BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0500.0001.p (366 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGD8.1 B3KGD8_9BACI Putative uncharacterized protein 400 e-110 B3KDW8.1 B3KDW8_9BACI Putative uncharacterized protein 315 6e-84 A6CHR3.1 A6CHR3_9BACI Putative uncharacterized protein 252 5e-65 Q2BEW4.1 Q2BEW4_9BACI Putative uncharacterized protein 229 4e-58 Q9K8T1.1 Q9K8T1_BACHD BH2921 protein 219 4e-55 >B3KGD8.1 B3KGD8_9BACI Putative uncharacterized protein Length = 358 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/352 (53%), Positives = 274/352 (77%) Query: 1 MLQSKYFRTCLAIIAFLTILYLGSKVVFLITPLVAIFNLLLVPMMLSGFMYYLLRPLVNF 60 M+QSKYFRTC IIA L I+YLG+++ FL P+V++FN+L+VP+ ++GF YYLLRP+V++ Sbjct: 1 MMQSKYFRTCFGIIALLLIIYLGAEISFLFRPIVSMFNMLIVPVAMAGFFYYLLRPIVDY 60 Query: 61 LESKKLNRMLSILLIYVVFIGLFVLFWVLVWPTLREQIQNFIDNTPYLVQGIQEQFNKLQ 120 LE +K+ R + +L++Y VF GL +F ++VWPTLREQI+NFI N P+LV+G++EQ ++LQ Sbjct: 61 LERRKIKRSIGVLMLYFVFAGLCAIFGIVVWPTLREQIENFISNAPFLVEGVEEQIDQLQ 120 Query: 121 SDPYFSRFFKGDADLTARISGYLSDTITWVTNSMSNLXXXXXXXXXXXATLPIILYYMLK 180 + ++SR+ +++L+ ++ Y++ ITW++NS++NL AT+PIILYYMLK Sbjct: 121 QNQFWSRYIPTESELSTSLTEYMNRIITWISNSINNLISVVSGVVVIIATIPIILYYMLK 180 Query: 181 DGHKLSPILLSLVPRKYRKEGQDMLQDIDSALSGFIVTRVLLNVVLGAMLYVGFLIIGLP 240 +G KL P LLS++PR+YR++GQ++L +ID+ALS FI+ +V+LN++L M+Y+GFLIIGLP Sbjct: 181 EGSKLPPRLLSVLPRRYRRDGQEVLGEIDTALSNFIIGKVILNLILSVMIYIGFLIIGLP 240 Query: 241 YSLMLAIISIPLNFIPYVGSLLAAVPVVIVGFIESPTMAIWSXXXXXXXXXXXDNVLSPI 300 YSL+L +IS LNFIPY+G+LLA VPVVI+GFIESP++AIWS DN+L+P+ Sbjct: 241 YSLLLTVISFFLNFIPYIGALLATVPVVIIGFIESPSIAIWSVVVIVIAQQIQDNILTPV 300 Query: 301 IYGKSLDVHPXXXXXXXXXGGDFYGIIGVLIALPVYMILKIIFLRIYEIIIA 352 IYGK LD+HP GGDF+G++G+L+A+P YMI+KII +RIYE+ +A Sbjct: 301 IYGKQLDIHPLTTVVLILVGGDFFGLLGILLAIPAYMIIKIIAVRIYELFLA 352 >B3KDW8.1 B3KDW8_9BACI Putative uncharacterized protein Length = 359 Score = 315 bits (806), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 157/346 (45%), Positives = 239/346 (69%) Query: 4 SKYFRTCLAIIAFLTILYLGSKVVFLITPLVAIFNLLLVPMMLSGFMYYLLRPLVNFLES 63 +K+F+ CLA+I LTI+YLGS V F+ P+++ F+++LVP+MLSGF YYLLRPLV+ LE Sbjct: 5 NKFFKLCLAVILVLTIIYLGSLVDFIFRPVLSFFSIILVPLMLSGFFYYLLRPLVDLLEK 64 Query: 64 KKLNRMLSILLIYVVFIGLFVLFWVLVWPTLREQIQNFIDNTPYLVQGIQEQFNKLQSDP 123 +KLNR L+ILL+YVVF G+ F + VWP+LR+QI + N P L + EQ +L+++ Sbjct: 65 RKLNRSLAILLLYVVFAGILTGFILGVWPSLRDQIVALVQNAPALFAKLGEQLQELENNG 124 Query: 124 YFSRFFKGDADLTARISGYLSDTITWVTNSMSNLXXXXXXXXXXXATLPIILYYMLKDGH 183 +F F +A+ +++ YL+ T++TN + NL T PI+LYYMLK+G Sbjct: 125 FFQDIFPENANPLTQLTDYLNQGFTFLTNYIMNLFSFVSNFAIVLFTFPILLYYMLKEGG 