BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0011.p (306 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K604.1 B3K604_9BACI Putative uncharacterized protein 291 6e-77 Q6HGS4.1 Q6HGS4_BACHK Permease, drug/metabolite exporter family 290 1e-76 B5V2A1.1 B5V2A1_BACCE Permease, drug/metabolite exporter family 290 1e-76 B7HAI6.1 B7HAI6_BACC4 Transporter, Drug/Metabolite Exporter family 289 2e-76 Q813E7.1 Q813E7_BACCR Transporter, Drug/Metabolite Exporter family 288 4e-76 >B3K604.1 B3K604_9BACI Putative uncharacterized protein Length = 304 Score = 291 bits (744), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 144/268 (53%), Positives = 189/268 (70%) Query: 8 MKPLKAELMLFVVTMFWGSSYLFMKMGLGSLGEFNLIALRFGLAFILAAVLFHKRLRTVD 67 MKPLKA+LM+ +TM WGSSYLFMKMGL SLG FNLIALRFGLAF+LA +F RLR V+ Sbjct: 1 MKPLKADLMILFITMCWGSSYLFMKMGLDSLGAFNLIALRFGLAFMLAGAIFFPRLRRVN 60 Query: 68 ARTVKYXXXXXXXXXXVFTCITFGLKTTTTSNAGFLVALTVVFVPMLEVLVFKKRVAPPQ 127 +T++Y +FT +TFGLKTTT SNAGFL++LTVVFVP++ +F K++ Sbjct: 61 LKTIRYAMLLGFILFIMFTALTFGLKTTTASNAGFLISLTVVFVPLIHTFLFMKKIEMKL 120 Query: 128 LFGAILAISGIGLLTLNGSLQVRPGDLLCILSAVFYAVQILVTARAVKTGDSLNIGILQL 187 + +LA++GI LLT+ + GDL CI +A+ YA+ I + + A + D+L++GILQL Sbjct: 121 IVSILLALTGIALLTIQLPFAFKIGDLFCIAAALCYALHINIVSTAAQKVDALSLGILQL 180 Query: 188 GFAGGYALILSAVFETPSLPATLPGWIAVLALGIFCSACGFILQPVAQKHTSPTRTGLIF 247 GF G YA + S + ETP+ P++ W AVL L I CS GFI Q +AQK+T+ TRTGL+F Sbjct: 181 GFTGLYAFLSSLLLETPAWPSSTDSWTAVLVLSIVCSGLGFIFQTIAQKYTTATRTGLVF 240 Query: 248 ALEPVFAAFFGYWFVHEKLSLQGYTGAA 275 +LEPVFAA FGYWF +E + Y GAA Sbjct: 241 SLEPVFAALFGYWFANEVMDSNQYAGAA 268 >Q6HGS4.1 Q6HGS4_BACHK Permease, drug/metabolite exporter family Length = 298 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/279 (52%), Positives = 208/279 (74%) Query: 8 MKPLKAELMLFVVTMFWGSSYLFMKMGLGSLGEFNLIALRFGLAFILAAVLFHKRLRTVD 67 MKP+KA LM+ +VTM WG+SYLFMK+GL ++ F+L+ALRFG+AF++ A +F K+ R++ Sbjct: 1 MKPIKANLMILLVTMTWGTSYLFMKIGLETVPSFSLVALRFGIAFLVCAAVFFKQFRSIH 60 Query: 68 ARTVKYXXXXXXXXXXVFTCITFGLKTTTTSNAGFLVALTVVFVPMLEVLVFKKRVAPPQ 127 T+KY V + GLKTT+ SNAGFL +LTV+F+P+L +++FK R++ Sbjct: 61 FVTLKYGFILGFLLFVVSASVILGLKTTSASNAGFLASLTVIFIPLLSIVLFKDRLSYRL 120 Query: 128 LFGAILAISGIGLLTLNGSLQVRPGDLLCILSAVFYAVQILVTARAVKTGDSLNIGILQL 