BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0028.p (224 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q892Z5.1 Q892Z5_CLOTE Sporulation initiation inhibitor soj famil... 201 5e-50 A8SCL2.1 A8SCL2_9FIRM Putative uncharacterized protein 188 3e-46 A8S8J5.1 A8S8J5_9FIRM Putative uncharacterized protein 187 4e-46 Q1JB48.1 Q1JB48_STRPB Chromosome partitioning protein parA 183 1e-44 A5KN71.1 A5KN71_9FIRM Putative uncharacterized protein 183 1e-44 >Q892Z5.1 Q892Z5_CLOTE Sporulation initiation inhibitor soj family protein Length = 264 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 105/225 (46%), Positives = 138/225 (61%), Gaps = 30/225 (13%) Query: 30 RTTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLS 89 + VI+I NQKGG KT T NL YAL+ GKKVLL+DFDPQ +L++CFG + D ++ + Sbjct: 6 KNKVISIVNQKGGVAKTVTTLNLGYALAEMGKKVLLIDFDPQSSLTVCFGYDNTDSIKTT 65 Query: 90 MFNVMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEI------------------- 130 ++N+M + ++ LP EEYI + GNID+IP ++ELS EI Sbjct: 66 IYNLMALAIEEKSLPKKEEYILSAGNIDIIPCSLELSAVEIALVNVMSRELVLKSIVDKV 125 Query: 131 -----------NPSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPR 179 +PSLG+LTINALAA DSV+IPV PQ SA GL LLR I++VKK INP Sbjct: 126 KTDYDYVIIDCSPSLGMLTINALAACDSVIIPVTPQYLSAKGLELLLRNIIRVKKRINPS 185 Query: 180 ISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 I ++GIL+TM R L KE +++ Y HIFE +IP SVK Sbjct: 186 IEVDGILLTMYAERMKLSKEVLSIIQEAYGSHIHIFESKIPTSVK 230 >A8SCL2.1 A8SCL2_9FIRM Putative uncharacterized protein Length = 278 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 139/229 (60%), Gaps = 30/229 (13%) Query: 26 KNSGRTTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQ 85 K S + T I I NQKGGTGKTTT NL L+ EGKKVLLVD DPQG+L++ G +QPD+ Sbjct: 3 KISKKATTIAIVNQKGGTGKTTTCENLGIGLAMEGKKVLLVDADPQGSLTISMGWQQPDE 62 Query: 86 LQLSMFNVMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN-------------- 131 L ++ ++ M+D+ +PP E +H +DLIP+NIEL+ E++ Sbjct: 63 LPTTLSTLIAKAMNDQSIPPGEGVLHHTEGVDLIPANIELAGLEVSLVNCMNREKMLKQV 122 Query: 132 ----------------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKC 175 PSLG+LT+NALAA+D+ LIPV Q SA GL QLL+ + KV++ Sbjct: 123 LEGAKHEYDFILLDCTPSLGMLTVNALAAADTTLIPVQAQYLSAKGLEQLLQTVQKVRRQ 182 Query: 176 INPRISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 INPR+ IEGIL+TM ++RTN ++ L++ Y +F+ IP SV+ Sbjct: 183 INPRLKIEGILLTMTDSRTNYGQQIDNLIRGAYGSKIKVFDQTIPRSVR 231 >A8S8J5.1 A8S8J5_9FIRM Putative uncharacterized protein Length = 263 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 139/229 (60%), Gaps = 30/229 (13%) Query: 26 KNSGRTTVITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQ 85 K S + T I I NQKGGTGKTTT NL L+ EGKKVLLVD DPQG+L++ G +QPD+ Sbjct: 3 KISKKATTIAIVNQKGGTGKTTTCENLGIGLAMEGKKVLLVDADPQGSLTISMGWQQPDE 62 Query: 86 LQLSMFNVMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN-------------- 