BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0500.0004.p (253 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4XM84.1 A4XM84_CALS8 Transcriptional regulator, DeoR family 189 3e-46 B9MLU0.1 B9MLU0_ANATD Transcriptional regulator, DeoR family 186 2e-45 B0K450.1 B0K450_THEPX Transcriptional regulator, DeoR family 185 4e-45 Q8R736.1 Q8R736_THETN Transcriptional regulator of sugar metabolism 184 5e-45 B0KBE4.1 B0KBE4_THEP3 Transcriptional regulator, DeoR family 183 1e-44 >A4XM84.1 A4XM84_CALS8 Transcriptional regulator, DeoR family Length = 252 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 103/231 (44%), Positives = 142/231 (61%), Gaps = 1/231 (0%) Query: 1 MFEEERKRSIVQFVERHTRASVQELSQDLGVSESTVXXXXXXXXXXXXXXXTHGGAVSLQ 60 MF EERK I Q ++ V EL++ GVSEST+ THGGAV+ Sbjct: 1 MFAEERKSKIAQMIKEGKSVKVNELAKLFGVSESTIRRDLNELESLGIVKRTHGGAVNNF 60 Query: 61 SVNFEAAFPDKADRFLEEKQRIARKAVEMIQEGDAILLDGGTTTLQIARALKTFSNLKVI 120 + FE +F +K DRF +EK+ I + A + I++GD I+LD GTTT IAR +K N+ VI Sbjct: 61 ATTFELSFAEKEDRFAKEKEYIGKLAAKYIEDGDTIILDSGTTTQYIARNIKA-KNVIVI 119 Query: 121 TNSMIALNELKDCRNIEVSITGGMLRPDTLAFVGPMTERSLEMVRVDKAFIGTNGLDIHE 180 TNS+ NEL + +IEV +TGG++R T A VG +T+ +L+ R DKAFI NG+ I Sbjct: 120 TNSVNIANELSNREDIEVIVTGGVIRSKTKALVGDITQSTLKQFRCDKAFIAANGVSIEF 179 Query: 181 GITTPNMLEAATKRKMISVAKQAILLADHSKIGQVSFCKVGDLQEIDHCIL 231 G+TTP LEAA KR MI AK+ L+AD SK GQV+F + + +++ I+ Sbjct: 180 GVTTPTHLEAAVKRTMIENAKEVFLVADSSKFGQVTFALICPVDRLNNYII 230 >B9MLU0.1 B9MLU0_ANATD Transcriptional regulator, DeoR family Length = 250 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 140/232 (60%), Gaps = 1/232 (0%) Query: 1 MFEEERKRSIVQFVERHTRASVQELSQDLGVSESTVXXXXXXXXXXXXXXXTHGGAVSLQ 60 MF EERK I Q ++ V EL++ GVSEST+ THGGAV+ Sbjct: 1 MFAEERKSRIAQMIKSGQSVKVSELAKLFGVSESTIRRDLAELEALGIIKRTHGGAVNNF 60 Query: 61 SVNFEAAFPDKADRFLEEKQRIARKAVEMIQEGDAILLDGGTTTLQIARALKTFSNLKVI 120 +FE +F +K D+F +EK+ I + A I +GD I+LD GTTT IAR + T N+ +I Sbjct: 61 ITSFEPSFAEKEDKFAKEKEYIGKLAASFIHDGDTIILDSGTTTQYIARNI-TAKNITII 119 Query: 121 TNSMIALNELKDCRNIEVSITGGMLRPDTLAFVGPMTERSLEMVRVDKAFIGTNGLDIHE 180 TNS+ EL + N+EV +TGG++R T A VG +T+ L RVDKAF+ NG+ I Sbjct: 120 TNSVNIAYELSNNDNLEVIVTGGVIRTKTKALVGDITQSVLRQFRVDKAFVAANGVSIEF 179 Query: 181 GITTPNMLEAATKRKMISVAKQAILLADHSKIGQVSFCKVGDLQEIDHCILD 232 G+TTP+ +EAA KR MI AK+ L+AD SK GQV+F + ++ +D+ I D Sbjct: 180 GVTTPSHVEAAIKRAMIENAKEVFLVADSSKFGQVTFSLICPVERLDYIITD 231 >B0K450.1 B0K450_THEPX Transcriptional regulator, DeoR family Length = 274 Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 148/249 (59%), Gaps = 1/249 (0%) Query: 1 MFEEERKRSIVQFVERHTRASVQELSQDLGVSESTVXXXXXXXXXXXXXXXTHGGAVSLQ 60 MF EER+ I + + + SV ELS+ VSEST+ THGGA+ Sbjct: 7 MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILNV 66 Query: 61 SVNFEAAFPDKADRFLEEKQRIARKAVEMIQEGDAILLDGGTTTLQIARALKTFSNLKVI 120 ++E AF +K D LE K++I + A MI+EGD+I+LD GTTTL+IAR LK + L V+ Sbjct: 67 GTHYEPAFFEKEDVELEAKRKIGKIAASMIEEGDSIILDAGTTTLEIARNLKN-TKLTVV 125 Query: 