BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0002.p (280 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4EE98.1 C4EE98_STRRS Putative uncharacterized protein 375 e-102 C0ZN78.1 C0ZN78_RHOE4 Putative uncharacterized protein 336 1e-90 C3AY91.1 C3AY91_BACMY Putative uncharacterized protein 273 1e-71 C3I7U3.1 C3I7U3_BACTU Putative uncharacterized protein 270 9e-71 C2XIC9.1 C2XIC9_BACCE Putative uncharacterized protein 270 9e-71 >C4EE98.1 C4EE98_STRRS Putative uncharacterized protein Length = 291 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/275 (66%), Positives = 224/275 (81%), Gaps = 2/275 (0%) Query: 1 MHDASWIEVEIQGEGPCLLLPVNPRPIDGPQADEMMKWGVDPALGRSLIDQLSSSCRVIA 60 +HD S +EVE+ G GP +LLPVNPRP++GPQA+ M KWG DPALGRSLI+ LS + +V+A Sbjct: 9 LHDGSTVEVEVHGAGPTVLLPVNPRPVEGPQAEAMRKWGADPALGRSLIEGLSDAFQVVA 68 Query: 61 FDYEGHVQSCAKPDTLTPDNLSSDFLAIADATSAQQFAYYGYSWLALSGMQLALRTDRLS 120 FDYEGHV KPDTLTP N+++D LA+ADA A +FAYYGYSWLALSG+QLA+RTDRLS Sbjct: 69 FDYEGHVLGAPKPDTLTPANVAADLLAVADAVGADRFAYYGYSWLALSGLQLAIRTDRLS 128 Query: 121 ALVMGGFPPVSGPYKEMLKVTMAAYHLSVSAQKNPDPSPATWDENADEFDWSQAEVTMSE 180 ALVMGGFPP+ GPY EML+VT A + ++VS Q +P +P T E ++E DWS EV+MSE Sbjct: 129 ALVMGGFPPIGGPYAEMLRVTTATHEMAVSPQ-SPPTTPQT-SETSEEPDWSSVEVSMSE 186 Query: 181 AQTKQFVTLYQALQAFNDRTAQERITCPRLCFAGSADLIEYGERWGAVRVDIAGPLIRER 240 AQT+QF+TLYQALQ F+D AQ RI+CPRLCF GSAD IEYGERWG V V +AGP++ R Sbjct: 187 AQTRQFLTLYQALQGFDDLAAQARISCPRLCFVGSADEIEYGERWGDVHVSMAGPIVSRR 246 Query: 241 SALEALGWDVAVLEGLDHTQAMQPAHVLPLLKPWL 275 + L+ALGWD VL+GLDHTQAMQ AHVLP+++PWL Sbjct: 247 AELDALGWDARVLDGLDHTQAMQAAHVLPVMRPWL 281 >C0ZN78.1 C0ZN78_RHOE4 Putative uncharacterized protein Length = 279 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 159/277 (57%), Positives = 206/277 (74%), Gaps = 9/277 (3%) Query: 1 MHDASWIEVEIQGEGPCLLLPVNPRPIDGPQADEMMKWGVDPALGRSLIDQLSSSCRVIA 60 +HD + I+ E+ G GP +L+PVNP G +ADE+ WGVDP+LGR+ ++ L+S+ V+A Sbjct: 6 LHDGTTIDAEVLGHGPAVLMPVNPISATGIKADELRAWGVDPSLGRTFMEGLASNFTVVA 65 Query: 61 FDYEGHVQSCAKPDTLTPDNLSSDFLAIADATSAQQFAYYGYSWLALSGMQLALRTDRLS 120 FDYEGH + PDTLTPDN++SD LA+A++ QFAYYGYSWLAL G+QLALRTDRL+ Sbjct: 66 FDYEGHRMASPAPDTLTPDNITSDILAVANSAGIDQFAYYGYSWLALCGLQLALRTDRLT 