131 L ++ ++ M+D+ +PP E +H +DLIP+NIEL+ E++ Sbjct: 63 LPTTLSTLIAKAMNDQSIPPGEGVLHHTEGVDLIPANIELAGLEVSLVNCMNREKMLKQV 122 Query: 132 ----------------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKC 175 PSLG+LT+NALAA+D+ LIPV Q SA GL QLL+ + KV++ Sbjct: 123 LEGAKHEYDFILLDCTPSLGMLTVNALAAADTTLIPVQAQYLSAKGLEQLLQTVQKVRRQ 182 Query: 176 INPRISIEGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 INPR+ IEGIL+TM ++RTN ++ L++ Y +F+ IP SV+ Sbjct: 183 INPRLKIEGILLTMTDSRTNYGQQIDNLIRGAYGSKIKVFDQTIPRSVR 231 >Q1JB48.1 Q1JB48_STRPB Chromosome partitioning protein parA Length = 275 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 129/222 (58%), Gaps = 30/222 (13%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSMFN 92 VI + NQKGG GKTTTA NL LS +GKKVLLVD D Q NL+M G +PD L +S+ Sbjct: 6 VIALTNQKGGVGKTTTAVNLGVCLSKQGKKVLLVDADAQANLTMSLGYPRPDDLPISLAT 65 Query: 93 VMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN--------------------- 131 +M I+ D+P + +H +DL+PSNIELS E+ Sbjct: 66 IMQDIIDDKPFDVQKGILHHSEGVDLLPSNIELSGLEVRLINAISRERVLTTCINEVKKN 125 Query: 132 ---------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRISI 182 PSLG+LTINALAA+DSV+IP P SA GL LLR + KV++ INP + I Sbjct: 126 YDYVLIDCMPSLGMLTINALAAADSVVIPTQPHYLSAKGLELLLRSVSKVRRQINPHLRI 185 Query: 183 EGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 +GILMTM RTN+ KE LV+ Y + +F+ QIP S++ Sbjct: 186 DGILMTMVMPRTNISKEVTALVRSAYGQNIKVFDAQIPHSIR 227 >A5KN71.1 A5KN71_9FIRM Putative uncharacterized protein Length = 275 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 129/222 (58%), Gaps = 30/222 (13%) Query: 33 VITIANQKGGTGKTTTAYNLAYALSNEGKKVLLVDFDPQGNLSMCFGIEQPDQLQLSMFN 92 VI + NQKGG GKTTTA NL LS +GKKVLLVD D Q NL+M G +PD L +S+ Sbjct: 6 VIALTNQKGGVGKTTTAVNLGVCLSKQGKKVLLVDADAQANLTMSLGYPRPDDLPISLAT 65 Query: 93 VMNAIMSDEPLPPAEEYIHTHGNIDLIPSNIELSVAEIN--------------------- 131 +M I+ D+P + +H +DL+PSNIELS E+ Sbjct: 66 IMQDIIDDKPFDVQKGILHHSEGVDLLPSNIELSGLEVRLINAISRERVLTTCINEVKKN 125 Query: 132 ---------PSLGLLTINALAASDSVLIPVNPQPWSATGLTQLLRIIVKVKKCINPRISI 182 PSLG+LTINALAA+DSV+IP P SA GL LLR + KV++ INP + I Sbjct: 126 YDYVLIDCMPSLGMLTINALAAADSVVIPTQPHYLSAKGLELLLRSVSKVRRQINPHLRI 185 Query: 183 EGILMTMCNTRTNLYKEAFRLVKVYYRETFHIFEVQIPLSVK 224 +GILMTM RTN+ KE LV+ Y + +F+ QIP S++ Sbjct: 186 DGILMTMVMPRTNISKEVTALVRSAYGQNIKVFDAQIPHSIR 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,306,301,409 Number of extensions: 52478892 Number of successful extensions: 173089 Number of sequences better than 1.0e-05: 2421 Number of HSP's gapped: 171703 Number of HSP's successfully gapped: 2824 Length of query: 224 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 93 Effective length of database: 1,826,543,238 Effective search space: 169868521134 Effective search space used: 169868521134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)