BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0012.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K603.1 B3K603_9BACI LysR substrate-binding 388 e-106 B5V2A0.1 B5V2A0_BACCE Transcriptional regulator, LysR 341 5e-92 Q6HGS5.1 Q6HGS5_BACHK Transcriptional regulators, LysR family 340 7e-92 C3GUG2.1 C3GUG2_BACTU Transcriptional regulator, LysR 339 1e-91 C2NRQ8.1 C2NRQ8_BACCE Transcriptional regulator, LysR 339 1e-91 >B3K603.1 B3K603_9BACI LysR substrate-binding Length = 289 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/288 (63%), Positives = 233/288 (80%) Query: 5 LSISKYEVFLKVVELGSLTRAAEVLGFTQSGISHTISSLESEFGFTLLLRNRSGVRLTVN 64 +S++K++V +KVVELGSLT+AAEV+GFTQSG+SH I+SLE EFGF+LL+RNRSG +LT N Sbjct: 1 MSMNKFKVLVKVVELGSLTKAAEVMGFTQSGVSHMINSLEDEFGFSLLIRNRSGAKLTTN 60 Query: 65 GEQVVQPIREIMKWNEQLKQQVADIHGLETGTITIGTFTSVSVHWLPGMIKQFREEYPYI 124 GE++V+ +REI+KWNE L+QQVA IHG+E GTI IGTFTSV VHWLPG+I+ F+ +YP+I Sbjct: 61 GEEIVKTMREILKWNEHLEQQVASIHGIELGTIHIGTFTSVGVHWLPGIIQDFQRDYPHI 120 Query: 125 EFKLMEGGYLEIEQWIEAGVVDFGFISLPTRENFEVFPLKQDRMLAILSKEHPLSKAPYM 184 E +L+EG Y EIE WI G +D GF+SLPT + F+ PL QD ML +L EHPLS + Sbjct: 121 EIRLVEGDYREIEDWIAEGKIDCGFLSLPTWDIFDAIPLHQDPMLVLLPVEHPLSSEDSI 180 Query: 185 PLAQIAHEDFIIPKAGSDYDVRRVLEKAAIKPNIKFSAGDDYAIIAMVENGLGISILPEL 244 LAQI +E FI+P GSDYDV RVLEKA KP+IK++ GDDYAI+AMVE GLGISILPEL Sbjct: 181 ALAQIENEPFIMPSKGSDYDVNRVLEKALTKPDIKYTLGDDYAIMAMVEKGLGISILPEL 240 Query: 245 VIQRQNHNVAMLELEERSFRSLGIAVHSMRHASPAAKRFLGHVQSWFK 292 V++ Q N+ +EL+E+SFRSLGIAV S+R SPA KRFL +V+S+ K Sbjct: 241 VLRGQRRNIRQIELKEKSFRSLGIAVSSLREVSPATKRFLDYVKSYPK 288 >B5V2A0.1 B5V2A0_BACCE Transcriptional regulator, LysR Length = 290 Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 159/287 (55%), Positives = 216/287 (75%) Query: 5 LSISKYEVFLKVVELGSLTRAAEVLGFTQSGISHTISSLESEFGFTLLLRNRSGVRLTVN 64 +S++K E+FLK VE+G+L+RAAE L TQSG+SH I SLE E+GF LLLRN++GVRLT N Sbjct: 1 MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLLRNKTGVRLTEN 60 Query: 65 GEQVVQPIREIMKWNEQLKQQVADIHGLETGTITIGTFTSVSVHWLPGMIKQFREEYPYI 124 GE+V+ +RE++ NE+LKQ VADI+G+ GT+ IGTFTSVS+HWLP +I +FR E+P I Sbjct: 61 GERVLTHVREVVNHNERLKQTVADINGIVAGTLRIGTFTSVSIHWLPTIIHRFRLEHPRI 120 Query: 125 EFKLMEGGYLEIEQWIEAGVVDFGFISLPTRENFEVFPLKQDRMLAILSKEHPLSKAPYM 