187 + +++A++GIGLLTLN L + GDLLCIL+A+FYA I+VT RA K ++L +GILQL Sbjct: 121 IISSLVAMTGIGLLTLNNQLTLNSGDLLCILAALFYAFHIIVTGRAAKVANTLQLGILQL 180 Query: 188 GFAGGYALILSAVFETPSLPATLPGWIAVLALGIFCSACGFILQPVAQKHTSPTRTGLIF 247 GFAGG+ ++ + +FE P LP+T WIAVL L IFCSA +I+Q +AQK+T+PT TGLIF Sbjct: 181 GFAGGFGVLSALIFEEPQLPSTKESWIAVLVLSIFCSAFAYIIQAMAQKYTTPTHTGLIF 240 Query: 248 ALEPVFAAFFGYWFVHEKLSLQGYTGAALVLLGIVASEL 286 +LEPVF+A F Y F++E LS+QGY GA L+L G++ +E+ Sbjct: 241 SLEPVFSALFAYLFMNELLSIQGYIGALLILSGVILAEI 279 >B5V2A1.1 B5V2A1_BACCE Permease, drug/metabolite exporter family Length = 298 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 146/279 (52%), Positives = 208/279 (74%) Query: 8 MKPLKAELMLFVVTMFWGSSYLFMKMGLGSLGEFNLIALRFGLAFILAAVLFHKRLRTVD 67 MKP+KA LM+ +VTM WG+SYLFMK+GL ++ F+L+ALRFG+AF++ A +F K+ R++ Sbjct: 1 MKPIKANLMILLVTMTWGTSYLFMKIGLETVPSFSLVALRFGIAFLVCAAVFFKQFRSIH 60 Query: 68 ARTVKYXXXXXXXXXXVFTCITFGLKTTTTSNAGFLVALTVVFVPMLEVLVFKKRVAPPQ 127 T+KY V + GLKTT+ SNAGFL +LTV+F+P+L +++FK R++ Sbjct: 61 FVTLKYGFILGFLLFVVSASVILGLKTTSASNAGFLASLTVIFIPLLSIVLFKDRLSYRL 120 Query: 128 LFGAILAISGIGLLTLNGSLQVRPGDLLCILSAVFYAVQILVTARAVKTGDSLNIGILQL 187 + +++A++GIGLLTLN L + GDLLCIL+A+FYA I+VT RA K ++L +GILQL Sbjct: 121 IISSLVAMTGIGLLTLNNQLTLNSGDLLCILAALFYAFHIIVTGRAAKVANTLQLGILQL 180 Query: 188 GFAGGYALILSAVFETPSLPATLPGWIAVLALGIFCSACGFILQPVAQKHTSPTRTGLIF 247 GFAGG+ ++ + +FE P LP+T WIAVL L IFCSA +I+Q +AQK+T+PT TGLIF Sbjct: 181 GFAGGFGVLSALIFEEPQLPSTKESWIAVLVLSIFCSAFAYIIQAMAQKYTTPTHTGLIF 240 Query: 248 ALEPVFAAFFGYWFVHEKLSLQGYTGAALVLLGIVASEL 286 +LEPVF+A F Y F++E LS+QGY GA L+L G++ +E+ Sbjct: 241 SLEPVFSALFAYLFMNELLSIQGYIGALLILSGVILAEI 279 >B7HAI6.1 B7HAI6_BACC4 Transporter, Drug/Metabolite Exporter family Length = 289 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 146/279 (52%), Positives = 208/279 (74%) Query: 8 MKPLKAELMLFVVTMFWGSSYLFMKMGLGSLGEFNLIALRFGLAFILAAVLFHKRLRTVD 67 MKP+KA LM+ +VTM WG+SYLFMK+GL ++ F+L+ALRFG+AF++ A +F K+ R++ Sbjct: 1 MKPIKANLMILLVTMTWGTSYLFMKIGLETVPSFSLVALRFGIAFLVCAAVFFKQFRSIH 60 Query: 68 ARTVKYXXXXXXXXXXVFTCITFGLKTTTTSNAGFLVALTVVFVPMLEVLVFKKRVAPPQ 127 T+KY V + GLKTT+ SNAGFL +LTV+F+P+L +++FK R++ Sbjct: 61 FVTLKYGFILGFLLFVVSASVILGLKTTSASNAGFLASLTVIFIPLLSIVLFKDRLSYRL 