BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0498.0009.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF67.1 B3KF67_9BACI Binding-protein-dependent transport system... 422 e-116 C5C500.1 C5C500_9MICO Binding-protein-dependent transport system... 365 2e-99 C0UXG0.1 C0UXG0_9BACT Carbohydrate ABC transporter membrane prot... 350 8e-95 B3K9F8.1 B3K9F8_9BACI Binding-protein-dependent transport system... 281 4e-74 B3K6J1.1 B3K6J1_9BACI Binding-protein-dependent transport system... 279 2e-73 >B3KF67.1 B3KF67_9BACI Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/322 (61%), Positives = 256/322 (79%), Gaps = 4/322 (1%) Query: 1 MEESIGMTRNKTAESPLRQAWIRI----WGMRALYLMLLPCLIWYFVFKYLPMYGVIISF 56 ME + +T LR + I W +A Y+MLLP +I++ +F+Y PMYGVII+F Sbjct: 1 MEANHSLTPAPRIRFSLRTRLLMILKLAWRFKAFYIMLLPGIIYFVIFRYFPMYGVIIAF 60 Query: 57 KDYSFTDGILHSPWADPWYKYFKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILF 116 KD++ DGI S W DPWYK+F+ F++SPYF QL++NTLLISLYKL++G LP I+LAIL Sbjct: 61 KDFAILDGITGSSWVDPWYKHFQSFYESPYFSQLLTNTLLISLYKLLWGTLPPIMLAILL 120 Query: 117 HECRVMWLKRWVQTLSYMPHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGST 176 +ECR+ WLK VQTL+YMPHFLSW+II+GI + FS+ GL+NRWI EAGGSSI FL ST Sbjct: 121 NECRIRWLKSIVQTLTYMPHFLSWVIIFGILLTLFSQNGGLINRWIVEAGGSSIPFLTST 180 Query: 177 EWFRSMLVSTEIWKDIGWGAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNV 236 E+FRS+LV +E+W+++GWGAI+YLAA++GIDPTL+EAA+VDGASR+RMIWHITLPGIR++ Sbjct: 181 EYFRSILVGSEVWQNLGWGAIIYLAAMAGIDPTLYEAAKVDGASRMRMIWHITLPGIRSI 240 Query: 237 XXXXXXXXXGSIMDAGFEQIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKS 296 G ++DAGF+QIY+ YN +VY V DIIDTWVYRTGL+Q+NFSLA+ VGLFKS Sbjct: 241 IVLLFVLKLGHLLDAGFDQIYILYNIQVYPVADIIDTWVYRTGLQQLNFSLASAVGLFKS 300 Query: 297 AIGFVLVLGANKLAKRWGGGIW 318 IG +LVLGAN++AK+WG GIW Sbjct: 301 VIGLILVLGANRVAKKWGEGIW 322 >C5C500.1 C5C500_9MICO Binding-protein-dependent transport systems inner membrane component Length = 326 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 179/301 (59%), Positives = 232/301 (77%) Query: 18 RQAWIRIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKY 77 RQA R W R L LML+P L++ V+KY PMYGV+I+FKDYS +GI SPWA P+Y + Sbjct: 26 RQARRRFWSFRTLLLMLVPGLLYLAVYKYGPMYGVLIAFKDYSIREGIAGSPWASPFYTH 85 Query: 78 FKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHF 137 F+ F+ SPYF LM+NT+LIS+YKLV G +P II+A+LF+ECR+ W +R QT+SYMPHF Sbjct: 86 FEQFWTSPYFSTLMTNTVLISVYKLVAGTIPPIIVALLFNECRLRWFRRLAQTVSYMPHF 145 Query: 138 LSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGWGAI 197 LSW+I+YG+++A S++TGLVN ++ + G +I FL S WFRS+LV +++WKDIGWGAI Sbjct: 146 LSWVIVYGVTIALLSQSTGLVNGFLRDNFGFTIGFLTSNTWFRSVLVGSDLWKDIGWGAI 205 Query: 198 VYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIY 257 +YLAA+ GID T +EAARVDGA R R IWHITLPGIR V G+I+DAGF+Q+Y Sbjct: 206 IYLAAMIGIDRTFYEAARVDGAGRFRQIWHITLPGIRPVIILLLVLKLGNILDAGFDQVY 265 Query: 258 VFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRWGGGI 317 +FYN +VY GDIIDTWVYR GLE +N+SLA VGLFKS IG VL++ AN++A+RW + Sbjct: 266 IFYNIQVYPTGDIIDTWVYRAGLENLNYSLAAAVGLFKSVIGLVLIVVANRIARRWSAQL 325 Query: 318 W 318 W Sbjct: 326 W 326 >C0UXG0.1 C0UXG0_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 323 Score = 350 bits (899), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 155/290 (53%), Positives = 225/290 (77%), Gaps = 1/290 (0%) Query: 30 LYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKYFKMFFDSPYFLQ 89 LY+M+LP ++++ +F+Y PMYG II+FKDY +GIL SPWA+PWYK+FK F+S YF Sbjct: 34 LYIMVLPGILYFLIFRYGPMYGAIIAFKDYHIQEGILGSPWANPWYKHFKTIFESTYFFN 93 Query: 90 LMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHFLSWIIIYGISVA 149 +++NT+LIS+YKLVFG+ +II+A+L +E R+ W KR +QT++Y+PHFLSW+++YGI+ A Sbjct: 94 ILTNTILISIYKLVFGLPAAIIMALLLNEARITWFKRTIQTVTYLPHFLSWVVVYGIAQA 153 Query: 150 FFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIWKDIGWGAIVYLAAISGIDPT 209 S + GLVN+ + G + + F+ S +WFR+++V+++IWKDIGWGAI++LAA++GI P Sbjct: 154 VLSPSGGLVNKALVALGMNPVDFIASPQWFRTVIVASDIWKDIGWGAIIFLAALTGISPH 213 Query: 210 LFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIYVFYNPRVYEVGD 269 L+EAA VDGASRL+ IW++T+PGI V G++++AGFEQI++FY+P VY VGD Sbjct: 214 LYEAAAVDGASRLQRIWYVTIPGIMPVVVLVALLNIGNLLNAGFEQIFIFYSPSVYSVGD 273 Query: 270 IIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRW-GGGIW 318 IIDTWVYR G+ +S+A VGLFK +GF+L+ G N L+K++ G GIW Sbjct: 274 IIDTWVYRQGIVGFQYSVAAAVGLFKGVVGFILIFGTNWLSKKYTGSGIW 323 >B3K9F8.1 B3K9F8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 306 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 139/287 (48%), Positives = 201/287 (70%), Gaps = 2/287 (0%) Query: 28 RALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSPWADPWYKYFKMFFDSPYF 87 +ALYL++LP +++Y +FKY PMYG+II+F+DYS GIL S + + + F+ +P Sbjct: 15 KALYLLMLPGILYYLIFKYAPMYGIIIAFQDYSIGRGILGSKFVG-LKHFIEFFYVTPDA 73 Query: 88 LQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQTLSYMPHFLSWIIIYGIS 147 +L+ NT+++++Y L+F IILAILFHE + W KR+VQ +SYMPHFLS ++I GI Sbjct: 74 WKLIRNTIMLNVYDLLFHFPAPIILAILFHELKSKWFKRFVQNISYMPHFLSTVVIAGIL 133 Query: 148 VAFFSETTGLVNRWITEAGG-SSISFLGSTEWFRSMLVSTEIWKDIGWGAIVYLAAISGI 206 V F S TTG+VN + + G I FLG EWFR++ V +EIW+ +GWG I+YLAAI+GI Sbjct: 134 VTFLSPTTGVVNHLLVKLFGIEPIMFLGMPEWFRTVYVGSEIWQKVGWGTILYLAAIAGI 193 Query: 207 DPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIMDAGFEQIYVFYNPRVYE 266 DPTL+EAA++DGA+R + + HIT G+ V G+ M+A FE+I + YN YE Sbjct: 194 DPTLYEAAKMDGANRWQQVRHITFIGMVPVMIILFVLSLGNFMEASFEKILLIYNTMNYE 253 Query: 267 VGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKLAKRW 313 D+I+T+VYR G+ +FS AT VGLF+SAIGF+LV+ AN++ +++ Sbjct: 254 TSDVINTFVYRRGILDADFSFATAVGLFQSAIGFILVVAANRIVRKY 300 >B3K6J1.1 B3K6J1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 147/305 (48%), Positives = 198/305 (64%), Gaps = 9/305 (2%) Query: 10 NKTAESPLRQAWIRIWGMRALYLMLLPCLIWYFVFKYLPMYGVIISFKDYSFTDGILHSP 69 NK + LRQ W LYL+++P ++++ VFKYLPM+G++I+FKDYS G S Sbjct: 22 NKKRFANLRQYW-------DLYLIMVPGIVYFLVFKYLPMWGIVIAFKDYSIFAGFNASE 74 Query: 70 WADPWYKYFKMFFDSPYFLQLMSNTLLISLYKLVFGMLPSIILAILFHECRVMWLKRWVQ 129 W +F F F Q+ NT++ISLYKL++G IILA+L +E R M+ KR +Q Sbjct: 75 WVG--LDHFVRLFHDTQFYQVFWNTVIISLYKLIWGFPGPIILALLLNEIRSMFYKRTIQ 132 Query: 130 TLSYMPHFLSWIIIYGISVAFFSETTGLVNRWITEAGGSSISFLGSTEWFRSMLVSTEIW 189 TL+Y+PHFLSWII+ GI V S TG VN + G + FL WFRS+LV ++IW Sbjct: 133 TLAYLPHFLSWIILGGILVNVLSPATGAVNEIMKWLGFEPVFFLADPAWFRSVLVISDIW 192 Query: 190 KDIGWGAIVYLAAISGIDPTLFEAARVDGASRLRMIWHITLPGIRNVXXXXXXXXXGSIM 249 K++GWGAI+YLAA++GID +EAA +DGA + + +WH+TLP I+ GSI+ Sbjct: 193 KEVGWGAIIYLAALAGIDQQQYEAAVMDGAGKWKQLWHVTLPSIKGTIIVLFLLRLGSIL 252 Query: 250 DAGFEQIYVFYNPRVYEVGDIIDTWVYRTGLEQMNFSLATTVGLFKSAIGFVLVLGANKL 309 D GFEQI+V YN VY+V D+I+T+VYR G+ Q FS +T VGL KSAI VLV+ NK Sbjct: 253 DVGFEQIFVLYNSLVYDVADVIETYVYRIGIGQSEFSYSTAVGLLKSAISLVLVVIVNKA 312 Query: 310 AKRWG 314 KR G Sbjct: 313 VKRTG 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.475 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,901,773,209 Number of extensions: 75780100 Number of successful extensions: 255242 Number of sequences better than 1.0e-05: 3159 Number of HSP's gapped: 253318 Number of HSP's successfully gapped: 3160 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)