BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0495.0001.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAW3.1 B3KAW3_9BACI Regulatory protein MerR 294 4e-78 Q5WBF1.1 Q5WBF1_BACSK MarR family transcriptional regulator 275 2e-72 C0ZD53.1 C0ZD53_BREBN Probable transcriptional regulator 269 1e-70 B3KJT9.1 B3KJT9_9BACI Regulatory protein MerR 191 7e-47 B3KEN5.1 B3KEN5_9BACI Regulatory protein MerR 166 2e-39 >B3KAW3.1 B3KAW3_9BACI Regulatory protein MerR Length = 253 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 134/240 (55%), Positives = 173/240 (72%) Query: 4 MQYYKPVEIASVLGISTSALRHYESWGVVPAPERATNGYRMYTELHLAYFRCLRAMIPGF 63 M YYKP +IA L ISTSALRHYESWGVVP+PER GYR+YT++HLAYFRCLRAM PGF Sbjct: 1 MHYYKPKDIAKELHISTSALRHYESWGVVPSPERNEKGYRLYTKMHLAYFRCLRAMFPGF 60 Query: 64 GYKITYDVLRNIQQGDMDQALWLAGAEQARLQEEKXXXXXXXXXXXXPEISSIKGRPVSH 123 GY +TY+V+R+IQ+ +MD+ALWL EQ +LQ+EK PE+ SI+ + + Sbjct: 61 GYAVTYEVIRHIQKREMDEALWLVNGEQVKLQQEKTIADETLALLENPELDSIRDKKLKA 120 Query: 124 RMSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYF 183 M+IGE A + V+ SAIRHWEKEGL+TP RNPENGYR+Y+ H VY+ Sbjct: 121 HMTIGEVAELTNVESSAIRHWEKEGLITPDRNPENGYRLYSPSHVRQILLIRSLRRTVYY 180 Query: 184 LERMKELVEAVEQHSLEKAKEVTEHALGRIHQRNRQQYSGVHQLMELCAQAGLLRPEDAA 243 LE +KE+++AVE S+E+AK++ AL IHQRN QQ++G+H+LMELC + GLL +DAA Sbjct: 181 LESIKEIIQAVEHQSIEQAKKLVREALSVIHQRNLQQFNGIHKLMELCMEVGLLEFDDAA 240 >Q5WBF1.1 Q5WBF1_BACSK MarR family transcriptional regulator Length = 243 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 125/237 (52%), Positives = 168/237 (70%) Query: 4 MQYYKPVEIASVLGISTSALRHYESWGVVPAPERATNGYRMYTELHLAYFRCLRAMIPGF 63 M++Y+P++IA L ISTSALRHYESWG++P PERA N YR+YT HLAYFRCLRAMIPGF Sbjct: 1 MKHYRPIDIARELNISTSALRHYESWGIIPPPERAANQYRLYTNEHLAYFRCLRAMIPGF 60 Query: 64 GYKITYDVLRNIQQGDMDQALWLAGAEQARLQEEKXXXXXXXXXXXXPEISSIKGRPVSH 123 G+ +T VLR +Q GD+D+A WL EQA+L EK P++S I+G+ + Sbjct: 61 GFPLTAKVLRAVQNGDVDKAFWLVSGEQAQLYNEKTVAEQTLALLRNPDLSPIEGKKLKS 120 Query: 124 RMSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYF 183 M+IGEAA + V PSAIRHWEKEGL+ P R+PENGYR++T +H VYF Sbjct: 121 HMTIGEAATLTEVPPSAIRHWEKEGLIHPGRHPENGYRLFTPMHIRQILLIRTMRRTVYF 180 Query: 184 LERMKELVEAVEQHSLEKAKEVTEHALGRIHQRNRQQYSGVHQLMELCAQAGLLRPE 240 LE +K++V A+E H++E+A+++TE AL +HQRNR Q+ G+ +LM LC + GL++ E Sbjct: 181 LENIKKVVHALEHHNVEEAQKMTEQALSTLHQRNRDQFWGIQKLMALCHEVGLIKEE 237 >C0ZD53.1 C0ZD53_BREBN Probable transcriptional regulator Length = 234 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/228 (57%), Positives = 155/228 (67%) Query: 4 MQYYKPVEIASVLGISTSALRHYESWGVVPAPERATNGYRMYTELHLAYFRCLRAMIPGF 63 M YYKP+EIA L ISTSALRHYESWGVVPAP+RA NGYR+YTE+HLAYFRCLRAM PGF Sbjct: 1 