BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0010.p (417 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LVL7.1 A6LVL7_CLOB8 Serine dehydratase alpha chain 644 0.0 A9KQY9.1 A9KQY9_CLOPH Serine dehydratase alpha chain 498 e-139 Q30WP1.1 Q30WP1_DESDG L-serine ammonia-lyase EC=4.3.1.17 369 e-100 A7VAB7.1 A7VAB7_BACUN Putative uncharacterized protein 366 3e-99 Q64WW1.1 Q64WW1_BACFR L-serine dehydratase 357 1e-96 >A6LVL7.1 A6LVL7_CLOB8 Serine dehydratase alpha chain Length = 402 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/402 (75%), Positives = 345/402 (85%) Query: 16 MRSLTELYKIGSGPSSSHTMGPEKAARIFKAENEDADQFKALIYGSLAKTGKGHMTDKAI 75 M+SL ELYKIGSGPSSSHTMGPEKAAR+FKAENE A++FK LIYGSLAKTGKGHMTDKAI Sbjct: 1 MKSLIELYKIGSGPSSSHTMGPEKAARVFKAENEGAERFKVLIYGSLAKTGKGHMTDKAI 60 Query: 76 IRALSPASAEVEFVPQPDFVLPHPNTMDLFAYQDGQQTNSMRAVSIGGGDIVIEGREETH 135 I+ALSP E+EF+ DF+LPHPNT+D AY+DG+QT SMR VS+GGGDIVI+GREE Sbjct: 61 IKALSPVPTEIEFITHADFILPHPNTIDFLAYKDGRQTTSMRVVSVGGGDIVIDGREEML 120 Query: 136 GPDVYPENSFAEISAFCKANHIRLSDYVEQREGNQIWEFLQGIWEAMKRSIDEGLSVTGI 195 PD+Y EN+F+EIS+ CKAN+I LS+Y+EQ EG +IW+FL IW+AMK SI+EGL+ TG+ Sbjct: 121 VPDIYKENTFSEISSLCKANNISLSEYIEQCEGKKIWDFLYVIWDAMKHSINEGLTSTGV 180 Query: 196 LEGGLHVERKAKYLYHQRDMDESPETRENRIVSAYAFAVNEQNAAAGTVVTAPTCGASGV 255 LEGGL+VERKA++LY+QR +DESPETRENRIV AYAFAV+EQNAA GT+VTAPTCGASGV Sbjct: 181 LEGGLNVERKAQFLYNQRHIDESPETRENRIVCAYAFAVSEQNAAGGTIVTAPTCGASGV 240 Query: 256 VPASLRYMQEKLQVPDERILRALAVGGLIGNLVKQNASISGAQCGCQAEVXXXXXXXXXX 315 VPA LRYMQEK V DE+I+RALAVGGLIGNL+KQNASISGA+CGCQ EV Sbjct: 241 VPAVLRYMQEKKHVTDEQIIRALAVGGLIGNLIKQNASISGAKCGCQGEVGSACSMASAA 300 Query: 316 XXXXXXXXIDQIEYAAEVAMEHHLGLTCDPINGLVQIPCIERNAVGAMRAINALSLAKFL 375 IDQIEYAAEVA+EHHLGLTCDPI GLVQIPCIERNAV AMRAINA+SLA FL Sbjct: 301 LSELFGMDIDQIEYAAEVALEHHLGLTCDPICGLVQIPCIERNAVAAMRAINAMSLANFL 360 Query: 376 SGTRKISFDLVVQTMYETGQDMNSSYRETSEGGLAKLYKIDS 417 S TRKISFDLVVQTMYETG DM+S YRET++GGLAKLYKIDS Sbjct: 361 SNTRKISFDLVVQTMYETGLDMSSDYRETADGGLAKLYKIDS 402 >A9KQY9.1 A9KQY9_CLOPH Serine dehydratase alpha chain Length = 410 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 239/400 (59%), Positives = 297/400 (74%), Gaps = 1/400 (0%) Query: 16 MRSLTELYKIGSGPSSSHTMGPEKAARIFKAENEDADQFKALIYGSLAKTGKGHMTDKAI 75 M++L +LYKIG+GPSSSHTMGP KAA +FKA+ D D ++ ++Y SLAKTG+GH TD+A+ Sbjct: 1 MKTLKDLYKIGAGPSSSHTMGPAKAATLFKADFPDVDYYEIVLYDSLAKTGRGHRTDRAL 60 Query: 76 IRALSPASAEVEFVPQPDFVLPHPNTMDLFAYQDGQQTNSMRAVSIGGGDIVIEGREETH 135 +AL+P ++ F LPHPNT+D A + + SMR S+GGG I IEGR++ Sbjct: 61 RQALAPIEVKIIFDTTTKG-LPHPNTLDFRAMKQEELVGSMRVYSVGGGSIQIEGRKDAE 119 Query: 136 GPDVYPENSFAEISAFCKANHIRLSDYVEQREGNQIWEFLQGIWEAMKRSIDEGLSVTGI 195 D+YP NSF EI+ +C+ N++R+ YVE+ EG IW++L +W MK SI +GLS G Sbjct: 120 LTDIYPLNSFTEIAEYCRTNNLRIWQYVEEIEGPSIWDYLSEVWFQMKTSIHQGLSTQGE 179 Query: 196 LEGGLHVERKAKYLYHQRDMDESPETRENRIVSAYAFAVNEQNAAAGTVVTAPTCGASGV 255 L GGLH++RKA YL +QR MDES ETRENR V AYA+AV+EQNA G +VTAPTCGA+GV Sbjct: 180 LPGGLHIQRKAYYLLNQRHMDESAETRENRTVCAYAYAVSEQNADNGIIVTAPTCGAAGV 239 Query: 256 VPASLRYMQEKLQVPDERILRALAVGGLIGNLVKQNASISGAQCGCQAEVXXXXXXXXXX 315 VPA L+YMQEK D I+ ALA GG+IGNL+K NASISGA+CGCQAE+ Sbjct: 240 VPAVLKYMQEKKGFSDIDIIHALATGGIIGNLIKTNASISGAECGCQAEIGSACSMASAA 299 Query: 316 XXXXXXXXIDQIEYAAEVAMEHHLGLTCDPINGLVQIPCIERNAVGAMRAINALSLAKFL 375 I+QIEYAAEVAMEHHLGLTCDPI G+VQIPCIERNAV AMRAINALSLA FL Sbjct: 300 LAELVGMGINQIEYAAEVAMEHHLGLTCDPIKGMVQIPCIERNAVAAMRAINALSLANFL 359 Query: 376 SGTRKISFDLVVQTMYETGQDMNSSYRETSEGGLAKLYKI 415 + TRKISFD+V+ TMY+TG+DM Y+ETSEGGLAK+Y + Sbjct: 360 AETRKISFDMVIATMYQTGKDMLHHYKETSEGGLAKMYPV 399 >Q30WP1.1 Q30WP1_DESDG L-serine ammonia-lyase EC=4.3.1.17 Length = 404 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/401 (47%), Positives = 255/401 (63%), Gaps = 7/401 (1%) Query: 16 MRSLTELYKIGSGPSSSHTMGPEKAARIFKAENEDADQFKALIYGSLAKTGKGHMTDKAI 75 M S+TELY+IGSGPSSSHTMGP+ AAR+F ++ +A +F+ +Y SLA TGKGH+TD+A+ Sbjct: 1 MDSITELYRIGSGPSSSHTMGPQNAARLFVEQHPEAARFRVTLYESLASTGKGHLTDRAV 60 Query: 76 IRALSPASAEVEFVPQPDFVLP-HPNTMDLFAYQD--GQQTNSMRAVSIGGGDIVIEGRE 132 AL E+ V +P+ +P HPN M LF QD G T S + S+GGG I+ E Sbjct: 61 TAALGEERCEI--VWKPEERMPRHPNGM-LFEAQDSNGNVTGSWKVYSVGGGAIMGEDEP 117 Query: 133 ETHGPDVYPENSFAEISAFCKANHIRLSDYVEQREGNQIWEFLQGIWEAMKRSIDEGLSV 192 VYP A + A C+ I +YV + EG +W FL+ IW+AM+++++ GL+ Sbjct: 118 RRQQQGVYPHPDLASVMALCEDKGITYWEYVARYEGETVWPFLKTIWQAMQQALERGLTA 177 Query: 