BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0502.0006.p (437 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LVL3.1 A6LVL3_CLOB8 Putative transcriptional regulator 693 0.0 Q184V0.1 Q184V0_CLOD6 Putative uncharacterized protein 157 2e-36 C0BAH4.1 C0BAH4_9FIRM Putative uncharacterized protein 154 2e-35 C4G1S2.1 C4G1S2_ABIDE Putative uncharacterized protein 146 4e-33 Q183R2.1 Q183R2_CLOD6 Putative uncharacterized protein 145 1e-32 >A6LVL3.1 A6LVL3_CLOB8 Putative transcriptional regulator Length = 437 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/432 (75%), Positives = 374/432 (86%) Query: 1 MKINLGIITPETHMDYFRAIEEEMRPLCQFRFLTISNFRETTDIYLKNLDSVDGFVISGR 60 MKI LGIIT E++MDYFR IEEE++ +C+FR TISN RET D+YLKNLDSVDGFVISGR Sbjct: 1 MKIRLGIITTESYMDYFRDIEEELQSVCKFRIFTISNLRETKDVYLKNLDSVDGFVISGR 60 Query: 61 MLYESIDKECLDDKVPVHILHDDENLLYRELFRLLVTEPGLDISRIYVDYAYVIDSFSEF 120 +LYESIDKECLD KVP HIL D+E LLYRELFRLL+TEPGLDISRIY+D+AY+IDSFSEF Sbjct: 61 ILYESIDKECLDTKVPTHILQDNETLLYRELFRLLLTEPGLDISRIYLDFAYIIDSFSEF 120 Query: 121 QQYLTHEGKPVDSGDLLERVETMLENHITLWEDKKIDLSITAFGHFVPELQKHGVRYILI 180 Q+YLTH+GKP+DS +L ERVETMLENHITLWE+ KIDLSITAF HFVPEL+KHGV+YILI Sbjct: 121 QKYLTHQGKPIDSDNLFERVETMLENHITLWEENKIDLSITAFSHFVPELKKHGVKYILI 180 Query: 181 RPTLENVKXXXXXXXXXXXXLKLKNQRAVVACLSAQSEQPPSTEQLQELKVLVGRFLHDM 240 RPTLENVK L+LK++ AVVACLS ++ P S EQL ELKVL GRFL M Sbjct: 181 RPTLENVKETISGIINEITILELKSRSAVVACLSIETVHPQSEEQLHELKVLAGRFLSSM 240 Query: 241 NLADTAQISDGYVRLYTTYGNFMRITSNANNCTLLEYLEERIQGKVKIGWGSGHEYFQAN 300 NL DTAQ+S+G+V+LYTTYGNF +ITSNA NC LL+YLEE KV IGWGSGHEY+QAN Sbjct: 241 NLPDTAQVSEGFVKLYTTYGNFTKITSNAQNCALLKYLEEHASDKVIIGWGSGHEYYQAN 300 Query: 301 VNATKAHRQAEAYTGSCSFFIDENQKVIGPMRSMHVIQFSEQGDPEIIALAKRIGINNIN 360 NA +AHRQA A+TGSCSFFI+E+QKVIGPM++M+VIQF E+ DP I+ALAK IGINNIN Sbjct: 301 ENAIRAHRQANAFTGSCSFFINEDQKVIGPMQNMNVIQFCEKADPAIMALAKSIGINNIN 360 Query: 361 LQKIMSYAEIMRTNKLSSEDVAECLSMTVRGANRILNKIEENKYAQTVFEKRDNSKGRPK 420 LQKIM YAEIMRTNKLSSEDVA+CLS+TVRGANRILNKIEE +YA+TVFEKRD+ KGRP+ Sbjct: 361 LQKIMYYAEIMRTNKLSSEDVAQCLSITVRGANRILNKIEEKEYARTVFEKRDSGKGRPQ 420 Query: 421 KYYELLFLDKEG 432 KYYELLFLD EG Sbjct: 421 KYYELLFLDSEG 432 >Q184V0.1 Q184V0_CLOD6 Putative uncharacterized protein Length = 442 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/403 (26%), Positives = 200/403 (49%), Gaps = 15/403 (3%) Query: 37 NFRETTDIYLKNLDSVDGFVISGRMLYESIDKECLDDKVPVHILHDDENLLYRELFRLLV 96 +F D+YL+ D DGF +SG + ++I K+ K P+ D Y +L+ Sbjct: 36 DFSHVGDLYLEIEDRFDGFAVSGPIPKKAITKKAGTIKKPLVDFSTDLQSYYDMFLKLIF 95 Query: 97 TEPGLDISRIYVDYAYVIDSFSEFQQYLTHE--GKPVDS----------GDLLERVETML 144 LD SR Y D D+ + YL++ G +DS D+ + + + Sbjct: 96 KYNTLDFSRAYFDLTDWADNPKDISYYLSNGTFGDLMDSIDENASKMSLSDIAKLEKKIA 155 Query: 145 ENHITLWEDKKIDLSITAFGHFVPELQKHGVRYILIRPTLENVKXXXXXXXXXXXXLKLK 204 + HI LW + KID S T F VP LQ GV + I P ++ +K ++K Sbjct: 156 KKHINLWNEGKIDFSTTRFSSIVPMLQNAGVNFHFIYPDIDLLKNTFNNLIKDIHLHRMK 215 Query: 205 -NQRAVVACLSAQSEQPPSTEQLQELKVLVGRFLHDMNLADTAQISDGYVRLYTTYGNFM 263 NQ +V+ + ST L ++ ++ D + + +++T Sbjct: 216 GNQPSVIYITVKDTNYDDST--LDQVYKILNSIKKDKLTDFIIEKNSNSFKIFTKCETIK 273 Query: 264 RITSNANNCTLLEYLEERIQGKVKIGWGSGHEYFQANVNATKAHRQAEAYTGSCSFFIDE 323 +T N C + E +E KV +G+G G++ QA +A A+++++ + SF ++E Sbjct: 274 SLTKNFTACYIKESIENSTNIKVCVGYGIGNDIKQAMSSAISANKESKINHLNYSFLVNE 333 Query: 324 NQKVIGPMRSMHVIQFSEQGDPEIIALAKRIGINNINLQKIMSYAEIMRTNKLSSEDVAE 383 N + IGP+ ++ S + P I +AK ++ + +QKI+S EI++ ++++ ++++ Sbjct: 334 NYETIGPLLCDKLLTVSNKVTPHINTIAKSSKLSTLTIQKIISVTEILQRDEVTPKELSS 393 Query: 384 CLSMTVRGANRILNKIEENKYAQTVFEKRDNSKGRPKKYYELL 426 CL++TVR ANR L+ + ++ A ++EK++++KGRP++ Y+L Sbjct: 394 CLNVTVRTANRFLSSLLKSGNATILYEKQNSTKGRPERVYKLF 436 >C0BAH4.1 C0BAH4_9FIRM Putative uncharacterized protein Length = 439 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/439 (24%), Positives = 207/439 (47%), Gaps = 14/439 (3%) Query: 1 MKINLGIITPETHMDYFRAIEEEMRPLCQFRFLTISNFRETTDIYLKNLDSVDGFVISGR 60 M+ + IT + + I E++ C + ++ + F +++Y DGF+ISG+ Sbjct: 1 MRRKIVAITSQYLKEPISQIVSELKLNCDIQVVSYNKFDTISEVYDSYAGDTDGFLISGK 60 Query: 61 MLYESIDKECLDDKVPVHILHDDENLLYRELFRLLVTEPGLDISRIYVDYAYVID---SF 117 + +I+ P+ D LYR L LL++ LD+ RI +D+ ID + Sbjct: 61 IAKAAIESTAHAYNRPIVSFEIDIAGLYRALLNLLISNRDLDMDRIILDFLIPIDGGCTA 120 Query: 118 SEFQQYLTHEGKPVDSGDLLERVE----TMLENH-----ITLWEDKKIDLSITAFGHFVP 168 + F + L + P + + + + +ENH I +W + ++D+ + + + +P Sbjct: 121 TAFLKELDIDTVPPHINNWTKALTRTSISTIENHVLSELIRMWNNNEMDMVLCQYSNILP 180 Query: 169 ELQKHGVRYILIRPTLENVKXXXXXXXXXXXXLKLKNQRAVVACLSAQSEQPPSTEQLQE 228 EL+ HG+ I P++ +++ +++ V+ +S +S + E +Q+ Sbjct: 181 ELRAHGIPTIYPLPSVSHIRDLANELLSTIELEHMRSNLPVIINVSPRSSTDNTPENIQQ 240 Query: 229 LKVLVGRFLHDMNLADTAQISDGYVRLYTTYGNFMRITSNANNCTLLEYLEERIQGKVKI 288 + V + F + +Q D + TT IT N C L E+L ++ + + Sbjct: 241 IYVCMEDFFKKNLMNCISQKVDNHCSALTTVEMLQHITHNNKVCELNEFLTGKLHFECAV 300 Query: 289 GWGSGHEYFQANVNATKAHRQAEAYTGSCSFFIDENQKVIGPMRSMHVIQFSEQGDPEII 348 G+G G + A N+ A ++A + S F +EN +IGP+ S Q + Sbjct: 301 GYGIGANFDNAIRNSVNARKEAVQFGKS--FIQNENGDMIGPLGSSDRRVIQNQYVQNLG 358 Query: 349 ALAKRIGINNINLQKIMSYAEIMRTNKLSSEDVAECLSMTVRGANRILNKIEENKYAQTV 408 +AK+ ++ + ++K+++ +NK+++ ++AE + TVR ANRI+ +E A+ Sbjct: 359 KIAKQCNLSPVTIKKVLASTHAAGSNKITTHELAERMGSTVRNANRIIQNLENGGVAKLA 418 Query: 409 FEKRDNSKGRPKKYYELLF 427 + + N+KGRP K YEL F Sbjct: 419 YTQTTNAKGRPVKVYELYF 437 >C4G1S2.1 C4G1S2_ABIDE Putative uncharacterized protein Length = 434 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/437 (23%), Positives = 205/437 (46%), Gaps = 17/437 (3%) Query: 1 MKINLGIITPETHMDYFRAIEEEMRPLCQFRFLTISNFRETTDIYLKNLDSVDGFVISGR 60 MK+ + IIT Y + + +++ + NF +DIY VDGF++SG+ Sbjct: 1 MKLKIMIITSNYLYSYVKELIDKIGAEHEIDVKIYDNFSNISDIYNTYASEVDGFIVSGK 60 Query: 61 MLYESIDKECLDDKVPVHILHDDENLLYRELFRLLVTEPGLDISRIYVDYAYVIDSFSEF 120 + E+I + + P+ +YR + L++ + +D++R+ D+ I Sbjct: 61 IAKEAILNNKMVVRKPIVSFDITVAEIYRSIINLMLKDRNIDLNRVIFDFLIPICDEISA 120 Query: 121 QQYLTHEGKPVDSGDLLERVETMLENHIT------------LWEDKKIDLSITAFGHFVP 168 L + K ++ + + + +HIT LW+ ID + + + Sbjct: 121 SSVLENVEKDFFLSNIEKWNKELRLDHITVIEEQLRKEIVHLWKHNAIDYVVCQYSSIIK 180 Query: 169 ELQKHGVRYILIRPTLENVKXXXXXXXXXXXXLKLKNQRAVVACLSAQSEQPPSTEQLQE 228 L++ G+ + PT E ++ +++ V+ + ++ S +++ E Sbjct: 181 SLEEQGIPFYYPLPTREQMRLSIKKLITMINIDRMRGNFPVILRIDILNKNAKSADKINE 240 Query: 229 LKVLVGRFLHDMNLADTAQISDGYVRLYTTYGNFMRITSNANNCTLLEYLEERIQGKVKI 288 F + + ++I D +++ T FM IT N + +YL ++ GK + Sbjct: 241 S---AKSFFAENLIVYNSRIEDDNIKIQLTVSQFMFITDNCKTSKITKYLSDKQNGKFVV 297 Query: 289 GWGSGHEYFQANVNATKAHRQAEAYTGSCSFFIDENQKVIGPMRSMHVIQFSEQGDPEII 348 +G G + +A N+ A + E+ + S+ +DEN+ +IGP+ S + ++ D I Sbjct: 298 SYGIGDNFNKALENSYIAAK--ESILRNSSYVVDENETLIGPLDSENYLRVENNLDDNTI 355 Query: 349 ALAKRIGINNINLQKIMSYAEIMRTNKLSSEDVAECLSMTVRGANRILNKIEENKYAQTV 408 +A+ ++ +QKIM+ ++ ++ ++++ ++++ L+ TVR ANRIL K+ YA+ + Sbjct: 356 EIARTCNLSTTTVQKIMAITKLNQSKRITTAELSKQLTGTVRNANRILQKLVTGGYAKVI 