125 Query: 121 ALVMGGFPPVSGPYKEMLKVTMAAYHL-SVSAQKNPDPSPATWDENADEFDWSQAEVTMS 179 ALVMGGFPPV GPYK ML+VT A + + S Q+ P+ ++DEFDW+ ++ ++ Sbjct: 126 ALVMGGFPPVDGPYKAMLQVTEATHRMTSEPPQRTSQPT-----ASSDEFDWNSIDIALT 180 Query: 180 EAQTKQFVTLYQALQAFNDRTAQERITCPRLCFAGSADLIEYGERWGAVRVDIAGPLIRE 239 AQT+QFVTLY+AL F+DRT Q RI CPR+CF GS D+IEYG+RWG VRV P + Sbjct: 181 GAQTRQFVTLYRALGEFDDRTIQGRILCPRMCFVGSQDVIEYGDRWGGVRV---APADLD 237 Query: 240 RSALEALGWDVAVLEGLDHTQAMQPAHVLPLLKPWLD 276 A + GWD+ VL+GLDHTQAMQPAHVLP+LKPWL+ Sbjct: 238 LDAARSAGWDIEVLDGLDHTQAMQPAHVLPILKPWLE 274 >C3AY91.1 C3AY91_BACMY Putative uncharacterized protein Length = 307 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 121/264 (45%), Positives = 173/264 (65%), Gaps = 2/264 (0%) Query: 17 CLLLPVNPRPIDGPQADEMMKWGVDPALGRSLIDQLSSSCRVIAFDYEGHVQSCAKPDTL 76 ++LPV + G +A+ + WG+DP G+ ++ L + +V+ FDYEGH P+ L Sbjct: 39 TIMLPVAKESVFGEEAENLKLWGIDPEFGKHFVEGLQNKFQVLYFDYEGHRLKHPNPENL 98 Query: 77 TPDNLSSDFLAIADATSAQQFAYYGYSWLALSGMQLALRTDRLSALVMGGFPPVSGPYKE 136 T +N+ D L IA+ + ++F+YYGYSWLAL G+QLA+RT+RL +L+MGGFPP+ GPYKE Sbjct: 99 TSENIVKDLLLIANEMNVKKFSYYGYSWLALVGLQLAIRTNRLESLIMGGFPPMDGPYKE 158 Query: 137 MLKVTMAAYHLSVSAQKNPDPSPATWDENADEFDWSQAEVTMSEAQTKQFVTLYQALQAF 196 ML VT Y + + Q +P + ++ ++ DW +V ++ QTKQFVTLY+ L+ F Sbjct: 159 MLIVTNKTYEQARNNQNSPTFNEQDKTKSPEKIDWDNIKVKINTNQTKQFVTLYKNLKEF 218 Query: 197 NDRTAQERITCPRLCFAGSADLIEYGERWGAVRVDIAGPLIRERSALEALGWDVAVL--E 254 +DR Q ++ PRL F G D I YGE +G+V VDI G + + + LE LGWDV +L E Sbjct: 219 DDREIQHKLAIPRLAFVGEKDTIIYGENFGSVTVDIGGTIQKNKQVLENLGWDVEILEGE 278 Query: 255 GLDHTQAMQPAHVLPLLKPWLDAN 278 G+DHT+AMQP VL L+KPWL N Sbjct: 279 GMDHTKAMQPVTVLSLIKPWLVKN 302 >C3I7U3.1 C3I7U3_BACTU Putative uncharacterized protein Length = 305 Score = 270 bits (691), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 171/266 (64%), Gaps = 4/266 (1%) Query: 17 CLLLPVNPRPIDGPQADEMMKWGVDPALGRSLIDQLSSSCRVIAFDYEGHVQSCAKPDTL 76 ++LPV + G A+ + WGVDP G+ ID L +++ FDYEGH P+ L Sbjct: 39 TIMLPVAKESVYGQDAETLKLWGVDPEFGKHFIDGLIDKFQILYFDYEGHRLQHPNPENL 98 Query: 77 TPDNLSSDFLAIADATSAQQFAYYGYSWLALSGMQLALRTDRLSALVMGGFPPVSGPYKE 136 TP+N+ D L IAD + +F+YYGYSWLAL+G+QLA+RTDRL +++MGGFPP+ GPYKE Sbjct: 99 