BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0016.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9B5K8.1 A9B5K8_HERA2 Putative uncharacterized protein 149 3e-34 B4VQH3.1 B4VQH3_9CYAN Putative uncharacterized protein 147 1e-33 Q08S40.1 Q08S40_STIAU Hemolysin-related protein 114 9e-24 Q08U51.1 Q08U51_STIAU Putative surface protein 108 5e-22 Q093F3.1 Q093F3_STIAU Cartilage oligomeric matrix protein 107 2e-21 >A9B5K8.1 A9B5K8_HERA2 Putative uncharacterized protein Length = 675 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 134/246 (54%), Gaps = 9/246 (3%) Query: 9 LGVAGNFNAFIFGDFTQSYDQIHGRLAAEGNITLQGYGV----SKDAPGGDVLVAGKNLT 64 LG AG+FN F FG+ TQS I GR+AA GNI Q +GV + D LVAG +LT Sbjct: 418 LGTAGDFNVFTFGNITQSNTDIEGRVAAGGNINFQNFGVGVRLTNSNGTRDDLVAGGSLT 477 Query: 65 LTDGTIY-GAAVYGGTISTTRAD-LKETPRQGTPIDFAAEEQFLVRRSDELAALTQTQPF 122 T+G++Y G VYG T S L T RQG PI+FA E+ L RS L+ Sbjct: 478 YTNGSVYNGNVVYGTTKSLNGVSVLNGTVRQGQPINFANEQTSLRNRSQAWGGLSANGTT 537 Query: 123 VKEYGKMTINAPDA-YNVIHXXXXXXXXXNGLQFNIAGDATVIINVGGSAVKIPNFQ--F 179 V EYG + ++ + N+ NGL N+ ++V+IN+ G+ ++ NF+ Sbjct: 538 VYEYGAVKLSGTNTTLNIFTVDGAQLNNANGLNINVPASSSVLINITGTNNRMQNFETFL 597 Query: 180 WGGKPRKVLFNFYEAASVNIGNTTIEGTILAPHASVFYDHAELHGTLIAKAFSGYVQMHH 239 K+++NFY+A S ++ I+GTILAP A V + + +++GTLI + G + HH Sbjct: 598 TNVDQTKIVYNFYQATSFSLSGIGIKGTILAPFADVSFSNGQINGTLIGNSLIGGGESHH 657 Query: 240 YPYEGS 245 YP+ G Sbjct: 658 YPFNGC 663 >B4VQH3.1 B4VQH3_9CYAN Putative uncharacterized protein Length = 318 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/248 (36%), Positives = 131/248 (52%), Gaps = 11/248 (4%) Query: 9 LGVAGNFNAFIFGDFTQSYDQIHGRLAAEGNITLQ----GYGVSKDAPGGDVLVAGKNLT 64 LG+A ++N F+ GD QS G++A GN+T G + +D GDVL+ GKNL Sbjct: 35 LGIASDYNIFVLGDVNQSNTDSEGKVAIGGNVTFSDFYAGMNLPQDGNNGDVLIVGKNLV 94 Query: 65 LTDGTIYGAAVYGGTISTTRADLKE--TPRQGTPIDFAAEEQFLVRRSDELAALTQTQPF 122 +G + G AVYG T S T L+ T RQ PIDFAA Q L S L L T Sbjct: 95 FQNGQVRGNAVYGETGSLTNVTLEHGGTLRQDNPIDFAAASQELQALSQFLGGLEATGQT 154 Query: 123 VKEYGKMTINAPDA-YNVIHXXXXXXXXXNGLQFNIAGDATVIINVGGSAVKIPNF--QF 179 YG +T+ D NV H + FN+ +T I+N+ G A + NF F Sbjct: 155 EMAYGGITLTGSDEDQNVFHLNASDLSNASSFNFNVDSGSTTIVNISGDAASLQNFGFNF 214 Query: 180 WGG--KPRKVLFNFYEAASVNIGNTTIEGTILAPHASVFYDHAELHGTLIAKAFSGYVQM 237 GG + + V++NFYEA ++ IEG+ILAP A+ +D+ +++G LIA + +G Q Sbjct: 215 NGGIDQRQNVIYNFYEARDLSASGIGIEGSILAPFAAFNFDNGQINGNLIAASLTGVGQS 274 Query: 238 HHYPYEGS 245 ++Y + G+ Sbjct: 275 NNYLFNGN 282 >Q08S40.1 Q08S40_STIAU Hemolysin-related protein Length = 1519 Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 13/238 (5%) Query: 14 NFNAFIFGDFTQSYDQIHGRLAAEGNITLQGYGVSKDAPGGDV---LVAGKNLTLTDGTI 70 ++N F+ GD+ + D + GR+AA GNI++ + V P D +VAG NLTL++G++ Sbjct: 1271 