BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0010.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF68.1 B3KF68_9BACI Binding-protein-dependent transport system... 363 9e-99 C5C501.1 C5C501_9MICO Binding-protein-dependent transport system... 279 2e-73 C0UXG1.1 C0UXG1_9BACT Carbohydrate ABC transporter membrane prot... 276 2e-72 B3K469.1 B3K469_9BACI Binding-protein-dependent transport system... 270 1e-70 B1DBB6.1 B1DBB6_9BACL Binding-protein-dependent transport system... 263 1e-68 >B3KF68.1 B3KF68_9BACI Binding-protein-dependent transport systems inner membrane component Length = 286 Score = 363 bits (932), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 169/286 (59%), Positives = 224/286 (78%) Query: 6 MVNAKSDKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEA 65 MV DK+FN I P+LYV+S+S+TP+ EV++NGGF++ P+ I+F A Sbjct: 1 MVRGLDDKIFNAIIYVILGICGLVAILPILYVVSVSITPFGEVLRNGGFILFPKEITFSA 60 Query: 66 YQRILADPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLF 125 Y+ +L + + ++ +TV +TV GTA+N++LT + AYPLSRRNL GR FFLL IV T+LF Sbjct: 61 YRTLLTESNIPKAFQITVLITVIGTAVNLVLTGLMAYPLSRRNLPGRNFFLLMIVFTLLF 120 Query: 126 NGGLIPTYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFENLPEELFESAKIDGAKEF 185 +GGLIPTYLVV+S+G+LD++W++I+P A+ +FNVLIMKSFFE LPEELFESA++DGAKEF Sbjct: 121 SGGLIPTYLVVKSMGLLDSIWAMILPNAVWSFNVLIMKSFFEGLPEELFESARMDGAKEF 180 Query: 186 RILWQIVIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLLLTQSNE 245 RIL QIV PLS+P ++TVGLFY+VGHWN FF AI Y+TD L+PLQVV+R +L+ +Q Sbjct: 181 RILLQIVTPLSVPVLLTVGLFYLVGHWNEFFQAIFYVTDRTLYPLQVVVREILMQSQQPL 240 Query: 246 LQAEVTVPTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIKG 291 AE +PT MQMA+V+ SLP+IV+YPF+QKHFTKGMLLG+IKG Sbjct: 241 ENAENMMPTQTMQMASVMIASLPVIVIYPFLQKHFTKGMLLGSIKG 286 >C5C501.1 C5C501_9MICO Binding-protein-dependent transport systems inner membrane component Length = 287 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 139/284 (48%), Positives = 202/284 (71%), Gaps = 2/284 (0%) Query: 9 AKSDKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEAYQR 68 A+SD+ F+T + PLL V+S S TPYSE++ NGG+ +P + + Y+ Sbjct: 5 ARSDRGFDTVVNVLLGLVIVAAVLPLLVVVSASFTPYSEILSNGGYT-LPTEFTLDGYRM 63 Query: 69 ILADPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLFNGG 128 +LAD L + +VT FVTV GTA+N++++ + AYPLS+ L GR L ++T LF+ G Sbjct: 64 VLADSRLQQGFVVTTFVTVVGTALNLVVSVLFAYPLSQHRLPGRRGILFVALLTTLFSAG 123 Query: 129 LIPTYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFENLPEELFESAKIDGAKEFRIL 188 +IPTYLVV++ G+LDT+W++IIP I+ FNV I+K+FFE +P ELFE+A+IDGA E R+L Sbjct: 124 IIPTYLVVKATGLLDTVWAMIIPTTISVFNVFILKTFFEGIPGELFEAARIDGAGELRLL 183 Query: 189 WQIVIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLLLTQSN-ELQ 247 +IV+PL++P +MT+GLFY VGHWN+F +A+LYI D L PLQVV+RN+L S+ Sbjct: 184 LRIVVPLAVPVLMTIGLFYAVGHWNTFMAAVLYIRDADLQPLQVVLRNLLTEVSSDAAAD 243 Query: 248 AEVTVPTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIKG 291 + VPT +M+AV+ +LP+I++YPFIQKHF G++LG++KG Sbjct: 244 PDAVVPTVTFRMSAVVLTALPMILLYPFIQKHFRHGVMLGSVKG 287 >C0UXG1.1 C0UXG1_9BACT Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 293 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 144/286 (50%), Positives = 209/286 (73%), Gaps = 5/286 (1%) Query: 9 AKSDKLFNTXXXXXXXXXXXXXIFPLLYVISMSLTPYSEVIKNGGFVV-IPRSISFEAYQ 67 +S+KL++ I P+ YV+ +S+TP+ + GG ++ P I+FEAY+ Sbjct: 8 