MSYYKPIEIARELHISTSALRHYESWGVVPAPDRADNGYRLYTEIHLAYFRCLRAMFPGF 60 Query: 64 GYKITYDVLRNIQQGDMDQALWLAGAEQARLQEEKXXXXXXXXXXXXPEISSIKGRPVSH 123 G IT +VLR+IQ+ DMD A WL EQA LQ+EK ++S + + Sbjct: 61 GVAITCEVLRSIQKADMDAAFWLVNKEQANLQQEKVAADQTLELLENLDVSLPLNKKWRN 120 Query: 124 RMSIGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYF 183 RM+IGE AA GV SAIRHWEKEGLL R+PENGYR +T + VYF Sbjct: 121 RMTIGEVAAYTGVTTSAIRHWEKEGLLVLPRDPENGYRQFTPMDIRKILLIRTLRNTVYF 180 Query: 184 LERMKELVEAVEQHSLEKAKEVTEHALGRIHQRNRQQYSGVHQLMELC 231 L MKE+V+AVE S+E+AK+VT A+ IH RNR Q GV +L+ELC Sbjct: 181 LTNMKEIVQAVENQSMEQAKKVTADAIKSIHDRNRHQMFGVRRLVELC 228 >B3KJT9.1 B3KJT9_9BACI Regulatory protein MerR Length = 233 Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 133/230 (57%) Query: 8 KPVEIASVLGISTSALRHYESWGVVPAPERATNGYRMYTELHLAYFRCLRAMIPGFGYKI 67 +P++IA LGI+TSAL+HYE WG+VP ERA NGYR+YTE H AYF C+RAM PGFG + Sbjct: 4 RPIDIAKKLGITTSALKHYEKWGIVPPAERAPNGYRLYTEEHAAYFECIRAMFPGFGVDV 63 Query: 68 TYDVLRNIQQGDMDQALWLAGAEQARLQEEKXXXXXXXXXXXXPEISSIKGRPVSHRMSI 127 T V++ + + ++D ALW+ QARLQ++K ++ ++ R ++I Sbjct: 64 TKRVMKKLLERELDDALWIVSEVQARLQQDKILAERTIRILETEQLDAVDARGRKKELTI 123 Query: 128 GEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFLERM 187 GE AA GV SAIRHWEKEG+L R+ +NGYR + Y LE + Sbjct: 124 GEVAAEIGVPTSAIRHWEKEGVLILPRDQDNGYRKFDGAQIRQIMIIRILRSANYPLEVI 183 Query: 188 KELVEAVEQHSLEKAKEVTEHALGRIHQRNRQQYSGVHQLMELCAQAGLL 237 K+++ +E H + A+ V + L ++ N Q GVH L +LC L+ Sbjct: 184 KDVLHELEHHQVHNARRVLKDTLVYLNHLNHNQIRGVHYLYQLCQVLKLM 233 >B3KEN5.1 B3KEN5_9BACI Regulatory protein MerR Length = 233 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 128/222 (57%) Query: 7 YKPVEIASVLGISTSALRHYESWGVVPAPERATNGYRMYTELHLAYFRCLRAMIPGFGYK 66 + P ++A L +ST+ LR YE+ G+VP R ++ R YT LH F LR+++ GF Sbjct: 5 FTPKQMAKKLHVSTTTLRRYENLGLVPDVPRTSSNRRYYTPLHDQAFLALRSLVQGFDLP 64 Query: 67 ITYDVLRNIQQGDMDQALWLAGAEQARLQEEKXXXXXXXXXXXXPEISSIKGRPVSHRMS 126 I Y+V+ +++G ++QALW+ +Q +Q EK + S + V+ M Sbjct: 65 IAYEVMSLLKKGHVEQALWMINVQQYNIQVEKQRVEEVMRLIHQTDFSKYRNIQVTDEMK 124 Query: 127 IGEAAAIAGVQPSAIRHWEKEGLLTPLRNPENGYRMYTAVHXXXXXXXXXXXXXVYFLER 186 IGE A IAGV PSAIRHWEKEGL+ RN ENGYR++T+ V+F+E Sbjct: 125 IGEVALIAGVNPSAIRHWEKEGLIRAKRNAENGYRVFTSQELKKIIVLSSLRKTVFFIES 184 Query: 187 MKELVEAVEQHSLEKAKEVTEHALGRIHQRNRQQYSGVHQLM 228 MK+L+EA+E H L + + AL +++++ +Q +G+ ++M Sbjct: 185 MKQLLEALETHDLTTIERSFKVALQKLNEQLEKQMNGISEMM 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,353,993,556 Number of extensions: 47863220 Number of successful extensions: 129307 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 129549 Number of HSP's successfully gapped: 63 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)