BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0500.0010.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1D8C5.1 Q1D8C5_MYXXD Putative uncharacterized protein 295 2e-78 C4BV96.1 C4BV96_9FUSO Putative uncharacterized protein 288 4e-76 A3IYS6.1 A3IYS6_9CHRO Putative uncharacterized protein 275 3e-72 B9XL17.1 B9XL17_9BACT Putative uncharacterized protein 267 8e-70 C1R1A1.1 C1R1A1_9ACTO Putative uncharacterized protein 262 2e-68 >Q1D8C5.1 Q1D8C5_MYXXD Putative uncharacterized protein Length = 284 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/264 (57%), Positives = 183/264 (69%), Gaps = 9/264 (3%) Query: 1 MNAVVGSHDLLMITLDTLRYDAA--VLEEANCPNLCGT---GSWEKRHTPGSFTYAAHHA 55 MNAV+G+HDLL ITLDTLRYD A + + PNL G WE+RH+P SFTYAAHHA Sbjct: 18 MNAVIGTHDLLFITLDTLRYDVAEALAAQGRTPNLSALLPGGRWEQRHSPASFTYAAHHA 77 Query: 56 FFGGFLPTPATTDKSRHVRLFHSRNTGMKT-HPDTWLFDTPDVVSGLAAAGYRTLCIGGV 114 FF GFLPTPAT H RLF R G +T DT + D PD+V+GLA GY T+CIGGV Sbjct: 78 FFAGFLPTPAT--PGLHPRLFSMRFEGSETTASDTCVLDAPDLVTGLAGRGYHTICIGGV 135 Query: 115 IFFSKKVPLARVLPGYFQHSYWRMTFGVTNPRSTEHQVNHALKLLKDTPLDQRLFLFLNV 174 FF+K+ PL VLPG F S+W GVT+PRSTEHQV A++ L+ P +QR+FLF+NV Sbjct: 136 GFFNKRNPLGNVLPGLFAESHWSPELGVTDPRSTEHQVTLAVQRLEALPREQRVFLFINV 195 Query: 175 SAIHGPNHYFVPGARKDSIDTQRAALRYVDGELGRLFGAFRERGNPVFCLAFSDHGEAFG 234 SA+H PN ++VPGA +DS ++ AAL YVD +L LF A R RG P FC+ SDHG +G Sbjct: 196 SALHQPNRHYVPGATQDSRESHAAALAYVDSQLPPLFAALRRRG-PAFCIVCSDHGTTYG 254 Query: 235 EDGYHGHRLAHETVWNVPYREFFL 258 EDG+ GHRLAH VW VPY E L Sbjct: 255 EDGFTGHRLAHPVVWTVPYAELLL 278 >C4BV96.1 C4BV96_9FUSO Putative uncharacterized protein Length = 282 Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 142/279 (50%), Positives = 180/279 (64%), Gaps = 22/279 (7%) Query: 1 MNAVVGSHDLLMITLDTLRYDAAVLE--EANCPNLCGTGSWEKRHTPGSFTYAAHHAFFG 58 MN +VG D+L +TLDTLRYD A E N PNLC WEKRH+PG +TY++HH+FF Sbjct: 5 MNEIVGKSDILFLTLDTLRYDVAEQEYLAGNLPNLCADSGWEKRHSPGDYTYSSHHSFFA 64 Query: 59 GFLPTPAT-TDKSRHVRLFHSRNTGMK--THPDTWLFDTPDVVSGLAAAGYRTLCIGGVI 115 GFLPTP+ + LF +N+ +K H + + FD P++V + GY+T+CIGGVI Sbjct: 65 GFLPTPSEYVPLNEREYLFSMKNSMLKYKNHSNIYYFDAPNIVKAMEKEGYKTVCIGGVI 124 Query: 116 FFSKKVPLARVLPGYFQHSYWRMTFGVTNPRSTEHQVNHALKLLKDTPLDQRLFLFLNVS 175 FF+K L VLP F SYW FGVTNP+S E+QV ALK+LK D+R+FLFLN+S Sbjct: 125 FFNKSNELCSVLPNMFAESYWNPKFGVTNPKSVEYQVKQALKVLKSLGKDERIFLFLNIS 184 Query: 176 AIHGPNHYFV-----------PG-----ARKDSIDTQRAALRYVDGELGRLFGAFRERGN 219 AIHGPN+Y++ PG ++ D ++Q AALRYVD L LF RER N Sbjct: 185 AIHGPNYYYLEEYKNKMDEYDPGKNVLASKYDGTESQAAALRYVDKCLEPLFEYMRER-N 243 Query: 220 PVFCLAFSDHGEAFGEDGYHGHRLAHETVWNVPYREFFL 258 FC+A SDHG +GEDG+ GH LAHE VW VPY+ FFL Sbjct: 244 KTFCIALSDHGTCYGEDGFEGHNLAHEVVWTVPYKHFFL 282 >A3IYS6.1 A3IYS6_9CHRO Putative uncharacterized protein Length = 268 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/264 (51%), Positives = 184/264 (69%), Gaps = 11/264 (4%) Query: 1 MNAVVGSHDLLMITLDTLRYDAA--VLEEANCPNLCGT---GSWEKRHTPGSFTYAAHHA 55 MN +VG +D+L ITLDTLRYD A + + PNL WEKRHTPGSFTYAAHHA Sbjct: 4 MNQIVGKYDILFITLDTLRYDVAQQLFKAGKTPNLAKVLPPTGWEKRHTPGSFTYAAHHA 63 Query: 56 FFGGFLPTPATTDKSRHVRLFHSRNTGMKTHPD-TWLFDTPDVVSGLAAAGYRTLCIGGV 114 FF GFLPTP T H RLF + G T + T++F++ ++VSGLA