BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0026.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0FQL0.1 C0FQL0_9FIRM Putative uncharacterized protein 290 9e-77 C4Z2D3.1 C4Z2D3_9FIRM ABC-2 type transport system ATP-binding pr... 286 1e-75 B0NFN8.1 B0NFN8_EUBSP Putative uncharacterized protein 271 4e-71 A6NXA0.1 A6NXA0_9BACE Putative uncharacterized protein 266 2e-69 B1B7Q1.1 B1B7Q1_CLOBO ABC transporter ATP-binding protein 265 3e-69 >C0FQL0.1 C0FQL0_9FIRM Putative uncharacterized protein Length = 291 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 142/282 (50%), Positives = 196/282 (69%), Gaps = 2/282 (0%) Query: 1 MEIKAENLTRTFGTKRAIDELNFTLPEGVYGLLGDNGAGKSTLMRILVAVDHQTSGKVSF 60 ME+ + LT+ +G K A+D ++ TL GVYGLLG NGAGK+TLMR+L AV TSG+V Sbjct: 1 MELSLDRLTKQYGRKIAVDCVSATLKPGVYGLLGANGAGKTTLMRMLCAVLESTSGEVLL 60 Query: 61 NGKDIFHMNDDYRNLVGYIPQDFEVYPAYTATEYLEYMGALKGLSKKELKHKVPEVLKFV 120 +GK+I M DYRN++GY+PQDF YP YTA E+L Y+ ALKG+ K K +V E+L+ V Sbjct: 61 DGKEITSMGADYRNVLGYLPQDFGYYPNYTAVEFLMYIAALKGIPKNVAKKRVTELLEVV 120 Query: 121 NLEKVANKKVKTFSGGMKRRVGIAQAIINDPKILIFDEPTAGLDPHERIRFSNIISEMGQ 180 +L VANKKVKTFSGGMK+RVGIAQA++N+PKILI DEPTAGLDP ER+RF N++SE Sbjct: 121 DLSHVANKKVKTFSGGMKQRVGIAQALLNNPKILILDEPTAGLDPKERVRFRNLLSEYAG 180 Query: 181 DKIILFSTHIISDIEAITTNVIILNQGKIKEQGNVQKMLSGIKGKVFTEEMDRERLASFK 240 DKI++ STHI+SDIEAI V+++ +GK QG V +++ GKV+ + + ++ Sbjct: 181 DKIVILSTHIVSDIEAIADEVLLMKKGKFVLQGTVPELIHKANGKVWELSVSPQEARQWQ 240 Query: 241 KEHLIVRIRQEENIVSVRYLGEQESG--AIVCEPTLEDYYIY 280 + + +R E + +R + + A+ CE TLED Y++ Sbjct: 241 TKTTVANLRHEGKEIILRIISDNMPSERAVPCEATLEDLYLF 282 >C4Z2D3.1 C4Z2D3_9FIRM ABC-2 type transport system ATP-binding protein Length = 291 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/282 (49%), Positives = 195/282 (69%), Gaps = 2/282 (0%) Query: 1 MEIKAENLTRTFGTKRAIDELNFTLPEGVYGLLGDNGAGKSTLMRILVAVDHQTSGKVSF 60 ME+ + LT+ +G K A+D ++ TL GVYGLLG NGAGK+TLMR+L A+ TSG+V Sbjct: 1 MELSLDRLTKQYGRKIAVDCVSATLKPGVYGLLGANGAGKTTLMRMLCAILESTSGEVLL 60 Query: 61 NGKDIFHMNDDYRNLVGYIPQDFEVYPAYTATEYLEYMGALKGLSKKELKHKVPEVLKFV 120 +GK++ M DYRN++GY+PQDF YP YTA E+L Y+ ALKG+ K K + E+L+ V Sbjct: 61 DGKEVTSMGADYRNVLGYLPQDFGYYPNYTAMEFLMYIAALKGIPKNVAKKRATELLEVV 