193 TGILEGGLHVERKAKYLYHQRDMDESPETRENRIVSAYAFAVNEQNAAAGTVVTAPTCGA 252 G+L G + + R+A + Y R + V+AYA AV E+NAA G +VTAPTCG+ Sbjct: 178 QGVLPGSIGLRRQA-WNYMSRTKLAHKSMHQTGKVTAYALAVAEENAAGGIIVTAPTCGS 236 Query: 253 SGVVPASLRYMQEKLQVPDERILRALAVGGLIGNLVKQNASISGAQCGCQAEVXXXXXXX 312 G+VPA L Y++E L+ ++ ILRALA GL GN++K NASISGA+ GCQ EV Sbjct: 237 CGIVPAVLYYLRETLKATEQDILRALATAGLFGNIIKHNASISGAEVGCQGEVGSACAMA 296 Query: 313 XXXXXXXXXXXIDQIEYAAEVAMEHHLGLTCDPINGLVQIPCIERNAVGAMRAINALSLA 372 + QIEYAAE+ +EHHLGLTCDP++GLVQIPCIERNA A RA++ +A Sbjct: 297 AAAATQMMGGTVRQIEYAAEMGLEHHLGLTCDPVDGLVQIPCIERNACAATRALSRAQMA 356 Query: 373 KFLSGTRKISFDLVVQTMYETGQDMNSSYRETSEGGLAKLY 413 G +I FD VV M +TG D+ S YRET+ GGLAK+Y Sbjct: 357 ILSDGMHRIPFDEVVAVMAQTGHDLPSLYRETARGGLAKVY 397 >A7VAB7.1 A7VAB7_BACUN Putative uncharacterized protein Length = 403 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 196/403 (48%), Positives = 259/403 (64%), Gaps = 6/403 (1%) Query: 16 MRSLTELYKIGSGPSSSHTMGPEKAARIFKAENEDADQFKALIYGSLAKTGKGHMTDKAI 75 M+S+ ELY+IG+GPSSSHTMGP KAA+IF + +A F+ +YGSLA TGKGHMT+ AI Sbjct: 1 MKSIKELYRIGTGPSSSHTMGPRKAAQIFLERHPEAAAFQVTLYGSLAATGKGHMTNVAI 60 Query: 76 IRALSPASAEVEFVPQPDFVLP-HPNTMDLFAY-QDGQQTNSMRAVSIGGGDIVIE--GR 131 L PA A VE + +P LP HPN M + +G++T+ S+GGG + E G Sbjct: 61 TETLQPA-APVEIIWEPKIFLPFHPNGMKFVSLDSEGKETDQWTVFSVGGGALAEENDGA 119 Query: 132 EETHGPDVYPENSFAEISAFCKANHIRLSDYVEQREGNQIWEFLQGIWEAMKRSIDEGLS 191 + PDVY NS EI +C+ +YV++ E + IW++LQ +W+ M+ ++ GL Sbjct: 120 SSVNTPDVYEMNSMTEILQWCERTGKSYWEYVKECEESDIWDYLQEVWKTMQAAVKRGLD 179 Query: 192 VTGILEGGLHVERKAKYLYHQRDMDESPETRENRIVSAYAFAVNEQNAAAGTVVTAPTCG 251 G+L G L++ RKA Y+ R + +V AYA AV+E+NA+ G +VTAPTCG Sbjct: 180 SEGVLPGPLNLRRKAS-TYYIRASGYKASLQSRGLVFAYALAVSEENASGGVIVTAPTCG 238 Query: 252 ASGVVPASLRYMQEKLQVPDERILRALAVGGLIGNLVKQNASISGAQCGCQAEVXXXXXX 311 + G+VPA L ++Q+ + D RILRALA GLIGN+VK NASISGA+ GCQAEV Sbjct: 239 SCGIVPAVLYHLQKSREFSDTRILRALATAGLIGNIVKTNASISGAEAGCQAEVGVACSM 298 Query: 312 XXXXXXXXXXXXIDQIEYAAEVAMEHHLGLTCDPINGLVQIPCIERNAVGAMRAINALSL 371 QIEYAAE+ +EHHLG+TCDP+ GLVQIPCIERNA A RA++A Sbjct: 299 ASAAANQLFGGSPAQIEYAAEMGLEHHLGMTCDPVCGLVQIPCIERNAYAAARALDANLY 358 Query: 372 AKFLSGTRKISFDLVVQTMYETGQDMNSSYRETSEGGLAKLYK 