184 Query: 184 KLSPILLSLVPRKYRKEGQDMLQDIDSALSGFIVTRVLLNVVLGAMLYVGFLIIGLPYSL 243 K +++S +P +++ EG +L +I++AL GFIV RVL+N+ LG ++Y+GFLIIGLPY+L Sbjct: 185 KFGKMVVSFLPDRFKGEGASVLDEINNALKGFIVGRVLVNLALGVLMYIGFLIIGLPYAL 244 Query: 244 MLAIISIPLNFIPYVGSLLAAVPVVIVGFIESPTMAIWSXXXXXXXXXXXDNVLSPIIYG 303 +L ++++ NFIP++G++L+A+P+VI+GFI+SP AIWS DN++ P I+G Sbjct: 245 LLTVVAVIANFIPFIGAILSAIPIVIIGFIQSPGTAIWSLVVILAAQQIQDNLIGPYIFG 304 Query: 304 KSLDVHPXXXXXXXXXGGDFYGIIGVLIALPVYMILKIIFLRIYEI 349 K L +HP G D GIIG+L+ +P+YMI+KII R+Y++ Sbjct: 305 KQLAIHPITIIILVLVGQDLGGIIGILLIVPIYMIIKIIVTRVYQL 350 >A6CHR3.1 A6CHR3_9BACI Putative uncharacterized protein Length = 359 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 218/354 (61%), Gaps = 5/354 (1%) Query: 1 MLQSKYFRTCLAIIAFLTILYLGSKVVFLITPLVAIFNLLLVPMMLSGFMYYLLRPLVNF 60 M + K+FR A++ L I+YLG+ V F+ PL + L P++L G +YYL RPLVN Sbjct: 1 MPEGKWFRRGYAVVLLLLIIYLGTLVDFIFKPLTVLVTALFGPIVLGGILYYLFRPLVNL 60 Query: 61 LESKKLNRMLSILLIYVVFIGLFVLFWVLVWPTLREQIQNFIDNTPYLVQGIQEQFNKLQ 120 L +KK+ R ++ILL+Y+ IGL P L+ QI + I+NTP L++ ++ LQ Sbjct: 61 L-AKKMPRAVAILLLYLAVIGLITGVVFYAGPILQRQISSLIENTPQLIEKFRQTLLNLQ 119 Query: 121 SDPYFSRFFKGD----ADLTARISGYLSDTITWVTNSMSNLXXXXXXXXXXXATLPIILY 176 + SRF GD D+T R++ YL++ + + +++ N+ +P +LY Sbjct: 120 QSEWVSRFQNGDRFSLEDITNRLTDYLNEAASTLGSNLMNILSTITNIIVLIILIPFVLY 179 Query: 177 YMLKDGHKLSPILLSLVPRKYRKEGQDMLQDIDSALSGFIVTRVLLNVVLGAMLYVGFLI 236 YMLKDG+KLS +L LVP+K+ +EG+ +L D+D ALS +I +V+++ +G ++Y+G+LI Sbjct: 180 YMLKDGNKLSGKILKLVPKKHEEEGKKVLSDMDDALSSYIQGQVIVSFCVGVLVYIGYLI 239 Query: 237 IGLPYSLMLAIISIPLNFIPYVGSLLAAVPVVIVGFIESPTMAIWSXXXXXXXXXXXDNV 296 IGL YSL+++I+++ N IP++G L++++P +IV F++ P MA+W N+ Sbjct: 240 IGLDYSLVISILTMLTNVIPFIGPLISSIPAIIVAFLQEPIMALWVIVVILIVQQIEGNL 299 Query: 297 LSPIIYGKSLDVHPXXXXXXXXXGGDFYGIIGVLIALPVYMILKIIFLRIYEII 350 +SP + G+ LD+HP G F G +G+L+A+P Y +LK+IF+ +Y I Sbjct: 300 ISPQVMGRKLDIHPLTIILLLVAAGKFAGFLGLLLAVPAYAVLKVIFIHVYRFI 353 >Q2BEW4.1 Q2BEW4_9BACI Putative uncharacterized protein Length = 369 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 208/353 (58%), Gaps = 4/353 (1%) Query: 1 MLQSKYFRTCLAIIAFLTILYLGSKVVFLITPLVAIFNLLLVPMMLSGFMYYLLRPLVNF 60 M SK+F+ II + I++L +K+ F+ TP+ F L +P ++SG +YYLLRP+V F Sbjct: 1 MPSSKWFKIGYGIIIVMVIIFLATKIDFIFTPIEIFFETLFMPFLISGVIYYLLRPIVYF 60 Query: 61 LESKKLNRMLSILLIYVVFIGLFVLFWVLVWPTLREQIQNFIDNTPYLVQGIQEQFNKLQ 120 L KK+ +++SILLIY++ IG V P L+ Q ++ +DN P ++G++ + ++LQ Sbjct: 61 LNRKKVPKVVSILLIYLIVIGGTAALVYFVGPELQRQFKDLMDNYPQYIEGLRNKADELQ 120 Query: 121 SDPYFSRFFKGD----ADLTARISGYLSDTITWVTNSMSNLXXXXXXXXXXXATLPIILY 176 + +FSRF + D +T ++S Y + +++ ++ + T+P