BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0502.0014.p
         (75 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJN2.1 B3KJN2_9BACI Ribose operon repressor                          79   2e-13
C0V0N2.1 C0V0N2_9BACT Transcriptional regulator, LacI family           55   3e-06

>B3KJN2.1 B3KJN2_9BACI Ribose operon repressor
          Length = 228

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 52/73 (71%), Gaps = 3/73 (4%)

Query: 1   MPAIVGYDDSDAAELTTPALSSVRVPFYQLGEIAAAKVLE-LPESGSRD--TEQETIHVK 57
           MPA VGYDDS+AAEL TP L+SVRVPFY+LG +AA  VL  L +S S D       +H +
Sbjct: 153 MPAFVGYDDSEAAELCTPPLTSVRVPFYELGCLAAEHVLRLLDDSDSPDGSGSNAALHRQ 212

Query: 58  LPAKLIVRASSLR 70
           LP +L+VRASSL 
Sbjct: 213 LPTRLVVRASSLH 225


>C0V0N2.1 C0V0N2_9BACT Transcriptional regulator, LacI family
          Length = 334

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 3   AIVGYDDSDAAELTTPALSSVRVPFYQLGEIAAAKVLELPESGSRDTEQETIHVKLPAKL 62
           ++VG+DD + A   +P L++VRVP  ++G +A  ++L L ESG  D  ++ +   LP ++
Sbjct: 266 SVVGFDDIELARTVSPPLTTVRVPCEEMGRVALERLLALIESG--DWREDNMRWTLPTRV 323

Query: 63  IVRASSLRLG 72
           I R+S  RLG
Sbjct: 324 IPRSSVRRLG 333


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 402,121,064
Number of extensions: 12221087
Number of successful extensions: 27213
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 27484
Number of HSP's successfully gapped: 2
Length of query: 75
Length of database: 3,060,696,203
Length adjustment: 46
Effective length of query: 29
Effective length of database: 2,627,329,513
Effective search space: 76192555877
Effective search space used: 76192555877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)