BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0020.p (190 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJS0.1 B1DJS0_9BACL Xylose isomerase domain protein TIM barrel 227 4e-58 Q98KE9.1 Q98KE9_RHILO Mll1509 protein 140 7e-32 A0P1Q5.1 A0P1Q5_9RHOB Putative uncharacterized protein 134 3e-30 A9CGI1.1 A9CGI1_AGRT5 Putative uncharacterized protein 130 4e-29 B9J854.1 B9J854_AGRRK Putative uncharacterized protein 129 2e-28 >B1DJS0.1 B1DJS0_9BACL Xylose isomerase domain protein TIM barrel Length = 295 Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 112/139 (80%), Positives = 124/139 (89%) Query: 5 MHDSLRIGTLVGAPDAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDF 64 M + LRIGTLVG DAVRVIPQI HGFES+SLTFWQTTG TDL ETA RVREL+ E+ F Sbjct: 1 MTNILRIGTLVGGGDAVRVIPQIAPHGFESYSLTFWQTTGDTDLVETAKRVRELSDEYGF 60 Query: 65 IISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFA 124 IIS+VGIFGNPLTG G+NAD LASWERLIDHAHLFGTD+VSGFTGRLTG+SI+ SIP++A Sbjct: 61 IISTVGIFGNPLTGAGNNADTLASWERLIDHAHLFGTDIVSGFTGRLTGESIESSIPRYA 120 Query: 125 EVFGELSKRAADKGLRIAF 143 EVFGEL KRAADKG+RIAF Sbjct: 121 EVFGELGKRAADKGVRIAF 139 >Q98KE9.1 Q98KE9_RHILO Mll1509 protein Length = 302 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGA--PDAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 +RIGT+V A D + QI+ GFES FWQT G DL A +RE + D + Sbjct: 8 DIRIGTMVRANLEDPAAYVRQILPLGFESIQPFFWQTLGGKDLPRLAGEIREAIGDADVV 67 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 +SS+G+FGNPL + LA+WE +ID+AHLFG MVSGFTGRL G+ + +S+P+F E Sbjct: 68 VSSLGVFGNPLESGEVDRGVLAAWETVIDNAHLFGASMVSGFTGRLRGKKLTDSLPRFRE 127 Query: 126 VFGELSKRAADKGLRIAF 143 V+G L+KRAADKG+RIAF Sbjct: 128 VWGPLAKRAADKGVRIAF 145 >A0P1Q5.1 A0P1Q5_9RHOB Putative uncharacterized protein Length = 310 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGAP--DAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 S+RIGT++ A +A + I +I GFESF FWQTT DLAE R E + D Sbjct: 7 SIRIGTMISASGGEAAKRIDEIADLGFESFEPFFWQTTNGQDLAELGKRCVEAIGDRDIT 66 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 IS++G+FGNPL + D L W+ ID+AH FG V+GFTGR+ G+ +++S+PK+ E Sbjct: 67 ISTLGMFGNPLEDQPLDRDTLQGWKDCIDNAHHFGATCVAGFTGRVRGKPLEDSLPKYKE 126 Query: 126 VFGELSKRAADKGLRIAF 143 V+ EL+KRAADKG+RIAF Sbjct: 127 VWSELAKRAADKGVRIAF 144 >A9CGI1.1 A9CGI1_AGRT5 Putative uncharacterized protein Length = 300 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGAP--DAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 S+RIGT+V A A I QI GFESF FWQTT DLA+ R E + D Sbjct: 7 SIRIGTMVSASKGQAAERIGQIADLGFESFEPFFWQTTNGQDLADLGKRCLEAIGDRDIT 66 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 I ++G+FGNPL T + + L W+ ID+AH FG V+GFTGRL G+ + ES+P++ E Sbjct: 67 IGTLGMFGNPLEETEIDLETLQGWKDCIDNAHHFGATCVAGFTGRLRGKPLPESLPRYKE 126 Query: 126 VFGELSKRAADKGLRIAF 143 ++ EL+KRAADKG++IAF Sbjct: 127 IWSELAKRAADKGVKIAF 144 >B9J854.1 B9J854_AGRRK Putative uncharacterized protein Length = 297 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 90/138 (65%), Gaps = 2/138 (1%) Query: 8 SLRIGTLVGA--PDAVRVIPQIVKHGFESFSLTFWQTTGATDLAETAARVRELAAEHDFI 65 ++RIGT++ A DA + I +I HGFESF FWQTT +LAE R + D Sbjct: 7 AIRIGTMIKATSEDAAKGIAKIADHGFESFEPFFWQTTNGQNLAELGKRCLDAIGSRDIT 66 Query: 66 ISSVGIFGNPLTGTGDNADALASWERLIDHAHLFGTDMVSGFTGRLTGQSIDESIPKFAE 125 IS++G+FGNPL T + L W+ ID+AH FG V+GFTGR+ + + +S+P++ + Sbjct: 67 ISTLGMFGNPLETTELDQQTLQGWKDCIDNAHHFGATCVAGFTGRIRNKPLTDSLPRYKQ 126 Query: 126 VFGELSKRAADKGLRIAF 143 V+ EL+KRAADKG++IAF Sbjct: 127 VWSELAKRAADKGIKIAF 144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,142,487,795 Number of extensions: 45184362 Number of successful extensions: 98761 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 98768 Number of HSP's successfully gapped: 19 Length of query: 190 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 62 Effective length of database: 1,854,806,283 Effective search space: 114997989546 Effective search space used: 114997989546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)