BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0021.p
         (113 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DJS0.1 B1DJS0_9BACL Xylose isomerase domain protein TIM barrel      206   6e-52
A0P1Q5.1 A0P1Q5_9RHOB Putative uncharacterized protein                171   2e-41
A9CGI1.1 A9CGI1_AGRT5 Putative uncharacterized protein                170   3e-41
Q92UQ8.1 Q92UQ8_RHIME Putative uncharacterized protein                169   7e-41
B9K0Y1.1 B9K0Y1_AGRVS Putative uncharacterized protein                167   2e-40

>B1DJS0.1 B1DJS0_9BACL Xylose isomerase domain protein TIM barrel
          Length = 295

 Score =  206 bits (524), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 103/112 (91%), Gaps = 1/112 (0%)

Query: 1   MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60
           MV+LIDPIPQLRKW +K+FHVHGKDATIAWDIV+EYGIHGP+P+VWHRTPGFGDTNWTD+
Sbjct: 184 MVSLIDPIPQLRKWVNKVFHVHGKDATIAWDIVKEYGIHGPKPFVWHRTPGFGDTNWTDI 243

Query: 61  ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFIPNP 112
           I+ILRQ GY     DIEGWHDPVYRDELEMTGQVHALNYLK CRGG F+PNP
Sbjct: 244 ITILRQAGY-QGTIDIEGWHDPVYRDELEMTGQVHALNYLKQCRGGQFVPNP 294


>A0P1Q5.1 A0P1Q5_9RHOB Putative uncharacterized protein
          Length = 310

 Score =  171 bits (432), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/110 (72%), Positives = 93/110 (84%), Gaps = 1/110 (0%)

Query: 1   MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60
           +V LIDP+PQ+RKW DKIFHVHGKDAT+  D++RE+GI G  P+V+ RTPGFGD+NWTD+
Sbjct: 189 LVYLIDPLPQIRKWADKIFHVHGKDATVRHDVIREHGIFGKHPFVFMRTPGFGDSNWTDI 248

Query: 61  ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFIP 110
           IS LR  GY     DIEGWHDPVYRDELEMTGQVHALN+LK CRGG+FIP
Sbjct: 249 ISELRLAGY-SGSIDIEGWHDPVYRDELEMTGQVHALNHLKTCRGGAFIP 297


>A9CGI1.1 A9CGI1_AGRT5 Putative uncharacterized protein
          Length = 300

 Score =  170 bits (431), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 1   MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60
           MV LIDP+PQ+RKW DKIFHVHGKDATI WD++RE+GI G + +V+ RTPGFGD+NWTD+
Sbjct: 189 MVYLIDPLPQIRKWADKIFHVHGKDATIRWDVIREHGIFGKEKFVFMRTPGFGDSNWTDI 248

Query: 61  ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFIPNP 112
           IS LR  G+     DIEGWHDPVYRD LEMTGQVH LNYLK CRGG F+ +P
Sbjct: 249 ISELRLAGW-SGSIDIEGWHDPVYRDALEMTGQVHGLNYLKKCRGGDFVVDP 299


>Q92UQ8.1 Q92UQ8_RHIME Putative uncharacterized protein
          Length = 300

 Score =  169 bits (428), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 1   MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60
           MV LIDP+PQ+RKW  KIFHVHGKDATI WD++RE+GI G + +V+ RTPGFGD+NWTD+
Sbjct: 189 MVYLIDPLPQIRKWAPKIFHVHGKDATIRWDVIREHGIFGKEKFVFMRTPGFGDSNWTDI 248

Query: 61  ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFIPNP 112
           IS LR  G+     DIEGWHDPVYRD LEMTGQVHALNYLK CRGG F+ +P
Sbjct: 249 ISELRLAGW-SGSIDIEGWHDPVYRDALEMTGQVHALNYLKGCRGGDFVADP 299


>B9K0Y1.1 B9K0Y1_AGRVS Putative uncharacterized protein
          Length = 312

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 90/109 (82%), Gaps = 1/109 (0%)

Query: 1   MVALIDPIPQLRKWTDKIFHVHGKDATIAWDIVREYGIHGPQPYVWHRTPGFGDTNWTDV 60
           MV LIDP+PQ+RKW  KIFHVHGKDATI WD++RE+GI G +P+V+ RTPGFGD+NWT+V
Sbjct: 191 MVYLIDPLPQIRKWASKIFHVHGKDATIRWDVIREHGIFGKEPFVFMRTPGFGDSNWTNV 250

Query: 61  ISILRQGGYXXXXXDIEGWHDPVYRDELEMTGQVHALNYLKHCRGGSFI 109
           IS LR  GY     DIEGWHDPVYRD LEMTGQVHALN+LK  RGG FI
Sbjct: 251 ISELRLAGY-SGSIDIEGWHDPVYRDALEMTGQVHALNHLKQARGGDFI 298


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.145    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 832,105,383
Number of extensions: 34125304
Number of successful extensions: 49887
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 49883
Number of HSP's successfully gapped: 24
Length of query: 113
Length of database: 3,060,696,203
Length adjustment: 80
Effective length of query: 33
Effective length of database: 2,307,015,003
Effective search space: 76131495099
Effective search space used: 76131495099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)