GY+T+CIGGV Sbjct: 64 FFAGFLPTPTT--PGIHPRLFAVKFEGSSTTTENTYVFNSDNIVSGLADIGYKTVCIGGV 121 Query: 115 IFFSKKVPLARVLPGYFQHSYWRMTFGVTNPRSTEHQVNHALKLLKDTPLDQRLFLFLNV 174 FF+K PL++VLP FQ SYW GVT+ STE+Q+N A ++L+ TPL+++LFLF+N+ Sbjct: 122 GFFNKLTPLSKVLPNLFQESYWSRELGVTDINSTENQINLAQEILETTPLNKKLFLFINI 181 Query: 175 SAIHGPNHYFVPGA---RKDSIDTQRAALRYVDGELGRLFGAFRERGNPVFCLAFSDHGE 231 SA H PN++++ +KD+I++ AAL YVD +L +L+ +++ N FC+ SDHG Sbjct: 182 SAFHQPNYFYLDKNKPDKKDTIESHGAALEYVDRQLSKLWDIIKKKNNCTFCILCSDHGT 241 Query: 232 AFGEDGYHGHRLAHETVWNVPYRE 255 A+GE+GY GHR++ ETVW VPY E Sbjct: 242 AYGENGYTGHRVSDETVWTVPYFE 265 >B9XL17.1 B9XL17_9BACT Putative uncharacterized protein Length = 275 Score = 267 bits (682), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 139/264 (52%), Positives = 175/264 (66%), Gaps = 9/264 (3%) Query: 1 MNAVVGSHDLLMITLDTLRYDAA--VLEEANCPNLCG---TGSWEKRHTPGSFTYAAHHA 55 +N ++G HD+L +TLDTLRYD A + PNL T WEKRH+P +FTYAAHHA Sbjct: 4 INELIGKHDILFVTLDTLRYDVAQECWAKGRTPNLASVLPTTGWEKRHSPATFTYAAHHA 63 Query: 56 FFGGFLPTPATTDKSRHVRLFHSRNTGMKTHPD-TWLFDTPDVVSGLAAAGYRTLCIGGV 114 FF GFLPTP RH RLF +R G +T + T + D PD+V+GLA Y T+CIGGV Sbjct: 64 FFAGFLPTPEA--PGRHPRLFATRFAGSETTTESTCVLDAPDIVTGLAEHDYHTVCIGGV 121 Query: 115 IFFSKKVPLARVLPGYFQHSYWRMTFGVTNPRSTEHQVNHALKLLKDTPLDQRLFLFLNV 174 FF+K PL RVLP F+ S+W GVTN +ST +QV A ++L+ P QR+FLFLN+ Sbjct: 122 GFFNKLNPLGRVLPCLFEESHWSEELGVTNQQSTANQVVVAQRILEALPAHQRVFLFLNI 181 Query: 175 SAIHGPNHYFVPGARKDSIDTQRAALRYVDGELGRLFGAFRERGNPVFCLAFSDHGEAFG 234 SAIH PN +++ GA KDS+ + AAL YVD LG LF ++R P+ + SDHG A+G Sbjct: 182 SAIHQPNRFYLDGAVKDSLLSHTAALEYVDAHLGSLFRIMQKRA-PILGIICSDHGTAYG 240 Query: 235 EDGYHGHRLAHETVWNVPYREFFL 258 ED YHGHRLAH VW VPY +F L Sbjct: 241 EDNYHGHRLAHPVVWEVPYADFVL 264 >C1R1A1.1 C1R1A1_9ACTO Putative uncharacterized protein Length = 274 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/266 (53%), Positives = 179/266 (67%), Gaps = 11/266 (4%) Query: 1 MNAVVGSHDLLMITLDTLRYDAAVLEEA--NCPNLCGT--GSWEKRHTPGSFTYAAHHAF 56 M+++VGSHDLL +TLDTLR+D AV E A PNL WE+RHTPGSFT+AAH AF Sbjct: 6 MHSIVGSHDLLFVTLDTLRHDVAVEELAAGRLPNLARVLPDGWERRHTPGSFTFAAHSAF 65 Query: 57 FGGFLPTPATTDKSRHVRLFHSRNTGMKT-HPDTWLFDTPDVVSGLAAAGYRTLCIGGVI 115 F GFLPTP T RH RLF +R G +T DTW+FD PD+V+GL AGYRT+C+GGV Sbjct: 66 FAGFLPTPDT--PGRHPRLFAARFGGSETTAEDTWVFDEPDLVAGLRKAGYRTVCVGGVG 123 Query: 116 FFSKKVPLARVLPGYFQHSYWRMTFGVTNPRSTEHQVNHALKLLKDTPLDQRLFLFLNVS 175 FF+ + L +VLPGYF S+W GVT+P S HQV +++ P +Q LFLF+NV Sbjct: 124 FFNPESRLGQVLPGYFDESHWSAATGVTDPDSFAHQVGVVEQVVAAQPEEQPLFLFVNVP 183 Query: 176 AIHGPNHYFVPGARKDSIDTQ---RAALRYVDGELGRLFGAFRERGNPVFCLAFSDHGEA 232 A+H PN +++ GA KD+ DT+ AALRYVD +GRLF R F + SDHG A Sbjct: 184 ALHQPNWFYLDGATKDAGDTRASHAAALRYVDTHIGRLFTLMAAR-RACFTIVCSDHGTA 242 Query: 233 FGEDGYHGHRLAHETVWNVPYREFFL 258 +GEDG+ GHR+ H+ VW VPY +F L Sbjct: 243 YGEDGHVGHRIGHDVVWTVPYADFVL 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.140 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,774,488,143 Number of extensions: 76314870 Number of successful extensions: 172635 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 172492 Number of HSP's successfully gapped: 49 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)