BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0017.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJN0.1 B3KJN0_9BACI Putative uncharacterized protein                189   6e-47
Q9KEZ0.1 Q9KEZ0_BACHD BH0709 protein                                  181   3e-44
B1DF57.1 B1DF57_9BACL Putative uncharacterized protein                174   3e-42
Q5WKI9.1 Q5WKI9_BACSK Putative uncharacterized protein                142   1e-32
A9KHI5.1 A9KHI5_CLOPH Putative uncharacterized protein                132   1e-29

>B3KJN0.1 B3KJN0_9BACI Putative uncharacterized protein
          Length = 243

 Score =  189 bits (480), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 101/128 (78%), Gaps = 3/128 (2%)

Query: 1   VQYKVEICQSSSPLTKGIEDFDVTSEQYYLHIDPAVEVLATTRFPVIQGPHATNKAVDMP 60
           V+Y+VEI  SSSPL +G++DF V SEQYYLH+DPAVEVLATTRFPV  GPH  NKAVDMP
Sbjct: 116 VEYRVEIKSSSSPLVEGLQDFTVASEQYYLHVDPAVEVLATTRFPVAAGPHLLNKAVDMP 175

Query: 61  VVWTKRWGQGRVYYNSLGHHADIVELPPVKELMRRGLLWAAEGKQEAAANPKQM---AGA 117
           V WTKRWG GRVYYNSLGHHADIV++P VKE+MRRGLLWAAEGK   A +          
Sbjct: 176 VAWTKRWGYGRVYYNSLGHHADIVDMPQVKEMMRRGLLWAAEGKSLYAGSDMSFFTEGQG 235

Query: 118 YSGMADSQ 125
           Y+GM DSQ
Sbjct: 236 YTGMGDSQ 243


>Q9KEZ0.1 Q9KEZ0_BACHD BH0709 protein
          Length = 242

 Score =  181 bits (458), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 99/125 (79%)

Query: 1   VQYKVEICQSSSPLTKGIEDFDVTSEQYYLHIDPAVEVLATTRFPVIQGPHATNKAVDMP 60
           V Y V+I  SSS L +GIEDF+V SEQYYLH+DPAVEVLATTRFP+I+GPH+TNKAVDMP
Sbjct: 118 VDYTVQIKHSSSSLLEGIEDFNVCSEQYYLHVDPAVEVLATTRFPIIEGPHSTNKAVDMP 177

Query: 61  VVWTKRWGQGRVYYNSLGHHADIVELPPVKELMRRGLLWAAEGKQEAAANPKQMAGAYSG 120
           VVWTKRWG GRV+Y SLGH A+IV +P V  +MRRG LWAAEGK+  +    +    Y+G
Sbjct: 178 VVWTKRWGLGRVFYCSLGHQANIVAMPEVTTIMRRGFLWAAEGKERYSRLYTEKKETYTG 237

Query: 121 MADSQ 125
           M DSQ
Sbjct: 238 MGDSQ 242


>B1DF57.1 B1DF57_9BACL Putative uncharacterized protein
          Length = 233

 Score =  174 bits (440), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 90/105 (85%)

Query: 3   YKVEICQSSSPLTKGIEDFDVTSEQYYLHIDPAVEVLATTRFPVIQGPHATNKAVDMPVV 62
           Y V I  SSSPLT+GIEDF+V+SEQYYLH+DPAVEVLATTRFPV +GPH+ NKAVDMPV 
Sbjct: 118 YVVNIKHSSSPLTEGIEDFEVSSEQYYLHVDPAVEVLATTRFPVTEGPHSLNKAVDMPVA 177

Query: 63  WTKRWGQGRVYYNSLGHHADIVELPPVKELMRRGLLWAAEGKQEA 107
           WTKRWG GRVYYNSLGH A+I+++P VKE+MRRG  W AEGK  A
Sbjct: 178 WTKRWGVGRVYYNSLGHQANIIDIPVVKEMMRRGFNWCAEGKTAA 222


>Q5WKI9.1 Q5WKI9_BACSK Putative uncharacterized protein
          Length = 216

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 79/101 (78%)

Query: 1   VQYKVEICQSSSPLTKGIEDFDVTSEQYYLHIDPAVEVLATTRFPVIQGPHATNKAVDMP 60
           V+Y V+I   + PLT G+ DF+V SEQYY+H+DPAV V ATT FP+  GPHA N +V+MP
Sbjct: 115 VRYTVQIKDRNHPLTNGMADFEVESEQYYMHVDPAVSVHATTTFPIADGPHAVNGSVEMP 174

Query: 61  VVWTKRWGQGRVYYNSLGHHADIVELPPVKELMRRGLLWAA 101
           VVWTK+WG+G VYY SLGH A IV +P V ELMR+G++WAA
Sbjct: 175 VVWTKKWGKGNVYYCSLGHVAKIVRMPEVMELMRKGMVWAA 215


>A9KHI5.1 A9KHI5_CLOPH Putative uncharacterized protein
          Length = 216

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 1   VQYKVEICQSSSPLTKGIEDFDVTSEQYYLHIDPAVEVLATTRFPVIQGPHATNKAVDMP 60
           V+Y V +  +    TKG+ DF V SEQYY+HIDPA+++ ATT FPV+ GPHA+N  V++P
Sbjct: 116 VEYMVHV-SNDDYFTKGLSDFKVCSEQYYIHIDPAIKIYATTTFPVVDGPHASNGNVEIP 174

Query: 61  VVWTKRWGQGRVYYNSLGHHADIVELPPVKELMRRGLLWA 100
           VV+TK WG+G+V+Y SLGHHADI ++P   E+MRRG L+A
Sbjct: 175 VVYTKMWGEGKVFYTSLGHHADIFDIPEAYEIMRRGFLYA 214


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 779,185,290
Number of extensions: 29050939
Number of successful extensions: 55501
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 55464
Number of HSP's successfully gapped: 64
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)