BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0494.0002.p
         (96 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9KFX8.1 Q9KFX8_BACHD BH0342 protein                                  138   2e-31
Q5WBY6.1 Q5WBY6_BACSK Putative uncharacterized protein                135   8e-31
B1YHA8.1 B1YHA8_EXIS2 CRISPR-associated protein Cas2                  134   3e-30
B8I210.1 B8I210_CLOCE CRISPR-associated protein Cas2                  130   3e-29
B8FSL2.1 B8FSL2_DESHD CRISPR-associated protein Cas2                  129   8e-29

>Q9KFX8.1 Q9KFX8_BACHD BH0342 protein
          Length = 96

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/96 (65%), Positives = 78/96 (81%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          MLV+ITYDV T S  G  RLRKV+K CQNYGQRVQNSVFEC+VD+ Q   LK++L ++ID
Sbjct: 1  MLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLID 60

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
          +++DS+R Y+LGNN+K KVEH+G K SIDLE PLI 
Sbjct: 61 EEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF 96


>Q5WBY6.1 Q5WBY6_BACSK Putative uncharacterized protein
          Length = 129

 Score =  135 bits (341), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 79/96 (82%)

Query: 1   MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
           MLV+ITYDV T S  G  RLRKV+K CQNYGQRVQNSVFEC+VD+AQ   LK++L ++ID
Sbjct: 34  MLVLITYDVQTSSLGGSKRLRKVAKACQNYGQRVQNSVFECIVDSAQLTSLKLELSSLID 93

Query: 61  DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
            ++DS+R Y+LGNN+K+KVEH+G K ++D+E PLI 
Sbjct: 94  KEKDSLRIYRLGNNYKSKVEHIGAKPTVDIEDPLIF 129


>B1YHA8.1 B1YHA8_EXIS2 CRISPR-associated protein Cas2
          Length = 96

 Score =  134 bits (336), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 79/96 (82%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          MLV+ITYDV+T+S  G+ RLR V+K+CQ YGQRVQNSVFEC+VD  +F  LK++LK II+
Sbjct: 1  MLVLITYDVNTVSPGGKKRLRHVAKLCQRYGQRVQNSVFECIVDQTEFMLLKLRLKEIIN 60

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
           + DS+RFY+LGN + +KVEH GIK S+D+EGPLI 
Sbjct: 61 HERDSLRFYKLGNQYISKVEHYGIKSSLDVEGPLIF 96


>B8I210.1 B8I210_CLOCE CRISPR-associated protein Cas2
          Length = 96

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 80/96 (83%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          M+V+ITYDV+T S  G+ RLR+V+K C NYGQRVQNSVFECV+DAA+  E+K KL+ IID
Sbjct: 1  MMVLITYDVNTESDGGKKRLRRVAKQCINYGQRVQNSVFECVMDAAKCREVKNKLEKIID 60

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
           ++DS+RFY LGNN++NKVEH+G K S D+EG LI+
Sbjct: 61 KEKDSLRFYYLGNNYQNKVEHIGTKDSFDVEGTLII 96


>B8FSL2.1 B8FSL2_DESHD CRISPR-associated protein Cas2
          Length = 99

 Score =  129 bits (324), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query: 1  MLVVITYDVSTLSGEGQSRLRKVSKICQNYGQRVQNSVFECVVDAAQFAELKIKLKTIID 60
          +LV+ITYDV+T +  G+ RLR+V+K C NYGQRVQNSVFECV+DAA+F E++ KL+ IID
Sbjct: 4  ILVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKFREVQHKLEQIID 63

Query: 61 DDEDSIRFYQLGNNHKNKVEHVGIKKSIDLEGPLIL 96
           + DS+RFY LGNN+KNKVEH+G K S ++E  LI+
Sbjct: 64 TETDSLRFYMLGNNYKNKVEHIGAKPSFNVEDTLII 99


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 509,373,806
Number of extensions: 16229277
Number of successful extensions: 46176
Number of sequences better than 1.0e-05: 197
Number of HSP's gapped: 46199
Number of HSP's successfully gapped: 197
Length of query: 96
Length of database: 3,060,696,203
Length adjustment: 65
Effective length of query: 31
Effective length of database: 2,448,330,228
Effective search space: 75898237068
Effective search space used: 75898237068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)