121 TNSMIALNELKDCRNIEVSITGGMLRPDTLAFVGPMTERSLEMVRVDKAFIGTNGLDIHE 180 TNS + EL +IE+ +TGG+ R T A VGP+ E ++ +VDKAFIGTN + + Sbjct: 126 TNSPLIAIELSKHEDIELIVTGGIQRWRTKALVGPIAEMVIKQFKVDKAFIGTNAISFED 185 Query: 181 GITTPNMLEAATKRKMISVAKQAILLADHSKIGQVSFCKVGDLQEIDHCILDTGAPEGFI 240 G+ TP+++EA TK+ M VA + ++ADH+K G+ SF K D+++I I D + Sbjct: 186 GLMTPDLIEANTKKAMCDVASEVYIVADHTKFGKKSFVKFADIKDITAIITDDEIDYEIV 245 Query: 241 RGLEGLDLD 249 R E ++D Sbjct: 246 RKYEQANID 254 >Q8R736.1 Q8R736_THETN Transcriptional regulator of sugar metabolism Length = 268 Score = 184 bits (468), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 140/232 (60%), Gaps = 1/232 (0%) Query: 1 MFEEERKRSIVQFVERHTRASVQELSQDLGVSESTVXXXXXXXXXXXXXXXTHGGAVSLQ 60 MF EER+ I + + + SV ELS+ VSEST+ THGGA+ Sbjct: 1 MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILKT 60 Query: 61 SVNFEAAFPDKADRFLEEKQRIARKAVEMIQEGDAILLDGGTTTLQIARALKTFSNLKVI 120 ++E AF +K + LE K++I R A +I+EGD ILLD GTTTL+IAR LK L V+ Sbjct: 61 GTHYEPAFFEKEEVELEAKRKIGRIAASLIEEGDTILLDSGTTTLEIARNLKNM-RLTVV 119 Query: 121 TNSMIALNELKDCRNIEVSITGGMLRPDTLAFVGPMTERSLEMVRVDKAFIGTNGLDIHE 180 TNS + EL +IE+ +TGG+ R T A VGP+ E + +VDKAFIGTN + + Sbjct: 120 TNSPLIAIELSKYEDIELIVTGGIQRWRTKALVGPIAEMVIRQFKVDKAFIGTNAISFED 179 Query: 181 GITTPNMLEAATKRKMISVAKQAILLADHSKIGQVSFCKVGDLQEIDHCILD 232 G+ TP+++EA TK+ MI VA + ++ADH+K G+ SF K DL++I I D Sbjct: 180 GLMTPDLIEANTKKTMIEVASEVYVVADHTKFGKKSFVKFADLKDITAIITD 231 >B0KBE4.1 B0KBE4_THEP3 Transcriptional regulator, DeoR family Length = 274 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 147/249 (59%), Gaps = 1/249 (0%) Query: 1 MFEEERKRSIVQFVERHTRASVQELSQDLGVSESTVXXXXXXXXXXXXXXXTHGGAVSLQ 60 MF EER+ I + + + SV ELS+ VSEST+ THGGA+ Sbjct: 7 MFGEERRLKIAEIISKDKSISVSELSKLFNVSESTIRRDLHVLEEKGFIQRTHGGAILNV 66 Query: 61 SVNFEAAFPDKADRFLEEKQRIARKAVEMIQEGDAILLDGGTTTLQIARALKTFSNLKVI 120 ++E AF +K D LE K++I + A MI+EGD+I+LD GTTTL+IAR LK + L V+ Sbjct: 67 GTHYEPAFFEKEDVELEAKRKIGKIAASMIEEGDSIILDAGTTTLEIARNLKN-TKLTVV 125 Query: 121 TNSMIALNELKDCRNIEVSITGGMLRPDTLAFVGPMTERSLEMVRVDKAFIGTNGLDIHE 180 TNS + EL +IE+ +TGG+ R T A VGP+ E + +VDKAFIGTN + + Sbjct: 126 TNSPLIAIELSKHEDIELIVTGGIQRWRTKALVGPIAEMVIRQFKVDKAFIGTNAISFED 185 Query: 181 GITTPNMLEAATKRKMISVAKQAILLADHSKIGQVSFCKVGDLQEIDHCILDTGAPEGFI 240 G+ TP+++EA TK+ M V+ + ++ADH+K G+ SF K D+++I I D + Sbjct: 186 GLMTPDLIEANTKKAMCDVSSEVYIVADHTKFGKKSFVKFADIKDITAIITDDEIDYEIV 245 Query: 241 RGLEGLDLD 249 R E ++D Sbjct: 246 RKYEQANID 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,212,243,269 Number of extensions: 40469747 Number of successful extensions: 124092 Number of sequences better than 1.0e-05: 3850 Number of HSP's gapped: 119970 Number of HSP's successfully gapped: 3850 Length of query: 253 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 120 Effective length of database: 1,807,701,208 Effective search space: 216924144960 Effective search space used: 216924144960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)