BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0007.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8F4.1 B3K8F4_9BACI Phosphatidate cytidylyltransferase 496 e-139 B9R0J2.1 B9R0J2_9RHOB Phosphatidate cytidylyltransferase EC=2.7.... 245 4e-63 Q9KQR2.1 Q9KQR2_VIBCH Phosphatidate cytidylyltransferase EC=2.7.... 244 9e-63 C3LNP0.1 C3LNP0_VIBCM Putative phosphatidate cytidylyltransferas... 244 9e-63 C3NP84.1 C3NP84_VIBCH Phosphatidate cytidylyltransferase EC=2.7.... 244 9e-63 >B3K8F4.1 B3K8F4_9BACI Phosphatidate cytidylyltransferase Length = 304 Score = 496 bits (1278), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/281 (83%), Positives = 262/281 (93%) Query: 2 LVSRLQKDKDYTGIGFRIKTWWGMVFIFCLATLFNPVVSLLSLMVLAFFALKEYFSMIRT 61 ++S+ Q + DYT +GFRIKTWWGM+ IFCLATL NPVVSLLSLMVL FF LKEYFSMI+T Sbjct: 24 VMSKTQPNIDYTEVGFRIKTWWGMLVIFCLATLLNPVVSLLSLMVLTFFTLKEYFSMIKT 83 Query: 62 RKADRRLFLWAYLSIPLQFYWIYIEWYGMFIVFIPVYVFLLLPLPRLINKGTLGFLRSVS 121 RKADRRLFLWAYL+IP+QFYWIYIEWYGMFIVFIP+YVFL+LPLPRLINKGT+GF+RSVS Sbjct: 84 RKADRRLFLWAYLTIPVQFYWIYIEWYGMFIVFIPIYVFLVLPLPRLINKGTVGFMRSVS 143 Query: 122 ATQWGLMLMVFGLSHLAYFQFATPEYGAGLVLFLVVLTQLNDAVHYLASIYFGKRKVVPT 181 +TQWGLMLMVFGLSHLAYFQFATP+YGAGLVLFLVVLTQLND VH +AS+YFGKR++VPT Sbjct: 144 STQWGLMLMVFGLSHLAYFQFATPQYGAGLVLFLVVLTQLNDVVHTIASLYFGKRRIVPT 203 Query: 182 ANPNLTWEGFACAFAVTTGVSYLIYPYLTPLTPVFGFFSGVLISLAGFFGSLTVSVLKRD 241 +NPNLTWEGFACAF VTTG SYLIYPYLTPL+P FG SG+LISLAGFFGSLTVSVLKRD Sbjct: 204 SNPNLTWEGFACAFLVTTGCSYLIYPYLTPLSPTFGLLSGMLISLAGFFGSLTVSVLKRD 263 Query: 242 LLIGDDDKFAALQKSYLSRVDSLAYTSPVFFHVIRYFFDFM 282 LLIGDD +F AL+KSYLSRVDSL YTSP+FFH IRYF+DFM Sbjct: 264 LLIGDDGRFDALKKSYLSRVDSLTYTSPIFFHFIRYFYDFM 304 >B9R0J2.1 B9R0J2_9RHOB Phosphatidate cytidylyltransferase EC=2.7.7.41 Length = 308 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/278 (45%), Positives = 176/278 (63%), Gaps = 5/278 (1%) Query: 7 QKDKDYTGIGFRIKTWWGMVFIFCLATLFNPVVSLLSLMVLAFFALKEYFSMIRTRKADR 66 + +K+ + + R ++WW MV IF +A L + +S++ +++F ALKEYFSMI TR+ADR Sbjct: 30 RSEKNLSELVQRTQSWWVMVAIFTVAFLVSNTISIIVFALISFLALKEYFSMIPTRRADR 89 Query: 67 RLFLWAYLSIPLQFYWIYIEWYGMFIVFIPVYVFLLLPLPRLINKGTLGFLRSVSATQWG 126 R+ WAYLSIP+Q++W+Y +YGMF VFIPVY+FL LP L+++ T GFL+SV WG Sbjct: 90 RVLFWAYLSIPVQYFWVYDSYYGMFAVFIPVYMFLFLPFASLLSQQTEGFLKSVGTLNWG 