BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0012.p (348 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K996.1 B3K996_9BACI Response regulator receiver 154 2e-35 B3KCS2.1 B3KCS2_9BACI Response regulator receiver 153 2e-35 C0D1T3.1 C0D1T3_9CLOT Putative uncharacterized protein 147 2e-33 C0FJU4.1 C0FJU4_9CLOT Putative uncharacterized protein 145 8e-33 A9KKI7.1 A9KKI7_CLOPH Two component transcriptional regulator, A... 126 4e-27 >B3K996.1 B3K996_9BACI Response regulator receiver Length = 353 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 183/370 (49%), Gaps = 51/370 (13%) Query: 2 KILVVDDEVVIRKGLIKLLEQFSKGITDIDEAKNGEEALTRISVNKPDILITDIQMPIMN 61 +I+++DDE I L KL+E+ I EA++G EAL + ++PDI++TDI MP M+ Sbjct: 3 RIMMIDDEYAIHLSLRKLVERSGLRIEVAGEAEDGVEALEMLENSRPDIIVTDICMPEMD 62 Query: 62 GLDLIGRVRAVYPELDVIVLSGYAEFDFVQQALRHQVADYLLKPVTQEQLNEVISKILLK 121 GL+ I RVR + ++ I+LSG+ F+F +QA+R+ V+D+LLKP+ Q + + Sbjct: 63 GLEFIRRVRESHAQMHFIILSGHDNFEFARQAMRYGVSDFLLKPIDPAQFHATLE----- 117 Query: 122 DPARWTSQMDGETIRTMKTTVTLLVKNVMAEDQQETDKIIE-GWSAHCRKC---GYTWLE 177 R ++D R + T L + Q+ ++ E WSA R+ + + Sbjct: 118 ---RACRELDERKARFSRQTKWTLAQ------QRHKARLAELLWSAEEREALEQTHEIMA 168 Query: 178 LKQMMG-------HFQLLFRSELLLNLKQ--------------ATGDALPVLQQTASSAE 216 L + MG + + SELL L++ A D L +QT + Sbjct: 169 LFETMGPKEVSLSRYAHMLISELLSALEERGLMLNMDTGEEQWAQDDPLACRRQTEDKVK 228 Query: 217 ELFEVWKNYLASVILYVSERRAPRNKRIVEEVLGRIEAQYGDASLNLQGLAESCGLTAPY 276 E+ + K S + KR +EE Y L+LQ +A+S G++ Y Sbjct: 229 EMLALIKGSRN----LGSRHNIQKAKRFIEE-------NYAMEDLSLQEVADSVGMSVTY 277 Query: 277 LSKIFREVMKKPITQYISEYRLEKARELLKYDAPAKINIVAEQCGFSDYPYFSKIFKKNF 336 LS+ F+ +Y+ + R+EKARELL ++ A + GFSDY +FSK FKK Sbjct: 278 LSRTFKSETNMNFVKYLVQVRMEKARELLA-ESELSAQEAAYRVGFSDYVHFSKTFKKFH 336 Query: 337 GVSPLEYKEK 346 G++P Y+++ Sbjct: 337 GLTPSAYRKQ 346 >B3KCS2.1 B3KCS2_9BACI Response regulator receiver Length = 349 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/356 (28%), Positives = 187/356 (52%), Gaps = 20/356 (5%) Query: 2 KILVVDDEVVIRKGLIKLLEQFSKGITDIDEAKNGEEALTRISVNKPDILITDIQMPIMN 61 +ILVVDDE +IR GL KL+ Q + + A NG EAL I +PD + TDI+MP M+ Sbjct: 3 RILVVDDEPMIRMGLAKLITQTDPAMIQAETAGNGMEALEAIQTARPDFIFTDIKMPKMD 62 Query: 62 GLDLIGRVRAVYPELDVIVLSGYAEFDFVQQALRHQVADYLLKPVTQEQLNEVISKIL-- 119 GL+L ++ Y ++ V+V+SGY +F++ Q+ + + V +YLLKPVT+ ++ ++K++ Sbjct: 63 GLELSKQLYETYGDITVVVISGYGDFEYAQKCMSYGVKEYLLKPVTKSVVHNTMNKLMAD 122 Query: 120 ---LKDPARWTSQMDGETIRTMKTTVTLLVKNVMAEDQQETDKIIEGWSAHCRKCGYTWL 176 +++ R+ + + + L V ++ D Q + IE + C + + + Sbjct: 123 RISMQEKQRFYFPLS--KLEDWLEQLELAVWHLQMNDIQMKLQEIEDY---CNERRFESI 177 Query: 177 