184 E KLMEG Y IE WI+ GV+D GF+SLP+ + E PL++DRML IL K H LSK + Sbjct: 121 EIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRKDRMLCILPKNHSLSKQSII 180 Query: 185 PLAQIAHEDFIIPKAGSDYDVRRVLEKAAIKPNIKFSAGDDYAIIAMVENGLGISILPEL 244 Q+ E FI+P + YDVR+VLE A ++ +I+F GDD+ I+AMVENGLGIS++ EL Sbjct: 181 QYDQLEKEPFIMPASSCGYDVRKVLEAARVQLDIQFETGDDHVIVAMVENGLGISVMSEL 240 Query: 245 VIQRQNHNVAMLELEERSFRSLGIAVHSMRHASPAAKRFLGHVQSWF 291 +Q Q+ NV ++ELE++ RSLG+++ S++HA PA KRF+ + Q W Sbjct: 241 ALQGQSENVTIVELEDKPVRSLGLSLTSIKHALPATKRFIEYTQKWL 287 >Q6HGS5.1 Q6HGS5_BACHK Transcriptional regulators, LysR family Length = 290 Score = 340 bits (873), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 159/287 (55%), Positives = 215/287 (74%) Query: 5 LSISKYEVFLKVVELGSLTRAAEVLGFTQSGISHTISSLESEFGFTLLLRNRSGVRLTVN 64 +S++K E+FLK VE+G+L+RAAE L TQSG+SH I SLE E+GF LLLRN++GVRLT N Sbjct: 1 MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLLRNKTGVRLTEN 60 Query: 65 GEQVVQPIREIMKWNEQLKQQVADIHGLETGTITIGTFTSVSVHWLPGMIKQFREEYPYI 124 GE V+ +RE++ NE+LKQ VADI+G+ GT+ IGTFTSVS+HWLP +I +FR E+P I Sbjct: 61 GEHVLTHVREVVNHNERLKQTVADINGIVAGTLRIGTFTSVSIHWLPTIIHRFRLEHPRI 120 Query: 125 EFKLMEGGYLEIEQWIEAGVVDFGFISLPTRENFEVFPLKQDRMLAILSKEHPLSKAPYM 184 E KLMEG Y IE WI+ GV+D GF+SLP+ + E PL++DRML IL K H LSK + Sbjct: 121 EIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRKDRMLCILPKNHSLSKQSII 180 Query: 185 PLAQIAHEDFIIPKAGSDYDVRRVLEKAAIKPNIKFSAGDDYAIIAMVENGLGISILPEL 244 Q+ E FI+P + YDVR+VLE A ++ +I+F GDD+ I+AMVENGLGIS++ EL Sbjct: 181 QYDQLEKEPFIMPASSCGYDVRKVLEAARVQLDIQFETGDDHVIVAMVENGLGISVMSEL 240 Query: 245 VIQRQNHNVAMLELEERSFRSLGIAVHSMRHASPAAKRFLGHVQSWF 291 +Q Q+ NV ++ELE++ RSLG+++ S++HA PA KRF+ + Q W Sbjct: 241 ALQGQSENVTIVELEDKPVRSLGLSLTSIKHALPATKRFIEYTQKWL 287 >C3GUG2.1 C3GUG2_BACTU Transcriptional regulator, LysR Length = 290 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 159/287 (55%), Positives = 211/287 (73%) Query: 5 LSISKYEVFLKVVELGSLTRAAEVLGFTQSGISHTISSLESEFGFTLLLRNRSGVRLTVN 64 +S++K E+FLK VE+G+L+RAAE L TQSG+SH I SLE E+GF LL RN++GVRLT N Sbjct: 1 MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLFRNKTGVRLTEN 60 Query: 65 GEQVVQPIREIMKWNEQLKQQVADIHGLETGTITIGTFTSVSVHWLPGMIKQFREEYPYI 124 