149 Query: 127 LMLMVFGLSHLAYFQF-----ATPEYGAGLVLFLVVLTQLNDAVHYLASIYFGKRKVVPT 181 LML VF +SH A+ GAGL+LFLV LTQ ND Y FG+RK++P Sbjct: 150 LMLCVFSISHAAFLLILPTIENNSAGGAGLLLFLVFLTQFNDVAQYTWGKLFGRRKIIPG 209 Query: 182 ANPNLTWEGFACAFAVTTGVSYLIYPYLTPLTPVFGFFSGVLISLAGFFGSLTVSVLKRD 241 +PN TWEGF T ++ + P +TP + +G+LI +AGF G +TVS LKRD Sbjct: 210 VSPNKTWEGFLGGVGTTFVLAIVTAPLVTPFSLAHAAAAGLLIPVAGFIGDVTVSALKRD 269 Query: 242 LLIGDDDKFAALQKSYLSRVDSLAYTSPVFFHVIRYFF 279 L + D L R+DSL +T+P+FFH RYF+ Sbjct: 270 LGVKDTGSLIPGHGGILDRIDSLTFTAPLFFHFTRYFY 307 >Q9KQR2.1 Q9KQR2_VIBCH Phosphatidate cytidylyltransferase EC=2.7.7.41 Length = 310 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 127/275 (46%), Positives = 170/275 (61%), Gaps = 4/275 (1%) Query: 3 VSRLQKDKDYTGIGFRIKTWWGMVFIFCLATLFNPVVSLLSLMVLAFFALKEYFSMIRTR 62 +SR ++DY + RI++WW MV I + +L + L+F ALKE+ S++ TR Sbjct: 29 LSRRYPERDYLELKLRIRSWWWMVAIVFVVLQLPLNYTLFFVGFLSFMALKEFLSIVPTR 88 Query: 63 KADRRLFLWAYLSIPLQFYWIYIEWYGMFIVFIPVYVFLLLPLPRLINKGTLGFLRSVSA 122 DRR+ WAYLSIP Q+YW+ I WYGMFI+FIPVYVFL LP+ ++ T GF+RS Sbjct: 89 MTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIFIPVYVFLYLPMVMVLIGDTKGFIRSAGI 148 Query: 123 TQWGLMLMVFGLSHLAYFQF---ATPEYGA-GLVLFLVVLTQLNDAVHYLASIYFGKRKV 178 W +ML VF +SH+AY P+ G+ G++LFL+V+TQ ND Y+ FGK K+ Sbjct: 149 IHWAMMLTVFCISHMAYLLVLPSLNPDAGSLGMLLFLLVMTQFNDVAQYVWGKSFGKHKI 208 Query: 179 VPTANPNLTWEGFACAFAVTTGVSYLIYPYLTPLTPVFGFFSGVLISLAGFFGSLTVSVL 238 VP +PN TW+GF VSY PYLTPLT G GV+I+L+GF G L +S + Sbjct: 209 VPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLTPLTAAQGLVGGVIIALSGFIGDLVISSV 268 Query: 239 KRDLLIGDDDKFAALQKSYLSRVDSLAYTSPVFFH 273 KRDL I D +F L RVDSL +T+P+FFH Sbjct: 269 KRDLRIKDTSQFIPGHGGILDRVDSLMFTAPLFFH 303 >C3LNP0.1 C3LNP0_VIBCM Putative phosphatidate cytidylyltransferase EC=2.7.7.41 Length = 310 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 127/275 (46%), Positives = 170/275 (61%), Gaps = 4/275 (1%) Query: 3 VSRLQKDKDYTGIGFRIKTWWGMVFIFCLATLFNPVVSLLSLMVLAFFALKEYFSMIRTR 62 +SR ++DY + RI++WW MV I + +L + L+F ALKE+ S++ TR Sbjct: 29 LSRRYPERDYLELKLRIRSWWWMVAIVFVVLQLPLNYTLFFVGFLSFMALKEFLSIVPTR 88 Query: 63 KADRRLFLWAYLSIPLQFYWIYIEWYGMFIVFIPVYVFLLLPLPRLINKGTLGFLRSVSA 122 DRR+ WAYLSIP Q+YW+ I WYGMFI+FIPVYVFL