BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0016.p
         (116 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJN0.1 B3KJN0_9BACI Putative uncharacterized protein                154   3e-36
B1DF57.1 B1DF57_9BACL Putative uncharacterized protein                139   7e-32
Q9KEZ0.1 Q9KEZ0_BACHD BH0709 protein                                  138   2e-31
Q2CCM6.1 Q2CCM6_9RHOB Putative uncharacterized protein                118   1e-25
A9KHI5.1 A9KHI5_CLOPH Putative uncharacterized protein                115   1e-24

>B3KJN0.1 B3KJN0_9BACI Putative uncharacterized protein
          Length = 243

 Score =  154 bits (388), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%)

Query: 1  MKKALIVWGGWDGHEPEQVAGVFAGLLREAQFDVEVANTLEAFADGEKLLGLDLIVPVWT 60
          MKKALIVWGGWDGHEPEQVAG+FA LLR  Q++VEV++TL+AF D EKL  LDLIVPVWT
Sbjct: 1  MKKALIVWGGWDGHEPEQVAGIFAELLRSEQYEVEVSDTLDAFNDAEKLQALDLIVPVWT 60

Query: 61 MGEISQELVNNVSAAVQNGTGLAGCHGGMCDS 92
          MGEIS++ V NVS AVQ GTGLAGCHGGMCDS
Sbjct: 61 MGEISKQQVENVSLAVQKGTGLAGCHGGMCDS 92


>B1DF57.1 B1DF57_9BACL Putative uncharacterized protein
          Length = 233

 Score =  139 bits (351), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 79/92 (85%)

Query: 1  MKKALIVWGGWDGHEPEQVAGVFAGLLREAQFDVEVANTLEAFADGEKLLGLDLIVPVWT 60
          M+KALIVWGGWDGH+P++VAG+F  +L +  F+VEV++TL+AFADGEKL GLDLIVP+WT
Sbjct: 1  MRKALIVWGGWDGHQPKEVAGIFQDVLAKEGFEVEVSDTLDAFADGEKLKGLDLIVPIWT 60

Query: 61 MGEISQELVNNVSAAVQNGTGLAGCHGGMCDS 92
          M +I  E V NVS AVQ+G GLAGCHGGMCD+
Sbjct: 61 MDKIKPEYVQNVSEAVQSGVGLAGCHGGMCDA 92


>Q9KEZ0.1 Q9KEZ0_BACHD BH0709 protein
          Length = 242

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 75/91 (82%)

Query: 2  KKALIVWGGWDGHEPEQVAGVFAGLLREAQFDVEVANTLEAFADGEKLLGLDLIVPVWTM 61
          KKALIVWGGWDGHEPEQVA +F   L E QF VEV+NTLE++AD EKL  LDLIVP WTM
Sbjct: 4  KKALIVWGGWDGHEPEQVAHIFKQTLEEEQFQVEVSNTLESYADAEKLKSLDLIVPHWTM 63

Query: 62 GEISQELVNNVSAAVQNGTGLAGCHGGMCDS 92
          G I +E V+++S A+Q+G G+AGCHGGMCD+
Sbjct: 64 GTIPKEYVHHISEAIQSGVGVAGCHGGMCDA 94


>Q2CCM6.1 Q2CCM6_9RHOB Putative uncharacterized protein
          Length = 240

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query: 2  KKALIVWGGWDGHEPEQVAGVFAGLLREAQFDVEVANTLEAFADGEKLLGLDLIVPVWTM 61
           KALI WGGW+GH+P++VA +F  +L    ++VEV +TL+ F D + L  LDLIVPVWTM
Sbjct: 3  SKALITWGGWEGHQPDKVAALFREMLEPEGYEVEVTDTLDCFDDADALRALDLIVPVWTM 62

Query: 62 GEISQELVNNVSAAVQNGTGLAGCHGGMCDS 92
           E+++E   NVS AV  GTGLAGCHGGMCD+
Sbjct: 63 SELTRERAENVSEAVSRGTGLAGCHGGMCDA 93


>A9KHI5.1 A9KHI5_CLOPH Putative uncharacterized protein
          Length = 216

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 66/92 (71%)

Query: 1  MKKALIVWGGWDGHEPEQVAGVFAGLLREAQFDVEVANTLEAFADGEKLLGLDLIVPVWT 60
          MKK L+V GGWDGHEP  V+ VF  +L +    VEV +TLE  +D EKL   DLIVP+WT
Sbjct: 1  MKKVLMVQGGWDGHEPVLVSQVFQKMLEKEGSSVEVHDTLECLSDAEKLKSYDLIVPIWT 60

Query: 61 MGEISQELVNNVSAAVQNGTGLAGCHGGMCDS 92
          MG I    V+NVS AV +GTGLAGCHGGMCD+
Sbjct: 61 MGTIPSNYVHNVSVAVASGTGLAGCHGGMCDA 92


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 714,382,535
Number of extensions: 25810804
Number of successful extensions: 59625
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 59600
Number of HSP's successfully gapped: 52
Length of query: 116
Length of database: 3,060,696,203
Length adjustment: 83
Effective length of query: 33
Effective length of database: 2,278,751,958
Effective search space: 75198814614
Effective search space used: 75198814614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)