I++ Sbjct: 121 NSAWFSRFQENDYITFDYITEQMSSYFKSNFSDLSSRLTGVFSIVTSVVTVIVTVPFIVF 180 Query: 177 YMLKDGHKLSPILLSLVPRKYRKEGQDMLQDIDSALSGFIVTRVLLNVVLGAMLYVGFLI 236 Y+LKD S ++ +P E + +L+D+D ALS +I + +++ ++G M+Y+G+LI Sbjct: 181 YLLKDSEGASKGMVRYLPYFQAAETRKILKDMDEALSSYIQGQAIVSFIVGVMMYIGYLI 240 Query: 237 IGLPYSLMLAIISIPLNFIPYVGSLLAAVPVVIVGFIESPTMAIWSXXXXXXXXXXXDNV 296 IG+ YSL+LAI+++ N IP++G LA VP VIVGF SP MA+ NV Sbjct: 241 IGINYSLILAIVAMLTNVIPFLGPFLALVPAVIVGFTMSPFMALKVILVVIVVQQIDGNV 300 Query: 297 LSPIIYGKSLDVHPXXXXXXXXXGGDFYGIIGVLIALPVYMILKIIFLRIYEI 349 SP+I G+ LDVHP G+ G+IG+++A+P Y I+K+I Y + Sbjct: 301 SSPLIMGRKLDVHPLTIILILLVAGNLAGLIGMIVAVPAYAIIKVIISHAYRL 353 >Q9K8T1.1 Q9K8T1_BACHD BH2921 protein Length = 361 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 122/353 (34%), Positives = 202/353 (57%), Gaps = 5/353 (1%) Query: 1 MLQSKYFRTCLAIIAFLTILYLGSKVVFLITPLVAIFNLLLVPMMLSGFMYYLLRPLVNF 60 M Q K+FR I+ L I+YLGS V ++ P+V L P++++G +YYL RP+V Sbjct: 1 MPQGKWFRFGYGIVLVLLIIYLGSLVDWIFRPIVVFVQTLFAPVIIAGILYYLFRPIVGL 60 Query: 61 LESKKLNRMLSILLIYVVFIGLFVLFWVLVWPTLREQIQNFIDNTPYLVQGIQEQFNKLQ 120 L SKK+NR LSIL+++++ IG F F ++V P L+ Q Q+ +N P L+ +++ F LQ Sbjct: 61 L-SKKMNRGLSILILFLMIIGAFTAFSLIVGPELQRQFQSLYNNLPTLINQVRDTFIALQ 119 Query: 121 SDPYFSRFFKGDA----DLTARISGYLSDTITWVTNSMSNLXXXXXXXXXXXATLPIILY 176 S+ F+RF + + ++ +R L+D I + +++ +P IL+ Sbjct: 120 SNELFNRFQESETFQPEEMISRFVNSLNDIIGTIGANITGFIGALANFFIILVLVPFILF 179 Query: 177 YMLKDGHKLSPILLSLVPRKYRKEGQDMLQDIDSALSGFIVTRVLLNVVLGAMLYVGFLI 236 Y+LK+G KL LL L +K + EG+ +L D+D LS +I +++++ +G + Y+ +LI Sbjct: 180 YLLKEGEKLPVQLLKLFNKKQQHEGRLILADMDKMLSSYIQGQIIVSFCVGILCYIAYLI 239 Query: 237 IGLPYSLMLAIISIPLNFIPYVGSLLAAVPVVIVGFIESPTMAIWSXXXXXXXXXXXDNV 296 IGL Y+L+LA++++ N IP+VG + P VIV FI+SP A+ N+ Sbjct: 240 IGLDYALILALVAMFTNVIPFVGPWIGTFPAVIVAFIDSPLTALIVVIVVVVIQQIESNL 299 Query: 297 LSPIIYGKSLDVHPXXXXXXXXXGGDFYGIIGVLIALPVYMILKIIFLRIYEI 349 +SP + GK L +HP G F G++G+L+A+P Y + K+I Y + Sbjct: 300 ISPQVMGKKLAIHPITIIFILLVAGRFAGVVGMLLAVPTYAVGKVIVTHSYRL 352 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.148 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,814,222,731 Number of extensions: 69288768 Number of successful extensions: 299612 Number of sequences better than 1.0e-05: 2803 Number of HSP's gapped: 295209 Number of HSP's successfully gapped: 2803 Length of query: 366 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 229 Effective length of database: 1,770,017,148 Effective search space: 405333926892 Effective search space used: 405333926892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 132 (55.5 bits)