BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0500.0014.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJC3.1 B3KJC3_9BACI Cyclic nucleotide-binding 254 2e-66 A7GMY9.1 A7GMY9_BACCN Cyclic nucleotide-binding protein 195 1e-48 B9IVH4.1 B9IVH4_BACCQ cAMP-dependent protein kinase, regulatory ... 193 4e-48 B7HKH3.1 B7HKH3_BACC7 Putative transcriptional regulator 193 4e-48 C2S144.1 C2S144_BACCE Transcriptional regulator 193 4e-48 >B3KJC3.1 B3KJC3_9BACI Cyclic nucleotide-binding Length = 169 Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/166 (73%), Positives = 141/166 (84%) Query: 1 MILHKGEVLFRQGDACQNLFQVKSGLFKVIRLHENGNMVLFNLLYPGETVPHHSLISPKE 60 MILHKGE+LFRQGD+ +L+ ++SGLFKV RLH NGNMVLFN+LYPGETVPHHSLISPKE Sbjct: 1 MILHKGEILFRQGDSGDHLYHIRSGLFKVTRLHANGNMVLFNILYPGETVPHHSLISPKE 60 Query: 61 AHGTAVAMMKSEVELVPAAEWYRELREDPDKVMEIALLLQEKVRFMQTRLDHLTVGTPGE 120 HGTA+A+++SEVE++ A WY +L EDP K +E+A LLQEKVRFMQ RLDHLTVG P E Sbjct: 61 THGTAIALIQSEVEVISAEAWYGQLEEDPRKPLEVARLLQEKVRFMQMRLDHLTVGGPAE 120 Query: 121 RLDLLKRWLLEYSHGAELTDLLTQEEIGQLIGVRRETVNRLLRNPG 166 RL+LL +WL EYS G LT+ LTQEEIGQLIGVRRETVNRLLR G Sbjct: 121 RLELLIQWLDEYSQGIHLTEYLTQEEIGQLIGVRRETVNRLLREHG 166 >A7GMY9.1 A7GMY9_BACCN Cyclic nucleotide-binding protein Length = 170 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/164 (58%), Positives = 125/164 (76%), Gaps = 1/164 (0%) Query: 1 MILHKGEVLFRQGDACQNLFQVKSGLFKVIRLHENGNMVLFNLLYPGETVPHHSLISPKE 60 MILHKGE+LFRQG+ L+ VK+GL KV+RL E+G LFN++ PGET+PHHSLISPKE Sbjct: 1 MILHKGELLFRQGEEG-PLYFVKTGLLKVVRLQEDGTPFLFNIIVPGETIPHHSLISPKE 59 Query: 61 AHGTAVAMMKSEVELVPAAEWYRELREDPDKVMEIALLLQEKVRFMQTRLDHLTVGTPGE 120 HGTA+A+MK+E+E + + EWY +LR++P+ +AL LQ K+R MQ R+D LT +P E Sbjct: 60 YHGTAIALMKTEIEPIMSQEWYDKLRKNPELYANVALQLQTKLRMMQQRIDQLTTVSPRE 119 Query: 121 RLDLLKRWLLEYSHGAELTDLLTQEEIGQLIGVRRETVNRLLRN 164 RL L++W Y G + ++LTQ EIGQLIGVRRETVNRLLR+ Sbjct: 120 RLHRLQQWFSLYLGGIPIYEILTQTEIGQLIGVRRETVNRLLRD 163 >B9IVH4.1 B9IVH4_BACCQ cAMP-dependent protein kinase, regulatory subunit Length = 170 Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/163 (58%), Positives = 120/163 (73%), Gaps = 1/163 (0%) Query: 1 MILHKGEVLFRQGDACQNLFQVKSGLFKVIRLHENGNMVLFNLLYPGETVPHHSLISPKE 60 MILHKG+VLFRQG+ L+ +K+GL KV+RL ENG LFN++ PGET+PHHSLISPKE Sbjct: 1 MILHKGDVLFRQGEDGP-LYFIKTGLLKVVRLEENGTPFLFNIIVPGETIPHHSLISPKE 59 Query: 61 AHGTAVAMMKSEVELVPAAEWYRELREDPDKVMEIALLLQEKVRFMQTRLDHLTVGTPGE 120 HGTA+A+MK+EVE + + EWY +L+ DP IA+ LQ K+R MQ R+D LT +P E Sbjct: 60 YHGTAIALMKTEVEPIMSNEWYDQLQADPASYANIAMQLQSKLRMMQQRIDQLTTVSPKE 119 Query: 121 RLDLLKRWLLEYSHGAELTDLLTQEEIGQLIGVRRETVNRLLR 163 RL L+ W Y + ++LTQ EIGQLIG+RRETVNRLLR Sbjct: 120 RLHRLQEWFTLYLGDIPIYEILTQTEIGQLIGIRRETVNRLLR 162 >B7HKH3.1 B7HKH3_BACC7 Putative transcriptional regulator Length = 170 Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/163 (58%), Positives = 120/163 (73%), Gaps = 1/163 (0%) Query: 1 MILHKGEVLFRQGDACQNLFQVKSGLFKVIRLHENGNMVLFNLLYPGETVPHHSLISPKE 60 MILHKG+VLFRQG+ L+ +K+GL KV+RL ENG LFN++ PGET+PHHSLISPKE Sbjct: 1 MILHKGDVLFRQGEDGP-LYFIKTGLLKVVRLEENGTPFLFNIIVPGETIPHHSLISPKE 59 Query: 61 AHGTAVAMMKSEVELVPAAEWYRELREDPDKVMEIALLLQEKVRFMQTRLDHLTVGTPGE 120 HGTA+A+MK+EVE + + EWY +L+ DP IA+ LQ K+R MQ R+D LT +P E Sbjct: 60 YHGTAIALMKTEVEPIMSNEWYDQLQADPASYANIAMQLQSKLRMMQQRIDQLTTVSPKE 119 Query: 121 RLDLLKRWLLEYSHGAELTDLLTQEEIGQLIGVRRETVNRLLR 163 RL L+ W Y + ++LTQ EIGQLIG+RRETVNRLLR Sbjct: 120 RLHRLQEWFTLYLGDIPIYEILTQTEIGQLIGIRRETVNRLLR 162 >C2S144.1 C2S144_BACCE Transcriptional regulator Length = 170 Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/163 (58%), Positives = 120/163 (73%), Gaps = 1/163 (0%) Query: 1 MILHKGEVLFRQGDACQNLFQVKSGLFKVIRLHENGNMVLFNLLYPGETVPHHSLISPKE 60 MILHKG+VLFRQG+ L+ +K+GL KV+RL ENG LFN++ PGET+PHHSLISPKE Sbjct: 1 MILHKGDVLFRQGEDGP-LYFIKTGLLKVVRLEENGTPFLFNIIVPGETIPHHSLISPKE 59 Query: 61 AHGTAVAMMKSEVELVPAAEWYRELREDPDKVMEIALLLQEKVRFMQTRLDHLTVGTPGE 120 HGTA+A+MK+EVE + + EWY +L+ DP IA+ LQ K+R MQ R+D LT +P E Sbjct: 60 YHGTAIALMKTEVEPIMSNEWYDQLQADPASYANIAMQLQSKLRMMQQRIDQLTTVSPKE 119 Query: 121 RLDLLKRWLLEYSHGAELTDLLTQEEIGQLIGVRRETVNRLLR 163 RL L+ W Y + ++LTQ EIGQLIG+RRETVNRLLR Sbjct: 120 RLHRLQEWFTLYLGDIPIYEILTQTEIGQLIGIRRETVNRLLR 162 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 972,822,827 Number of extensions: 37815834 Number of successful extensions: 119352 Number of sequences better than 1.0e-05: 474 Number of HSP's gapped: 119957 Number of HSP's successfully gapped: 474 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)