120 Query: 121 NLEKVANKKVKTFSGGMKRRVGIAQAIINDPKILIFDEPTAGLDPHERIRFSNIISEMGQ 180 +L VANKKVKTFSGGMK+RVGIAQA++N+PKILI DEPTAGLDP ER+RF N++SE Sbjct: 121 DLSLVANKKVKTFSGGMKQRVGIAQALLNNPKILILDEPTAGLDPKERVRFRNLLSEYAG 180 Query: 181 DKIILFSTHIISDIEAITTNVIILNQGKIKEQGNVQKMLSGIKGKVFTEEMDRERLASFK 240 DKI++ STHI+SDIEAI V+++ +GK QG V +++ GKV+ + + ++ Sbjct: 181 DKIVILSTHIVSDIEAIADEVLLMKKGKFILQGTVPELIHKANGKVWELSVSPQEARQWQ 240 Query: 241 KEHLIVRIRQEENIVSVRYLGEQESG--AIVCEPTLEDYYIY 280 + + +R E + +R + + A+ CE TLED Y++ Sbjct: 241 TKATVANLRHEGKEIILRIISDNMPSERAVPCEATLEDLYLF 282 >B0NFN8.1 B0NFN8_EUBSP Putative uncharacterized protein Length = 295 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 130/282 (46%), Positives = 194/282 (68%), Gaps = 2/282 (0%) Query: 1 MEIKAENLTRTFGTKRAIDELNFTLPEGVYGLLGDNGAGKSTLMRILVAVDHQTSGKVSF 60 M++K ENLT+ FG A+D LN T GVYGLLG NGAGK+TLMR+L + TSG ++ Sbjct: 1 MKLKFENLTKEFGDFTAVDHLNLTTTNGVYGLLGVNGAGKTTLMRMLCTLLKPTSGTITC 60 Query: 61 NGKDIFHMNDDYRNLVGYIPQDFEVYPAYTATEYLEYMGALKGLSKKELKHKVPEVLKFV 120 NG+DIF M+ +YR L+GY+PQ+F YP +T EYL Y+ ALKG+ + +V E++ V Sbjct: 61 NGRDIFEMDGNYRKLLGYLPQEFGFYPEFTVQEYLLYIAALKGIRPVVARRRVKELIAKV 120 Query: 121 NLEKVANKKVKTFSGGMKRRVGIAQAIINDPKILIFDEPTAGLDPHERIRFSNIISEMGQ 180 L K A KK+K SGGMKRR GIAQA++N+PKIL+ DEPTAGLDP+ERIRF N+ISE+ + Sbjct: 121 GLTKAAGKKMKKLSGGMKRRAGIAQAMLNNPKILVLDEPTAGLDPNERIRFRNLISELSE 180 Query: 181 DKIILFSTHIISDIEAITTNVIILNQGKIKEQGNVQKMLSGIKGKVFTEEMDRERLASFK 240 ++++L STHI+SDIE I + ++ GK+ +G+ +++S + V+ +D+ +++F Sbjct: 181 ERLVLLSTHIVSDIEYIANEIWLMKDGKLMHKGSADQIISSMPQDVWECLVDKSMVSAFI 240 Query: 241 KEHLIVRIRQEENIVSVRYLGEQESGAIV--CEPTLEDYYIY 280 K++ I ++ E + V +R + ++ A E +LED ++Y Sbjct: 241 KKYKISNMKSEPHGVELRIISSEKPCASARHVEASLEDVFLY 282 >A6NXA0.1 A6NXA0_9BACE Putative uncharacterized protein Length = 309 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/287 (46%), Positives = 194/287 (67%), Gaps = 3/287 (1%) Query: 1 MEIKAENLTRTFGTKRAIDELNFTLPEGVYGLLGDNGAGKSTLMRILVAVDHQTSGKVSF 60 ME+K LT+ FG+K A+D+LN TL GVYGLLG NGAGK+TLMR+L + + TSGK+ Sbjct: 19 MELKTIGLTKKFGSKTAVDDLNITLTNGVYGLLGANGAGKTTLMRLLCNIQNPTSGKILL 78 Query: 61 NGKDIFHMNDDYRNLVGYIPQDFEVYPAYTATEYLEYMGALKGLSKKELKHKVPEVLKFV 