414 + F G ++SFD VV+ M ETG D+ S Y+ETSEGGLAK YK Sbjct: 359 SSFTDGMHRVSFDKVVEVMKETGNDLPSLYKETSEGGLAKDYK 401 >Q64WW1.1 Q64WW1_BACFR L-serine dehydratase Length = 402 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 192/402 (47%), Positives = 256/402 (63%), Gaps = 5/402 (1%) Query: 16 MRSLTELYKIGSGPSSSHTMGPEKAARIFKAENEDADQFKALIYGSLAKTGKGHMTDKAI 75 M+S+ ELY+IG+GPSSSHTMGP KAA +F + +A FK +YGSLA TGKGHMTD AI Sbjct: 1 MKSIKELYRIGTGPSSSHTMGPRKAAEMFLTRHPEAASFKVTLYGSLAATGKGHMTDVAI 60 Query: 76 IRALSPASAEVEFVPQPDFVLP-HPNTMDLFAYQ-DGQQTNSMRAVSIGGGDIVIEGREE 133 I L P +A V+ + QP LP HPN M+ A G + + S+GGG + + ++ Sbjct: 61 IDTLKP-TAPVDIIWQPKIFLPFHPNGMNFVALDAGGNELENWTVYSVGGGALAEDNKQP 119 Query: 134 T-HGPDVYPENSFAEISAFCKANHIRLSDYVEQREGNQIWEFLQGIWEAMKRSIDEGLSV 192 + P+VY NS EI +C+ +YV++ E IW++L+ +W+ MK S+ GL Sbjct: 120 SIESPEVYSMNSMTEILDWCEHTGKSYWEYVKECEDPDIWDYLKEVWDTMKESVQRGLEQ 179 Query: 193 TGILEGGLHVERKAKYLYHQRDMDESPETRENRIVSAYAFAVNEQNAAAGTVVTAPTCGA 252 G+L G L++ RKA Y+ R + +V AYA AV+E+NA+ G +VTAPTCG+ Sbjct: 180 EGVLPGPLNLRRKAS-TYYIRATGYKASLQSRGLVFAYALAVSEENASGGKIVTAPTCGS 238 Query: 253 SGVVPASLRYMQEKLQVPDERILRALAVGGLIGNLVKQNASISGAQCGCQAEVXXXXXXX 312 GV+PA L ++ + + + RILRALA GLIGN+VKQNASISGA+ GCQ EV Sbjct: 239 CGVMPAVLYHLAKSREFSEMRILRALATAGLIGNIVKQNASISGAEVGCQGEVGVACAMA 298 Query: 313 XXXXXXXXXXXIDQIEYAAEVAMEHHLGLTCDPINGLVQIPCIERNAVGAMRAINALSLA 372 QIEYAAE+ +EHHLG+TCDP+ GLVQIPCIERNA A RA++A + Sbjct: 299 SAAANQLFGGSPAQIEYAAEMGLEHHLGMTCDPVCGLVQIPCIERNAYAAARALDANLYS 358 Query: 373 KFLSGTRKISFDLVVQTMYETGQDMNSSYRETSEGGLAKLYK 414 F G ++SFD V+Q M +TG D+ S Y+ETSEGGLAK YK Sbjct: 359 SFTDGMHRVSFDKVIQVMKQTGHDLPSLYKETSEGGLAKDYK 400 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,244,346,332 Number of extensions: 87564282 Number of successful extensions: 240884 Number of sequences better than 1.0e-05: 1629 Number of HSP's gapped: 235148 Number of HSP's successfully gapped: 2108 Length of query: 417 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 279 Effective length of database: 1,760,596,133 Effective search space: 491206321107 Effective search space used: 491206321107 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)