BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0009.p (274 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5ESH7.1 C5ESH7_9FIRM Transport protein 306 2e-81 C0CRG0.1 C0CRG0_9FIRM Putative uncharacterized protein 219 3e-55 C3KM83.1 C3KM83_RHISN Putative transmembrane component of ABC tr... 218 4e-55 Q28JV7.1 Q28JV7_JANSC Binding-protein-dependent transport system... 216 2e-54 A9BJA4.1 A9BJA4_PETMO Binding-protein-dependent transport system... 213 1e-53 >C5ESH7.1 C5ESH7_9FIRM Transport protein Length = 278 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 155/271 (57%), Positives = 203/271 (74%) Query: 4 NGHKKLSVVTAIILLLVCIASVFPLFWMFIISLKTKTETYNPAIWFFTPTFENYKSIFEN 63 N L + II +VC+ + P WM +ISLK + + ++P + F PT ENY SI +N Sbjct: 7 NKRAFLGIGKGIIFFIVCLFFIAPYLWMVLISLKPRVDIFDPGKFIFQPTLENYASIIKN 66 Query: 64 RNAINYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPPMASVI 123 + ++Y NS++V V++T+ S+ IG AAYGFARF +KK+EN AF VLS RMLP MA VI Sbjct: 67 AHILDYFANSAVVSVVSTIVSLVIGSFAAYGFARFNWKKRENTAFLVLSQRMLPAMAIVI 126 Query: 124 PIFVMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRFQVF 183 P F+MA LLDT V+LI+ Y+LFNIPFTI MMR FFE+IP+ +EEA +DG + QVF Sbjct: 127 PYFLMAMAARLLDTRVILIICYLLFNIPFTILMMRGFFEDIPMEIEEAGKIDGCNGLQVF 186 Query: 184 IQVILPLALPGLIATSIFCIINSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVVWGEMS 243 ++ILPL+LPGL AT+IFC+INSWNEFVFA FLTS +A T+PT+V LFLSVSG WGEM+ Sbjct: 187 KELILPLSLPGLTATAIFCLINSWNEFVFANFLTSVNAKTVPTSVMLFLSVSGTKWGEMA 246 Query: 244 AIGIVTIMPVLIFAMVVQKYMIRGLTFGGVK 274 A G+++ +PV++F ++VQKYMIRGLTFG VK Sbjct: 247 ATGVLSSLPVILFGIIVQKYMIRGLTFGAVK 277 >C0CRG0.1 C0CRG0_9FIRM Putative uncharacterized protein Length = 274 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 106/268 (39%), Positives = 181/268 (67%), Gaps = 1/268 (0%) Query: 8 KLSVVTAIILLLVCIASVFPLFWMFIISLKTKTETYN-PAIWFFTPTFENYKSIFENRNA 66 + ++V +IL++ + ++ P FW+ + S KT+ +++ P FF+ T +NYK+ F ++ Sbjct: 7 RKNIVLYVILIIFLVITLLPYFWLVLTSFKTRVDSFAIPPKIFFSATLDNYKAAFLDKGF 66 Query: 67 INYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPPMASVIPIF 126 + LKNS I+++ T + +G +++ F+RF+ +K + ++L R P + +P++ Sbjct: 67 LMNLKNSIIIMLFTVGIGLALGLPSSFAFSRFKTRKDQVLLNYLLGTRFTPVVVLALPLY 126 Query: 127 VMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRFQVFIQV 186 ++ S +G+L+++V +IV+++ FN+PF IWMM+ FF+ IP ++EAA V+G S F+VF+++ Sbjct: 127 LLMSKIGMLNSYVGIIVAHVAFNLPFVIWMMKGFFDAIPKEIDEAARVEGYSWFKVFLKI 186 Query: 187 ILPLALPGLIATSIFCIINSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVVWGEMSAIG 246 +PL GL AT++FC INSWNEF+ AL LT D T+P V L+ G +WG++SA+G Sbjct: 187 DIPLVKSGLAATAVFCAINSWNEFLMALILTGRDTVTMPVGVPGLLTPQGTIWGQVSAVG 246 Query: 247 IVTIMPVLIFAMVVQKYMIRGLTFGGVK 274 V +PVLIFA++VQK+MI G+T G VK Sbjct: 247 TVITIPVLIFAILVQKHMIAGMTMGAVK 274 >C3KM83.1 C3KM83_RHISN Putative transmembrane component of ABC transporter Length = 286 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 112/272 (41%), Positives = 177/272 (65%), Gaps = 7/272 (2%) Query: 8 KLSVVTAIILLLVCIASVFPLFWMFIISLKTKTETYN-PAIWF-FTPTFENYKSIFENRN 65 +LS AI++ L I ++FP++W+ S K + + P W PT ++Y F R Sbjct: 16 RLSAYLAILVAL--ILTLFPVYWIAANSFKFDIDIFAVPPEWVPRNPTLKHYDEAFIQRP 73 Query: 66 AINYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEF--KKKENRAFWVLSLRMLPPMASVI 123 + Y NS +V + TT+ S+ G +A Y ARF + + ++ +FW+LS RM+PP+ S+I Sbjct: 74 