GE+V+ +REI+ NE+LKQ VA+I+G+ GT+ IGTFTSVS HWLP +I +F EYP I Sbjct: 61 GERVLTHVREIVNHNERLKQTVAEINGIVAGTLRIGTFTSVSTHWLPAIIHRFHLEYPRI 120 Query: 125 EFKLMEGGYLEIEQWIEAGVVDFGFISLPTRENFEVFPLKQDRMLAILSKEHPLSKAPYM 184 E KLMEG Y IE WI+ GV+D GF+SLP+ + E PL++DRML +L K H LSK + Sbjct: 121 EIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRKDRMLCVLPKNHSLSKQSII 180 Query: 185 PLAQIAHEDFIIPKAGSDYDVRRVLEKAAIKPNIKFSAGDDYAIIAMVENGLGISILPEL 244 Q+ E FI+P + YDVR+VLE A + NI+F GDD+ I+AMVENGLGIS++ EL Sbjct: 181 QYNQLEKEPFIMPASSCGYDVRKVLEAARVHLNIQFETGDDHVIVAMVENGLGISVMSEL 240 Query: 245 VIQRQNHNVAMLELEERSFRSLGIAVHSMRHASPAAKRFLGHVQSWF 291 +Q Q NV ++ELE++ RSLG+++ S++HA PA KRF+ H Q W Sbjct: 241 ALQGQCENVTVVELEDKPIRSLGLSLTSIKHALPATKRFIEHTQKWL 287 >C2NRQ8.1 C2NRQ8_BACCE Transcriptional regulator, LysR Length = 290 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 159/287 (55%), Positives = 211/287 (73%) Query: 5 LSISKYEVFLKVVELGSLTRAAEVLGFTQSGISHTISSLESEFGFTLLLRNRSGVRLTVN 64 +S++K E+FLK VE+G+L+RAAE L TQSG+SH I SLE E+GF LL RN++GVRLT N Sbjct: 1 MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLFRNKTGVRLTEN 60 Query: 65 GEQVVQPIREIMKWNEQLKQQVADIHGLETGTITIGTFTSVSVHWLPGMIKQFREEYPYI 124 GE+V+ +REI+ NE+LKQ VA+I+G+ GT+ IGTFTSVS HWLP +I +F EYP I Sbjct: 61 GERVLTHVREIVNHNERLKQTVAEINGIVAGTLRIGTFTSVSTHWLPAIIHRFHLEYPRI 120 Query: 125 EFKLMEGGYLEIEQWIEAGVVDFGFISLPTRENFEVFPLKQDRMLAILSKEHPLSKAPYM 184 E KLMEG Y IE WI+ GV+D GF+SLP+ + E PL++DRML +L K H LSK + Sbjct: 121 EIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRKDRMLCVLPKNHSLSKQSII 180 Query: 185 PLAQIAHEDFIIPKAGSDYDVRRVLEKAAIKPNIKFSAGDDYAIIAMVENGLGISILPEL 244 Q+ E FI+P + YDVR+VLE A + NI+F GDD+ I+AMVENGLGIS++ EL Sbjct: 181 QYNQLEKEPFIMPASSCGYDVRKVLEAARVHLNIQFETGDDHVIVAMVENGLGISVMSEL 240 Query: 245 VIQRQNHNVAMLELEERSFRSLGIAVHSMRHASPAAKRFLGHVQSWF 291 +Q Q NV ++ELE++ RSLG+++ S++HA PA KRF+ H Q W Sbjct: 241 ALQGQCENVTVVELEDKPIRSLGLSLTSIKHALPATKRFIEHTQKWL 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,671,045,807 Number of extensions: 66874814 Number of successful extensions: 199699 Number of sequences better than 1.0e-05: 15402 Number of HSP's gapped: 190013 Number of HSP's successfully gapped: 15403 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)