GRSEKLWDAGVYLLLTLSAIVVIVPIWYVLMISITPFEVWARTGGTLLPHPSEITFEAYK 67 Query: 68 RILADPALGRSMLVTVFVTVTGTAINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLFNG 127 ++L+ L R+ V+VF+TV GT +N+I TTM AYPLS++N R R LLFI+ T+LFNG Sbjct: 68 QLLSSWRLPRAFQVSVFITVFGTLLNLIFTTMMAYPLSKKNFRLRNPILLFILFTLLFNG 127 Query: 128 GLIPTYLVVRSLGMLDTLWSLIIPGAIATFNVLIMKSFFENLPEELFESAKIDGAKEFRI 187 GL+PTY+VVR+LG++D+ +LI+PG I+ FNVLIMK+FF+N+P+EL E+AKIDGA +F++ Sbjct: 128 GLVPTYIVVRNLGLIDSYLALILPGLISGFNVLIMKAFFQNIPDELEEAAKIDGASDFQV 187 Query: 188 LWQIVIPLSIPSIMTVGLFYMVGHWNSFFSAILYITDVKLHPLQVVIRNMLL---LTQSN 244 LW I++PLS P + T+GLFY VGHWNSFF AILYI PLQVV+R +L LT Sbjct: 188 LWHIILPLSKPILATIGLFYAVGHWNSFFDAILYIRSADKQPLQVVLREILAAGNLTNYV 247 Query: 245 ELQAEVTVPTAAMQMAAVIAGSLPIIVVYPFIQKHFTKGMLLGAIK 290 ++ E T+PT +++MAAV+ ++P+++VYPF+Q+HFT G+LLG+IK Sbjct: 248 PVEHE-TMPTESLRMAAVVISTIPVLIVYPFLQRHFTAGVLLGSIK 292 >B3K469.1 B3K469_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 123/265 (46%), Positives = 195/265 (73%), Gaps = 6/265 (2%) Query: 31 IFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEAYQRILADPALGRSMLVTVFVTVTGT 90 ++P++Y+ ++SL+ SEV++ G + P+ + +AY ++L D + R+ L T+F T GT Sbjct: 31 VYPVVYITAVSLSATSEVVQ-GNITLFPKGFNLDAYAQVLNDDRVPRAYLNTIFYTALGT 89 Query: 91 AINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLFNGGLIPTYLVVRSLGMLDTLWSLII 150 AIN++LT +AAYPL+R+N GR FFLL I++TM N G+IP YL+V LG+LD++W+L++ Sbjct: 90 AINLLLTAVAAYPLARKNFFGRKFFLLAIIMTMFLNPGIIPNYLIVSELGLLDSVWALVL 149 Query: 151 PGAIATFNVLIMKSFFENLPEELFESAKIDGAKEFRILWQIVIPLSIPSIMTVGLFYMVG 210 P AI TF +LI+KSF+EN+ E L E+A +DGA E+RIL+QIV+PLS P++ ++GLFY +G Sbjct: 150 PNAIWTFELLILKSFYENMSESLREAAVVDGASEYRILFQIVLPLSKPALASIGLFYFMG 209 Query: 211 HWNSFFSAILYITDVKLHPLQVVIRNMLLLTQSNE----LQAEVTVPTAAMQMAAVIAGS 266 HWNSFF ++Y+ D ++PLQVV+R+ML+ +++ + A P AM+ A ++ Sbjct: 210 HWNSFFIPLIYLNDANMYPLQVVLRDMLIFSENGSNPSLVDASALAPQ-AMKNATIVLSM 268 Query: 267 LPIIVVYPFIQKHFTKGMLLGAIKG 291 +P++++YPF QK+F KG++LG+ KG Sbjct: 269 IPVLLIYPFAQKYFAKGVMLGSEKG 293 >B1DBB6.1 B1DBB6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/267 (47%), Positives = 191/267 (71%), Gaps = 7/267 (2%) Query: 31 IFPLLYVISMSLTPYSEVIKNGGFVVIPRSISFEAYQRILADPALGRSMLVTVFVTVTGT 90 + P +Y+I+ S +E+ K F+ IP + + AYQ I + + +S+ V+++VTV GT Sbjct: 29 VLPFIYIIAGSFASDAELTKRAVFL-IPSTFTTAAYQFIFSTDTILQSIKVSLYVTVVGT 87 Query: 91 AINMILTTMAAYPLSRRNLRGRTFFLLFIVITMLFNGGLIPTYLVVRSLGMLDTLWSLII 150 A+N+ T AY LS+RNL GR L IV +MLF GGLIPTYLVVR L +LD+ W+L++ Sbjct: 88 AVNLFFTVTMAYALSKRNLMGRNTVLNLIVFSMLFGGGLIPTYLVVRDLHLLDSFWALML 147 Query: 151 PGAIATFNVLIMKSFFENLPEELFESAKIDGAKEFRILWQIVIPLSIPSIMTVGLFYMVG 210 PGAI+ FN++I+K+FF+ LP EL E+A+IDG E +LW+IV+PLS+P + T LFY VG Sbjct: 148 PGAISAFNLIIVKNFFQELPAELEEAARIDGCTELGLLWKIVLPLSMPVLATFTLFYAVG 207 Query: 211 HWNSFFSAILYITDVKLHPLQVVIRNMLLLTQS-----NELQAE-VTVPTAAMQMAAVIA 264 HWN+F+SA+LYI D + PLQV++R ++LL+Q+ N + V P +++MA ++ Sbjct: 208 HWNNFYSALLYINDPQKWPLQVMLRQIVLLSQTAAGDINSMDPNFVAPPDQSIKMAVIVI 267 Query: 265 GSLPIIVVYPFIQKHFTKGMLLGAIKG 291 G++PI++VYPF+QKHF KG+L+G++KG Sbjct: 268 GTIPILLVYPFLQKHFAKGVLIGSVKG 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,480,121,267 Number of extensions: 53880071 Number of successful extensions: 231091 Number of sequences better than 1.0e-05: 6079 Number of HSP's gapped: 222346 Number of HSP's successfully gapped: 6080 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)