 60 Query: 61 EAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGKS 120 +++ NLV D IP + + + AL CDV +EKP A T AI+ R+G+ Sbjct: 61 ALLDEARPNLVVDTAIPEARRAIVTAALERGCDVIAEKPFAPTRADAEAILDAVARSGRR 120 Query: 121 HAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIHT 180 + VMQNRRY+P +R++RR IE G IGR+ I A FF+ HFGGFR+ ME PLLLDMAIHT Sbjct: 121 YIVMQNRRYEPHLRAIRRAIEGGLIGRVEQIHADFFIGAHFGGFRERMEHPLLLDMAIHT 180 Query: 181 FDQARF-ISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTS 239 FDQARF + GA T C FNP SWY G ASA+C FEM G+VF Y+GSW AEG TS Sbjct: 181 FDQARFLLGGAKAETALCMAFNPASSWYDGCASAICAFEMEGGAVFSYRGSWSAEGFRTS 240 Query: 240 WEATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHDRVEGEAADLKETFHYGCLE 299 WE+TWRI G +GT WDG P AE V + + F+R + RV + + E H CL Sbjct: 241 WESTWRIVGSRGTIAWDGSAKPEAEVVVEGAEG--FLRPYRRVLIDVEPMPEVGHAACLR 298 Query: 300 EMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELA 341 EM AL +PAET+ DN S M++ A+ESA V +A Sbjct: 299 EMLAALRTGQPAETESSDNVESARMMYAAIESAAIRAAVHVA 340 >Q2CKA9.1 Q2CKA9_9RHOB Putative exported oxidoreductase protein Length = 345 Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 153/342 (44%), Positives = 211/342 (61%), Gaps = 9/342 (2%) Query: 6 RVAVAGCGGMANEWISYAVRRPD-----VRIVALVDIRLDAAAAMAGKHGLT-CPVFTDI 59 R + GCG M+N W++ A+R D + +V VD+ D AA A +HG T +D+ Sbjct: 3 RAVMVGCGQMSNGWLT-AIRETDALARDIELVGFVDLDPDLAAERAAQHGFTSAKTGSDL 61 Query: 60 GEAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTGK 119 +E ++VFD+ +P + V TA H CDV SEKP+A ++E ++ALA TG+ Sbjct: 62 AAMLEALAPDVVFDIVVPQARRSVVQTAFAHGCDVLSEKPMANSLEEARELLALARETGR 121 Query: 120 SHAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAIH 179 +HA++QNRR+ IR ++ LIE+GE+G I + A FFL PHFGGFR+ M+ LLLDMAIH Sbjct: 122 THAIVQNRRHLAGIRRMKALIESGELGEITALHADFFLGPHFGGFREEMDHVLLLDMAIH 181 Query: 180 TFDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPTS 239 TFD ARF+ A+P VYCQE NP GSW++ ASA +F+ +DG+ F Y+GSWCAEGAPTS Sbjct: 182 TFDAARFLLPAEPTAVYCQETNPNGSWFSHGASANALFDCTDGATFSYRGSWCAEGAPTS 241 Query: 240 WEATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHDRVEGEAADLKETFHYGCLE 299 WE++WR+ G KG+ +WDG + E DG F E L+ T H G + Sbjct: 242 WESSWRVIGTKGSVLWDGNAL--IEGAVRDGDDGFFRPTRPAALPEETPLEATGHAGVIL 299 Query: 300 EMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELA 341 + A AE R + DN S+AM F A+ESA TGR+V ++ Sbjct: 300 DFITARAEGRAPLSVNDDNIKSLAMTFAAIESAETGRRVSIS 341 >B9K0Y0.1 B9K0Y0_AGRVS Putative uncharacterized protein Length = 346 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 153/348 (43%), Positives = 212/348 (60%), Gaps = 10/348 (2%) Query: 4 QYRVAVAGCGGMANEWISYAVRRPD----VRIVALVDIRLDAAAAMAGKHGLTCPVF-TD 58 Q++ + GCG MA W+ P + +V LVD+ + AA ++A + GL V + Sbjct: 2 QFKAVLCGCGAMAKGWLRAIADTPSLAERISVVGLVDVNISAAESLAQEFGLEGAVTGSS 61 Query: 59 IGEAIEQTGANLVFDVTIPASHYRVASTALTHQCDVFSEKPLAETMEHCNAIVALAERTG 118 + + +E+T A+LVFDV IPA+ + + STAL C V SEKP+A T++ A++ LA TG Sbjct: 62 LADVLERTAADLVFDVVIPAARFDIVSTALKAGCHVLSEKPMANTLQEAKALIKLATETG 121 Query: 119 KSHAVMQNRRYDPRIRSLRRLIEAGEIGRIGYIGAGFFLAPHFGGFRDAMESPLLLDMAI 178 + HAV+QNRR+ +R +R+ +++G IG + + FFLAPHFGGFRD ME LLLDMAI Sbjct: 122 RIHAVVQNRRFVQGVRRMRQFLDSGAIGELTAVHCDFFLAPHFGGFRDEMEHVLLLDMAI 181 Query: 179 HTFDQARFISGADPVTVYCQEFNPPGSWYAGNASAVCIFEMSDGSVFCYQGSWCAEGAPT 238 HTFD ARFI+ P+ YC E NP GSWYA ASA IFE +D VF Y+GSWCAEG T Sbjct: 182 HTFDAARFIANRQPLAAYCVERNPHGSWYAHGASANAIFEFTDDVVFTYRGSWCAEGRRT 241 Query: 239 SWEATWRIQGDKGTAIWDGEGMPYAEKVTDRSPDGEFIRDHD--RVEGEAADLKETFHYG 296 SWE+ WR+ G KG WDGE A D + +R + V + A + H Sbjct: 242 SWESAWRLVGSKGMLTWDGEEAFEASIAAD---EPSLLRGYTTVNVSDDVAPAETHGHAS 298 Query: 297 CLEEMFQALAERRPAETDCRDNRYSMAMVFGALESARTGRKVELAGFM 344 LE A+A P ET DN S+AMVF A+ESA++G++++++ + Sbjct: 299 VLESFIAAVAGGEPPETAGFDNINSLAMVFAAIESAKSGKRIDISASL 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,208,495,950 Number of extensions: 95214891 Number of successful extensions: 189116 Number of sequences better than 1.0e-05: 1388 Number of HSP's gapped: 189220 Number of HSP's successfully gapped: 1388 Length of query: 354 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 217 Effective length of database: 1,770,017,148 Effective search space: 384093721116 Effective search space used: 384093721116 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)