FLQYALNSFLVAIGTTVISVTFGTMAGYALARFSYPWQWRKQISFWILSTRMMPPIVSII 133 Query: 124 PIFVMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRFQVF 183 P+++ ++ +L+T LI++Y FN+PF WMM+S+F+++PV LEEAA VDG +R+ F Sbjct: 134 PLYLFFNYFDMLNTKSALIIAYTAFNLPFATWMMKSYFQDLPVELEEAAVVDGDTRWGAF 193 Query: 184 IQVILPLALPGLIATSIFCIINSWNEFVFALFLTSSDAS-TLPTTVTLFLSVSGVVWGEM 242 + V LPLA PGL AT+IFC+I SWNEF+ +L +T ++ S TLP + ++ WGE+ Sbjct: 194 LHVALPLARPGLAATAIFCLIISWNEFLLSLVITLTEQSQTLPIGIAGRVTQYNTYWGEI 253 Query: 243 SAIGIVTIMPVLIFAMVVQKYMIRGLTFGGVK 274 SA G + +P++IFA +VQK+++RGL+ G VK Sbjct: 254 SAAGFMACVPIVIFAFIVQKHLVRGLSLGAVK 285 >Q28JV7.1 Q28JV7_JANSC Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 113/276 (40%), Positives = 174/276 (63%), Gaps = 5/276 (1%) Query: 3 LNGHKKLSVVTAIILLLVCIAS---VFPLFWMFIISLKTKTETYNPAIWFFTPTFENYKS 59 + G +K + AI +L+ +A+ + P+ W+F+ S K+ E Y + FFTPT ENY + Sbjct: 1 MTGKQKKQMWRAIQSVLIVLAAFIMLVPIIWIFLASFKSHVEVYQLRL-FFTPTLENYGT 59 Query: 60 IFEN-RNAINYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPP 118 +FE N L NS+IV +T +F+I I +AAY F+RF K + +L+ + +P Sbjct: 60 VFEEPYNLGAKLFNSTIVAFITVIFAIPIATMAAYSFSRFRLKFETTILVVILATQFVPA 119 Query: 119 MASVIPIFVMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGAS 178 + ++P F+M +GLLDT + LI+ + +PF IWM++ F + IP+ EEAA VDG+S Sbjct: 120 VVIILPFFIMFRDIGLLDTRIGLILVNLAIVMPFAIWMIKGFIDSIPMDTEEAAMVDGSS 179 Query: 179 RFQVFIQVILPLALPGLIATSIFCIINSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVV 238 R QV ++LP+A PGL+ SIFC I +WNEF+FALFLT+ DA TLP + LF G + Sbjct: 180 RLQVIKNIVLPMAAPGLVTASIFCFILAWNEFLFALFLTNRDAVTLPIGLALFRGEEGDL 239 Query: 239 WGEMSAIGIVTIMPVLIFAMVVQKYMIRGLTFGGVK 274 W +SA GI+ + P+ + A+ ++KY ++G+T G V+ Sbjct: 240 WNLLSAAGIIIMAPMFVLALAIRKYFVQGMTMGAVR 275 >A9BJA4.1 A9BJA4_PETMO Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 110/274 (40%), Positives = 171/274 (62%), Gaps = 2/274 (0%) Query: 3 LNGHKKLSVVTAIILLLVCIASVFPLFWMFIISLKTKTETYN-PAIWFFTP-TFENYKSI 60 ++ K + V++ I+++ I +++PL W+ S KT + + P W T NYK Sbjct: 1 MSKSKIIKVLSLTIVVIALIWTLYPLMWILFSSFKTPIDQFTIPPKWIPENFTLRNYKIF 60 Query: 61 FENRNAINYLKNSSIVVVLTTLFSIFIGGLAAYGFARFEFKKKENRAFWVLSLRMLPPMA 120 F N + NS IV +T+ ++ +G AAYG ARF++K +F +L RM PP+ Sbjct: 61 FSNTEFVRAFFNSIIVTASSTILALILGIPAAYGLARFKWKHASLLSFIILLARMTPPIV 120 Query: 121 SVIPIFVMASFLGLLDTHVVLIVSYMLFNIPFTIWMMRSFFEEIPVALEEAAFVDGASRF 180 V+P F+++ L L T++ +I++ F++PF +WMM+ FF EIP +LEEAA +DG +RF Sbjct: 121 MVLPFFLISRILNLSGTYIPIIIASSFFSVPFAVWMMQGFFSEIPESLEEAAMIDGCTRF 180 Query: 181 QVFIQVILPLALPGLIATSIFCIINSWNEFVFALFLTSSDASTLPTTVTLFLSVSGVVWG 240 + +++LPL LPG+ ATSI C + SWNEF+FAL LT + TLP V +F+S V WG Sbjct: 181 ESLRKIVLPLVLPGISATSILCALVSWNEFLFALILTGQETRTLPVLVNMFVSEKNVDWG 240 Query: 241 EMSAIGIVTIMPVLIFAMVVQKYMIRGLTFGGVK 274 MSA ++T++P++IF ++VQ ++RGLT G K Sbjct: 241 VMSAAALITVIPMIIFGLLVQNNLVRGLTAGSGK 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.142 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,511,554,209 Number of extensions: 57643041 Number of successful extensions: 268046 Number of sequences better than 1.0e-05: 8577 Number of HSP's gapped: 258027 Number of HSP's successfully gapped: 8611 Length of query: 274 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 140 Effective length of database: 1,798,280,193 Effective search space: 251759227020 Effective search space used: 251759227020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)