BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0497.0002.p
         (53 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B2A0I2.1 B2A0I2_NATTJ Putative uncharacterized protein                 91   2e-17
A4FV36.1 A4FV36_BOVIN SPATA20 protein                                  91   3e-17
Q46FU7.1 Q46FU7_METBF Putative uncharacterized protein                 91   4e-17
Q8PZ75.1 Q8PZ75_METMA Conserved protein                                90   5e-17
Q896N6.1 Q896N6_CLOTE Thymidylate kinase EC=2.7.4.9                    90   6e-17

>B2A0I2.1 B2A0I2_NATTJ Putative uncharacterized protein
          Length = 686

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 45/50 (90%)

Query: 4  HKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          H   NRLA EKSPYLLQHAHNPV+WFPWSEEAFE AK+++KP+FLSIGYS
Sbjct: 7  HGTVNRLANEKSPYLLQHAHNPVDWFPWSEEAFEKAKKEDKPIFLSIGYS 56


>A4FV36.1 A4FV36_BOVIN SPATA20 protein
          Length = 789

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/52 (71%), Positives = 46/52 (88%)

Query: 2   TTHKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
           T  KVPNRL  EKSPYLLQHA+NPV+W+PW +EAF+ AK++NKP+FLS+GYS
Sbjct: 60  TPQKVPNRLINEKSPYLLQHAYNPVDWYPWGQEAFDKAKKENKPIFLSVGYS 111


>Q46FU7.1 Q46FU7_METBF Putative uncharacterized protein
          Length = 711

 Score = 90.9 bits (224), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 45/52 (86%)

Query: 2  TTHKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          T HK PNRL  EKSPYLLQHA+NPV W+PW EEAFE A+++NKP+FLSIGYS
Sbjct: 17 TEHKKPNRLINEKSPYLLQHAYNPVKWYPWGEEAFEKARKENKPIFLSIGYS 68


>Q8PZ75.1 Q8PZ75_METMA Conserved protein
          Length = 700

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 45/50 (90%)

Query: 4  HKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
           K PNRL KEKSPYLLQHA+NPV+W+PW EEAFE A+++NKPVFLSIGYS
Sbjct: 8  QKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYS 57


>Q896N6.1 Q896N6_CLOTE Thymidylate kinase EC=2.7.4.9
          Length = 713

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 48/51 (94%)

Query: 3  THKVPNRLAKEKSPYLLQHAHNPVNWFPWSEEAFEIAKRDNKPVFLSIGYS 53
          +++VPNRLA+EKSPYLLQHA+NPV+W+PW EEAF+ AK ++KP+FLSIGYS
Sbjct: 40 SNRVPNRLAQEKSPYLLQHAYNPVDWYPWGEEAFQKAKEEDKPIFLSIGYS 90


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 334,233,291
Number of extensions: 9396770
Number of successful extensions: 25341
Number of sequences better than 1.0e-05: 394
Number of HSP's gapped: 25339
Number of HSP's successfully gapped: 394
Length of query: 53
Length of database: 3,060,696,203
Length adjustment: 26
Effective length of query: 27
Effective length of database: 2,815,749,813
Effective search space: 76025244951
Effective search space used: 76025244951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)