120 Query: 128 LFGAILAISGIGLLTLNGSLQVRPGDLLCILSAVFYAVQILVTARAVKTGDSLNIGILQL 187 + +++A++GIGLLTLN L + GDLLCIL+A+FYA I+VT RA K ++L +GILQL Sbjct: 121 IISSLVAMTGIGLLTLNNQLTLNSGDLLCILAALFYAFHIIVTGRAAKVANTLQLGILQL 180 Query: 188 GFAGGYALILSAVFETPSLPATLPGWIAVLALGIFCSACGFILQPVAQKHTSPTRTGLIF 247 GFAGG+ ++ + +FE P LP+T WIAVL L IFCSA +I+Q +AQK+T+PT TGLIF Sbjct: 181 GFAGGFGVLSALIFEEPQLPSTKESWIAVLVLSIFCSAFAYIIQAMAQKYTTPTHTGLIF 240 Query: 248 ALEPVFAAFFGYWFVHEKLSLQGYTGAALVLLGIVASEL 286 +LEPVF+A F Y F++E LSL+GY GA L+L G++ +E+ Sbjct: 241 SLEPVFSALFAYLFMNEVLSLKGYIGALLILSGVILAEI 279 >Q813E7.1 Q813E7_BACCR Transporter, Drug/Metabolite Exporter family Length = 289 Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 146/279 (52%), Positives = 207/279 (74%) Query: 8 MKPLKAELMLFVVTMFWGSSYLFMKMGLGSLGEFNLIALRFGLAFILAAVLFHKRLRTVD 67 MKP+KA LM+ +VTM WG+SYLFMK+GL ++ F+L+ALRFG+AF + A +F K+ R++ Sbjct: 1 MKPIKANLMILLVTMTWGTSYLFMKIGLETVPSFSLVALRFGIAFFVCAAVFFKQFRSIH 60 Query: 68 ARTVKYXXXXXXXXXXVFTCITFGLKTTTTSNAGFLVALTVVFVPMLEVLVFKKRVAPPQ 127 T+KY V + GLKTT+ SNAGFL +LTV+F+P+L +++FK R++ Sbjct: 61 FVTLKYGFILGFLLFVVSASVILGLKTTSASNAGFLASLTVIFIPLLSIVLFKDRLSYRL 120 Query: 128 LFGAILAISGIGLLTLNGSLQVRPGDLLCILSAVFYAVQILVTARAVKTGDSLNIGILQL 187 + +++A++GIGLLTLN L + GDLLCIL+A+FYA I+VT RA K ++L +GILQL Sbjct: 121 IISSLVAMTGIGLLTLNNQLTLNSGDLLCILAALFYAFHIIVTGRAAKVANTLQLGILQL 180 Query: 188 GFAGGYALILSAVFETPSLPATLPGWIAVLALGIFCSACGFILQPVAQKHTSPTRTGLIF 247 GFAGG+ ++ + +FE P LP+T WIAVL L IFCSA +I+Q +AQK+T+PT TGLIF Sbjct: 181 GFAGGFGVLSALIFEEPQLPSTKESWIAVLVLSIFCSAFAYIIQAMAQKYTTPTHTGLIF 240 Query: 248 ALEPVFAAFFGYWFVHEKLSLQGYTGAALVLLGIVASEL 286 +LEPVF+A F Y F++E LSL+GY GA L+L G++ +E+ Sbjct: 241 SLEPVFSALFAYLFMNEVLSLKGYIGALLILSGVILAEI 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,628,350,109 Number of extensions: 62763075 Number of successful extensions: 223749 Number of sequences better than 1.0e-05: 2073 Number of HSP's gapped: 223126 Number of HSP's successfully gapped: 2074 Length of query: 306 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 171 Effective length of database: 1,788,859,178 Effective search space: 305894919438 Effective search space used: 305894919438 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)