ELKQMMGHFQLLFRSEL----LLNLKQATGDALPVLQQTASSAEELFEVWKNYLASVILY 232 +L++++ +L + + ++ TG + P FE ++ + + Sbjct: 178 QLQELLDELYAKLIKQLNGRDVYSFERMTGISGPA----PGGNHHYFERFRLAVNQTVKL 233 Query: 233 VSERRAPRNKRIVEEVLGRIEAQYGDASLNLQGLAESCGLTAPYLSKIFREVMKKPITQY 292 + E+R K VEE IE L+L +A+ GL Y S++F+++ + Y Sbjct: 234 IREKRKGNAKEPVEEAKAYIERNLS-RDLSLDEVADMLGLNPSYFSQLFKQMTDETFVHY 292 Query: 293 ISEYRLEKARELLKYDAPAKINIVAEQCGFSDYPYFSKIFKKNFGVSPLEYKEKNG 348 + R+EKA++LL KI ++ + G++D+P+F+K FKK G +P EY+E G Sbjct: 293 RIKKRMEKAKKLLAI-PHYKITDISFEVGYADHPHFTKTFKKVTGYTPSEYREMLG 347 >C0D1T3.1 C0D1T3_9CLOT Putative uncharacterized protein Length = 361 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/371 (28%), Positives = 188/371 (50%), Gaps = 38/371 (10%) Query: 1 MKILVVDDEVVIRKGLIKLLEQFSKGITDIDEAKNGEEALTRISVNKPDILITDIQMPIM 60 ++ +V DDE +IR+G+ + ++ GI + AKNGEEAL + + D+L+TDI+MP + Sbjct: 2 IRAVVADDEKIIREGIAEWVDWNKLGICLVGCAKNGEEALAAVREQQADLLVTDIRMPGI 61 Query: 61 NGLDLIGRV-RAVYPELDVIVLSGYAEFDFVQQALRHQ-VADYLLKPVTQEQLNEVISKI 118 +GL+L ++ R P L +I++SGY++F + Q+A++ + V DY+LKP+ EQL V++K Sbjct: 62 SGLELAEQLEREEKPPL-IILISGYSDFAYAQKAVKLKCVVDYVLKPLELEQLEAVLAKT 120 Query: 119 ----------LLKDPARWTSQMDGETIRTMKTTVTLLVKNVMAEDQQET----------- 157 +L P T + G R M LV+ + A +++ET Sbjct: 121 GQQILKRRHSILVPPVERTEESAGTGAR-MAGMTARLVRFISAGEEKETAERLGEIGLFW 179 Query: 158 --DKIIEGWSAHCRKCGYTWLELKQMMGHFQLLFRSELLLNLKQATGDALPVLQQTASSA 215 ++ + W R+C + L+ ++ + L + P + A Sbjct: 180 EEGRVSQAW--RVRQCCEILVSLEGILAGYN--------RKLGELCETGHPAEKVKALPP 229 Query: 216 EELFEVWKNYLASVILYVSERRAPRNKRIVEEVLGRIEAQYGDASLNLQGLAESCGLTAP 275 E+L + + + + E R +++ L I+ Y + LQ LAE+ ++ Sbjct: 230 EQLLPFMERAVMGCVRLIGETRNRSCSALIKSALEEIDRNYFRSEFTLQTLAETLMVSPN 289 Query: 276 YLSKIFREVMKKPITQYISEYRLEKARELLKYDAPAKINIVAEQCGFSDYPYFSKIFKKN 335 YLS F+E ++++E R+E+A+ LL D KI VA QCG D YF+++FK+ Sbjct: 290 YLSARFKEETGTGFVRFLNEKRMERAKGLLA-DVSRKIYEVACQCGIEDVRYFTRLFKEY 348 Query: 336 FGVSPLEYKEK 346 G++P EY++K Sbjct: 349 AGMTPKEYRDK 359 >C0FJU4.1 C0FJU4_9CLOT Putative uncharacterized protein Length = 369 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 188/368 (51%), Gaps = 30/368 (8%) Query: 1 MKILVVDDEVVIRKGLIKLLEQFSKGITDIDEAKNGEEALTRISVNKPDILITDIQMPIM 60 +K+ +V+DE +IRKG+ ++ + G + E +GE A I +PDIL+TD++MP M Sbjct: 2 IKVFLVEDEPIIRKGIRDNIDWAANGFQFVGEGGDGEYAYPLILEMEPDILVTDVKMPFM 61 Query: 61 NGLDLIGRVRAVYPELDVIVLSGYAEFDFVQQALRHQVADYLLKPVTQEQLNEVISKI-- 118 +GL+L V+ P++ +++LSGY EFD+ ++A++ ++DY+LKPVT L E + ++ Sbjct: 62 DGLELSRLVKKALPDIKIVILSGYNEFDYAKEAIKMGISDYILKPVTSAALVEALKRVAD 121 Query: 119 --------------LLKDPARWTSQMDGETIRTMKTTVTLLVKNVMAEDQQETDKIIEGW 164 ++T +D R + + + + D+ ET +E + Sbjct: 122 TIREEREREKLLERYFASYKKYTEFLDQTDYRGVDRRLIEEFLKLGSVDECET--FVEEY 179 Query: 165 SAHCRKCGYTWLELKQMMGHFQLLFRSELLLNL--KQATGDALPVLQQTASSAEELFEVW 222 A + Y L L+Q M E + NL ++ ++ +++ + E+ E Sbjct: 180 FAAVGENNYKSLLLRQYMVVDIFYCVQEFVRNLGIEEELPESFRDIKRIPQAITEV-EKT 238 Query: 223 KNYLASVI---LYVSER-RAPRNKRIVEEVLGRIEAQY--GDASLNLQGLAESCGLTAPY 276 K+YL + L V +R + R +++ E I+ + GD SLNL +A G++ Y Sbjct: 239 KHYLVGLFGCALEVRDRVSSDRYGQVIREAKSFIKENFSRGDFSLNL--VAAHIGVSPSY 296 Query: 277 LSKIFREVMKKPITQYISEYRLEKARELLKYDAPAKINIVAEQCGFSDYPYFSKIFKKNF 336 S IFR+ + +Y++ R++ A E+LK + + E+ G++D YFS FKK Sbjct: 297 FSSIFRQETGQTFVEYLTRVRIDSACEMLKC-TNLRTAEIGERAGYNDPHYFSSAFKKVM 355 Query: 337 GVSPLEYK 344 G+SP EYK Sbjct: 356 GMSPKEYK 363 >A9KKI7.1 A9KKI7_CLOPH Two component transcriptional regulator, AraC family Length = 355 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 180/355 (50%), Gaps = 28/355 (7%) Query: 3 ILVVDDEVVIRKGLIKLLEQFSKGITDIDEAKNGEEALTRISVNKPDILITDIQMPIMNG 62 IL+VDDE + KG ++E+ I + EAK+G EA T + D++ITDI+MP M+G Sbjct: 4 ILLVDDEPLALKGNRIIIERSGLDINRLYEAKDGVEAWTLLQKQPVDLVITDIKMPGMDG 63 Query: 63 LDLIGRVRAVYPELDVIVLSGYAEFDFVQQALRHQVADYLLKPVTQEQLNEVISKILLKD 122 + L ++ I++SGY+EF + ++A+R+ V DY+LKPV E+L + IS +L ++ Sbjct: 64 VTLCQKIFETGMVAKTIIVSGYSEFQYAKEAIRYSVKDYILKPVHSEELIQSISSVLYRN 123 Query: 123 PARWT----SQMDGETIRTMKTTVTLLVKNVMAEDQQETDKIIEGWSAHC-----RKCGY 173 + + D R ++ + LL + + +++ +K ++ + A ++C Sbjct: 124 QPQLEELDLEKHDSIPHRELENILVLLQQGLWMGQEKDVEKGMKLYRAAMEQVKDKRC-- 181 Query: 174 TWLELKQMMGHFQLLFRSELLLNLKQATGDALPVLQQTASSAEELFEVWKNYLASVILYV 233 L + + +F L +L L TG + V + SAE E N A+ I + Sbjct: 182 --LPVSE---NFCCLLAEKLSLK----TGCLIDVEPNFSMSAER--EEILNETATFITQL 230 Query: 234 -SERRAPRNKRIVEEVLGRIEAQYGDASLN----LQGLAESCGLTAPYLSKIFREVMKKP 288 S+ R+ +VL + +Y + N L LA G + Y S+IF+E M K Sbjct: 231 RSDLLHKRSHTDYTDVLMGMAKKYLEEHYNQDIMLTDLAARTGFSTNYFSQIFKEKMGKT 290 Query: 289 ITQYISEYRLEKARELLKYDAPAKINIVAEQCGFSDYPYFSKIFKKNFGVSPLEY 343 Q+ +E R+ KA ELL + I +A + G++D YF ++FK+ G +P EY Sbjct: 291 FAQFRTEIRIHKAMELLNWSG-KNITDIAMEVGYNDSTYFIRVFKEITGQTPSEY 344 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,946,670,325 Number of extensions: 74957799 Number of successful extensions: 333323 Number of sequences better than 1.0e-05: 14387 Number of HSP's gapped: 349224 Number of HSP's successfully gapped: 14978 Length of query: 348 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 212 Effective length of database: 1,779,438,163 Effective search space: 377240890556 Effective search space used: 377240890556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)