LP+ ++ T GF+RS Sbjct: 89 MTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIFIPVYVFLYLPMVMVLIGDTKGFIRSAGI 148 Query: 123 TQWGLMLMVFGLSHLAYFQF---ATPEYGA-GLVLFLVVLTQLNDAVHYLASIYFGKRKV 178 W +ML VF +SH+AY P+ G+ G++LFL+V+TQ ND Y+ FGK K+ Sbjct: 149 IHWAMMLTVFCISHMAYLLVLPSLNPDAGSLGMLLFLLVMTQFNDVAQYVWGKSFGKHKI 208 Query: 179 VPTANPNLTWEGFACAFAVTTGVSYLIYPYLTPLTPVFGFFSGVLISLAGFFGSLTVSVL 238 VP +PN TW+GF VSY PYLTPLT G GV+I+L+GF G L +S + Sbjct: 209 VPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLTPLTAAQGLVGGVIIALSGFIGDLVISSV 268 Query: 239 KRDLLIGDDDKFAALQKSYLSRVDSLAYTSPVFFH 273 KRDL I D +F L RVDSL +T+P+FFH Sbjct: 269 KRDLRIKDTSQFIPGHGGILDRVDSLMFTAPLFFH 303 >C3NP84.1 C3NP84_VIBCH Phosphatidate cytidylyltransferase EC=2.7.7.41 Length = 310 Score = 244 bits (622), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 127/275 (46%), Positives = 170/275 (61%), Gaps = 4/275 (1%) Query: 3 VSRLQKDKDYTGIGFRIKTWWGMVFIFCLATLFNPVVSLLSLMVLAFFALKEYFSMIRTR 62 +SR ++DY + RI++WW MV I + +L + L+F ALKE+ S++ TR Sbjct: 29 LSRRYPERDYLELKLRIRSWWWMVAIVFVVLQLPLNYTLFFVGFLSFMALKEFLSIVPTR 88 Query: 63 KADRRLFLWAYLSIPLQFYWIYIEWYGMFIVFIPVYVFLLLPLPRLINKGTLGFLRSVSA 122 DRR+ WAYLSIP Q+YW+ I WYGMFI+FIPVYVFL LP+ ++ T GF+RS Sbjct: 89 MTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIFIPVYVFLYLPMVMVLIGDTKGFIRSAGI 148 Query: 123 TQWGLMLMVFGLSHLAYFQF---ATPEYGA-GLVLFLVVLTQLNDAVHYLASIYFGKRKV 178 W +ML VF +SH+AY P+ G+ G++LFL+V+TQ ND Y+ FGK K+ Sbjct: 149 IHWAMMLTVFCISHMAYLLVLPSLNPDAGSLGMLLFLLVMTQFNDVAQYVWGKSFGKHKI 208 Query: 179 VPTANPNLTWEGFACAFAVTTGVSYLIYPYLTPLTPVFGFFSGVLISLAGFFGSLTVSVL 238 VP +PN TW+GF VSY PYLTPLT G GV+I+L+GF G L +S + Sbjct: 209 VPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLTPLTAAQGLVGGVIIALSGFIGDLVISSV 268 Query: 239 KRDLLIGDDDKFAALQKSYLSRVDSLAYTSPVFFH 273 KRDL I D +F L RVDSL +T+P+FFH Sbjct: 269 KRDLRIKDTSQFIPGHGGILDRVDSLMFTAPLFFH 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.147 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,671,391,917 Number of extensions: 69516950 Number of successful extensions: 310111 Number of sequences better than 1.0e-05: 679 Number of HSP's gapped: 309973 Number of HSP's successfully gapped: 679 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 130 (54.7 bits)