415 Query: 409 FEKRDNSKGRPKKYYEL 425 EK N+KGRP K YEL Sbjct: 416 LEKTTNTKGRPTKIYEL 432 >Q183R2.1 Q183R2_CLOD6 Putative uncharacterized protein Length = 458 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 117/451 (25%), Positives = 213/451 (47%), Gaps = 27/451 (5%) Query: 1 MKINLGIITPETHM-DYFRAIEEEMRPLCQFRFLTISN---FRETTDIYLKNLDSVDGFV 56 MK +G +T M D F+ +E+ C+ F+ + F +IY + +D+ DGFV Sbjct: 1 MKYKIGFLTTSYFMSDKFKQALKELNDTCEITFIELKGENPFNNLPNIYYEQVDNFDGFV 60 Query: 57 ISGRMLYESIDKECLDDKVPVHILHDDENLLYRELFRLLVTEPGLDISRIYVDYAYVIDS 116 SG + Y + D KVP++ L DE Y+ LF+LL ++ +D ++ ++D+ ++ Sbjct: 61 CSGIVPYSELIINIKDIKVPLNFLKLDERDFYKYLFKLLNSQKDIDFTKSFMDFLREDNN 120 Query: 117 FSEFQQYLTHEGKPVDSGDL--------LERV-ETMLENHITLWEDKKIDLSITAFGHFV 167 + + + P D +++ + +LE H+ L D KI+LS T Sbjct: 121 YYDIYSLIDSNKCPYTIKDFNIPQPVYDFKKLNDKLLEIHLDLLRDNKINLSFTRNYIIS 180 Query: 168 PELQKHGVRYILIRPTLENVKXXXXXXXXXXXXLKLKNQRAVVACLSAQSEQPPSTE--- 224 EL K G I + P+ E++ L ++ ++ S + + + Sbjct: 181 CELNKLGYDCIYMVPSTESILNTFKSLVNEITLQNLDKNKSATCIVTVNSSEYINEDLIF 240 Query: 225 -----QLQELKVLVGRFLHDMNLADTAQISDGYVRLYTTYGNFMRITSNANNCTLLEYLE 279 Q Q ++ + +D + ++TT +T+N + + E L+ Sbjct: 241 KNDEIQNQIYNTILNSLSRHGFYGVQVKKNDMKIEIHTTKEMLNNMTNNYTDFFISEDLK 300 Query: 280 ERIQGKVKIGWGSGHEYFQANVNATKAHRQAEAYTGSCSFFIDENQKVIGPMRSMHVIQF 339 E I+ + IGWG G+ A NA +A+ ++ + G+C+F +++ IGP+ S + Sbjct: 301 E-IKYSLNIGWGIGNTNIHAEQNARQANGKSASLNGNCTFIVNDTNDTIGPLYSN---KN 356 Query: 340 SEQGDPEIIA--LAKRIGINNINLQKIMSYAEIMRTNKLSSEDVAECLSMTVRGANRILN 397 S + IA +A I ++N N+ KIM +N +S+E +A+ +++T+R ANRIL+ Sbjct: 357 SNNIEDSSIANKVASFIPLSNTNVSKIMCMINDRNSNNVSAEILADYMNITLRSANRILS 416 Query: 398 KIEENKYAQTVFEKRDNSKGRPKKYYELLFL 428 + + A V K DN +GRPKK Y++ FL Sbjct: 417 ILYKAGIATIVNTKLDNQRGRPKKIYKVDFL 447 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,447,094,660 Number of extensions: 97988474 Number of successful extensions: 243265 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 243144 Number of HSP's successfully gapped: 83 Length of query: 437 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 298 Effective length of database: 1,751,175,118 Effective search space: 521850185164 Effective search space used: 521850185164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)