TPENIVKDLLTIADEMNINKFSYYGYSWLALAGLQLAIRTDRLDSIIMGGFPPIDGPYKE 158 Query: 137 MLKVTMAAYHLSVSAQKNPDPSPATWDENADEFDWSQAEVTMSEAQTKQFVTLYQALQAF 196 M+ VT Y +V+ +P A N ++ DW ++ + +QTKQFVT+Y+ L F Sbjct: 159 MMVVTNKTYEQAVNNHNSPVIDQAHI--NPEKIDWDNIQIKIDMSQTKQFVTMYENLMEF 216 Query: 197 NDRTAQERITCPRLCFAGSADLIEYGERWGAVRVDIAGPLIRERSALEALGWDVAVLEG- 255 +D+ Q ++ PRL F+G D I YGE +G V VDI G L + + LE LGWD+ +L G Sbjct: 217 DDQDIQHKLIIPRLAFSGEKDTIVYGENFGNVVVDIIGILQKNKQKLEHLGWDIEILRGN 276 Query: 256 -LDHTQAMQPAHVLPLLKPWLDANLH 280 +DHT+AMQP VL L+KPWL NL+ Sbjct: 277 DMDHTKAMQPITVLSLIKPWLIKNLN 302 >C2XIC9.1 C2XIC9_BACCE Putative uncharacterized protein Length = 305 Score = 270 bits (691), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 123/266 (46%), Positives = 171/266 (64%), Gaps = 4/266 (1%) Query: 17 CLLLPVNPRPIDGPQADEMMKWGVDPALGRSLIDQLSSSCRVIAFDYEGHVQSCAKPDTL 76 ++LPV + G A+ + WGVDP G+ ID L +++ FDYEGH P+ L Sbjct: 39 TIMLPVAKESVYGQDAETLKLWGVDPEFGKHFIDGLIDKFQILYFDYEGHRLQHPNPENL 98 Query: 77 TPDNLSSDFLAIADATSAQQFAYYGYSWLALSGMQLALRTDRLSALVMGGFPPVSGPYKE 136 TP+N+ D L IAD + +F+YYGYSWLAL+G+QLA+RTDRL +++MGGFPP+ GPYKE Sbjct: 99 TPENIVKDLLTIADEMNINKFSYYGYSWLALAGLQLAIRTDRLDSIIMGGFPPIDGPYKE 158 Query: 137 MLKVTMAAYHLSVSAQKNPDPSPATWDENADEFDWSQAEVTMSEAQTKQFVTLYQALQAF 196 M+ VT Y +V+ +P A N ++ DW ++ + +QTKQFVT+Y+ L F Sbjct: 159 MMVVTNKTYEQAVNNHNSPVIDQAHI--NPEKIDWDNIQIKIDMSQTKQFVTMYENLMEF 216 Query: 197 NDRTAQERITCPRLCFAGSADLIEYGERWGAVRVDIAGPLIRERSALEALGWDVAVLEG- 255 +D+ Q ++ PRL F+G D I YGE +G V VDI G L + + LE LGWD+ +L G Sbjct: 217 DDQDIQHKLIIPRLAFSGEKDTIVYGENFGNVVVDIIGILQKNKQKLEHLGWDIEILRGN 276 Query: 256 -LDHTQAMQPAHVLPLLKPWLDANLH 280 +DHT+AMQP VL L+KPWL NL+ Sbjct: 277 DMDHTKAMQPITVLSLIKPWLIKNLN 302 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,735,490,933 Number of extensions: 67947990 Number of successful extensions: 157992 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 158007 Number of HSP's successfully gapped: 10 Length of query: 280 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 146 Effective length of database: 1,798,280,193 Effective search space: 262548908178 Effective search space used: 262548908178 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)