DYNLFLTGDYNEGTD-LEGRVAAGGNISMTNFSVGWKLPSSDASPKIVAGGNLTLSNGSV 1329 Query: 71 YGAAVYGGTISTTRADLKE--TPRQGTPIDFAAEEQFLVRRSDELAALTQT-QPFVKEYG 127 +G AVYGGT S + D + T +GTP+DFAA L S ELA L T + + Sbjct: 1330 WGDAVYGGTYSGAQVDYLQGGTSVKGTPVDFAARGAQLRALSSELANLPATGETQAPPWN 1389 Query: 128 KMTI---NAPDAYNVIHXXXXXXXXXNGLQF-NIAGDATVIINVGGSAVKIPNFQFWGGK 183 +T+ N V L N++ + +INV G +V + + + G Sbjct: 1390 VLTLVGTNLESGLEVFEVSAADLSRTTQLIIRNVSTTSVAVINVRGPSVTLKGGREYAGS 1449 Query: 184 PRKVLFNFYEAASVNIGNTTIEGTILAPHASVFYDHAELHGTLIAKAFSGYVQMHHYP 241 VLFN+ +A S+ I GT+LAP A +F+ + G + AK+ +G + HH P Sbjct: 1450 --NVLFNYVDATSITATAYGIHGTVLAPEARIFFSNGSWDGGIYAKSLTGNAEGHHDP 1505 >Q08U51.1 Q08U51_STIAU Putative surface protein Length = 807 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 9/236 (3%) Query: 14 NFNAFIFGDFTQSYDQIHGRLAAEGNITLQGYGVSKDAPGGD---VLVAGKNLTLTDGTI 70 ++N F+ D+T D + GR+AA GNI++ + V + P D VLVAG NLTL+ G I Sbjct: 550 DYNVFLTEDYTLGTD-VEGRVAAGGNISMTNFSVGWNLPAWDSAPVLVAGGNLTLSQGGI 608 Query: 71 YGAAVYGGTISTTRAD-LKETPRQGTPIDFAAEEQFLVRRSDELAALTQTQPFVKE-YGK 128 +G A +GGT S ++ P QG P+DFA + S LA+L +E +G Sbjct: 609 WGDASHGGTYSAKNVSYVRGAPSQGFPVDFATRAAQVRTLSTRLASLPANSLTRRESWGG 668 Query: 129 MTINAPDAY-NVIHXXXXXXXXXNGLQFNIAGDATVIINV-GGSAVKIPNFQFWGG-KPR 185 + ++ ++ NV L + + V++N+ G SA F GG R Sbjct: 669 LMLSGSSSHVNVFDVNASDFSGTVLLSIDAPSGSLVVLNIRGASATLSGGHSFSGGIDQR 728 Query: 186 KVLFNFYEAASVNIGNTTIEGTILAPHASVFYDHAELHGTLIAKAFSGYVQMHHYP 241 VLFNF +A S+N ++ GT+LAP+A V +++ G L AK+ SG + H P Sbjct: 729 GVLFNFVDATSINASRYSLWGTLLAPNAHVNFNNGSFDGGLYAKSLSGNAEGHLNP 784 >Q093F3.1 Q093F3_STIAU Cartilage oligomeric matrix protein Length = 913 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 11/237 (4%) Query: 14 NFNAFIFGDFTQSYDQIHGRLAAEGNITLQGYGVSKDAPGGD---VLVAGKNLTLTDGTI 70 ++N F+ GD+T D + GR+AA GNI++ + V P D VLVAG +LTL+ G + Sbjct: 435 DYNVFVTGDYTLGTD-VEGRVAAGGNISMTNFSVGWKLPSSDTAPVLVAGGHLTLSHGGV 493 Query: 71 YGAAVYGGTISTTRAD-LKETPRQGTPIDFAAEEQFLVRRSDELAALTQTQPFVKE-YGK 128 +G A YGGT S ++ P QGTP+DFAA + S L++L+ +E +G Sbjct: 494 WGDAAYGGTYSANNVTYVRGAPAQGTPVDFAARGAEVRALSTRLSSLSANGITRRESWGG 553 Query: 129 MTINA--PDAYNVIHXXXXXXXXXNGLQFNIAGDATVIINV-GGSAVKIPNFQFWGG-KP 184 + ++ PD NV + L + + ++N+ G SA F GG Sbjct: 554 LMLSGSLPD-VNVFNVNASDFTGAVLLSIDAPAGSLAVLNIRGASATLSGGHSFSGGIDQ 612 Query: 185 RKVLFNFYEAASVNIGNTTIEGTILAPHASVFYDHAELHGTLIAKAFSGYVQMHHYP 241 R VLFNF +A S+N + GT+LAP+A V + + G + A++ +G + H P Sbjct: 613 RGVLFNFVDATSINAQGYGLWGTLLAPNAHVNFANGSFDGGIYARSLTGNAEGHLNP 669 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,579,094,649 Number of extensions: 62332677 Number of successful extensions: 130957 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 130916 Number of HSP's successfully gapped: 22 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)