120 NGK+I + + YRNL+GY+PQ F YP ++A ++L Y+ ALKGL +K + K E+L+ V Sbjct: 79 NGKNIVGLGERYRNLLGYLPQHFGYYPDFSAFDFLLYVSALKGLGEKAARKKSKELLEAV 138 Query: 121 NLEKVANKKVKTFSGGMKRRVGIAQAIINDPKILIFDEPTAGLDPHERIRFSNIISEMGQ 180 +L + + K+KTFSGGMK+R+GIAQA++NDP ILI DEPTAGLDP ER+RF N+IS + Sbjct: 139 DLSRESKHKIKTFSGGMKQRLGIAQAMLNDPHILILDEPTAGLDPKERVRFRNLISAFSK 198 Query: 181 DKIILFSTHIISDIEAITTNVIILNQGKIKEQGNVQKMLSGIKGKVFTEEMDRERLASFK 240 D+I++ STHI+SD+E I +I++ G+I GN Q++ S I G+V+ + + Sbjct: 199 DRIVILSTHIVSDVEFIAEEIIMMKSGQIIHFGNPQEITSEIDGQVWECTVPTAYAEKYA 258 Query: 241 KEHLIVRIRQE-ENIVSVRYLGEQES--GAIVCEPTLEDYYIYLGSG 284 + +R EN +R +G++ A+ +PTLED Y++ G Sbjct: 259 AAYNTSNLRNTGENQTILRIIGDRPPMENAVRVQPTLEDLYLFYFKG 305 >B1B7Q1.1 B1B7Q1_CLOBO ABC transporter ATP-binding protein Length = 294 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 129/282 (45%), Positives = 190/282 (67%), Gaps = 2/282 (0%) Query: 1 MEIKAENLTRTFGTKRAIDELNFTLPEGVYGLLGDNGAGKSTLMRILVAVDHQTSGKVSF 60 ME+ LTR F K A++E++ + GVYGLLG NGAGK+TLMR++ V + TSG + Sbjct: 1 MELTFNKLTRKFNDKIAVNEISTKVSTGVYGLLGANGAGKTTLMRMICGVINPTSGDILL 60 Query: 61 NGKDIFHMNDDYRNLVGYIPQDFEVYPAYTATEYLEYMGALKGLSKKELKHKVPEVLKFV 120 + +I + ++YRNL+GY+PQDF YP +TA E++ Y+ ALKG+S K K K E+L+ V Sbjct: 61 DNNNICDLGEEYRNLLGYLPQDFGYYPDFTAKEFMYYIAALKGISTKRAKVKTKELLEMV 120 Query: 121 NLEKVANKKVKTFSGGMKRRVGIAQAIINDPKILIFDEPTAGLDPHERIRFSNIISEMGQ 180 L +VANKK+ TFSGGMK+R+GIAQA++NDPKILI DEPTAGLDP ER+RF N+++ + Sbjct: 121 ALSQVANKKIGTFSGGMKQRLGIAQAVLNDPKILILDEPTAGLDPKERVRFRNLVANFAK 180 Query: 181 DKIILFSTHIISDIEAITTNVIILNQGKIKEQGNVQKMLSGIKGKVFTEEMDRERLASFK 240 DKI++ STHI+SDIE I + I+ +G QG V ++++ KG V+ +D + ++ Sbjct: 181 DKIVILSTHIVSDIEYIADKIFIMKEGNFIMQGTVDELIALAKGYVWECVVDSREVEKYE 240 Query: 241 KEHLIVRIRQEENIVSVRYLGEQE--SGAIVCEPTLEDYYIY 280 ++ I + V +R + +++ A+ PTLED Y+Y Sbjct: 241 SKYCIGNLHHLNGKVKLRIISKEKPMEDAVSETPTLEDLYLY 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,686,266,883 Number of extensions: 70978424 Number of successful extensions: 500412 Number of sequences better than 1.0e-05: 93513 Number of HSP's gapped: 382884 Number of HSP's successfully gapped: 99975 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)