BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0025.p (401 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0PYD6.1 A0PYD6_CLONN Lipoprotein, putative 81 2e-13 B1B7Q0.1 B1B7Q0_CLOBO Putative membrane protein 76 5e-12 A0PYE0.1 A0PYE0_CLONN Membrane protein, putative 76 8e-12 Q24XC0.1 Q24XC0_DESHY Putative uncharacterized protein 64 2e-08 B8FW79.1 B8FW79_DESHD Putative uncharacterized protein 64 3e-08 >A0PYD6.1 A0PYD6_CLONN Lipoprotein, putative Length = 412 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 1 MRNFISLELKKI-RNKNTVXXXXXXXXXXXXPWVQTAQSIDVLDDEGNIHSGLGGWQILR 59 M I EL+KI + ++T V + +D+ GN GL ++ R Sbjct: 1 MGTLIKYELRKIFKTRSTKVSLIVILLLMACSVVSNIKHRLYVDEMGNEIHGLKAIELKR 60 Query: 60 ERTVE--GTMTTDYLLQMKQNYQ--NSVDKPY-IEGEVDTDRKLGKRLTFPHDALHW-EL 113 E+ + G ++ D L + +YQ N K Y + D GK + + L Sbjct: 61 EQVTKHAGYLSEDKLTNIFNDYQKINKDSKSYKPNSKWLKDEVFGKYIMNKDEILDLIRQ 120 Query: 114 NFPY-EKYRVLDNSLNLTDEQLANFYVDWKGSFTEYLSNEQNLFPYTEKQIEIISQKMQK 172 +F Y +KY +SL +++ + +FY E L+ + + Y+E + + + K Sbjct: 121 DFSYADKYNYDIDSL--SNKDIKSFYKRRDTKIKEILNKKYSHGSYSESEKKYVCAINNK 178 Query: 173 VTTPFLFKYDSGWEYLKIGLLHTIHLFFMFLAFI-LCEGFSKNGSKGIDKVTLSTKESRR 231 ++ PF F Y GWE + L H I + +F+ I + F+ G D + LST+ + Sbjct: 179 ISKPFYFDYSDGWEGIFRELFHIILISIIFVIGIWVAPIFALEYETGADSIILSTRYGKN 238 Query: 232 KLISYKLGAACVFSTIAYFVYIAVVLLFITA---VYTLHGWDSSVQIGTI-TFYSMNQLK 287 KLI K+ A + +T FVY +VL+F +Y +HGW++S+Q+ I + Y + L+ Sbjct: 239 KLIIAKILAVFLCTT---FVYFGLVLIFTVCMLWIYGIHGWNASLQVIFIKSVYPFSVLE 295 Query: 288 EGLLYIAMGYFSTLVVTHLILFLS 311 LL +A+GY L + I+ LS Sbjct: 296 GYLLGVALGYLVALAFSSFIMVLS 319 >B1B7Q0.1 B1B7Q0_CLOBO Putative membrane protein Length = 412 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 87/378 (23%), Positives = 158/378 (41%), Gaps = 26/378 (6%) Query: 1 MRNFISLELKKI-RNKNTVXXXXXXXXXXXXPWVQTAQSIDVLDDEGNIHSGLGGWQILR 59 M I EL+KI + K+T + T + D D G + +GL ++ + Sbjct: 1 MGTLIRYELRKIFKRKSTKISLGVILLWLLCLGIFTIKDQDYTDKSGKMINGLKSIELKK 60 Query: 60 ERTV--EGTMTTDYLLQMKQNYQNSVDKPYIEGEVDTDRKLGKRLTFPH--------DAL 109 E EG ++ + L + +YQ + + K K F D L Sbjct: 61 EGVTKHEGYLSKEKLTNVFNDYQKIIKD---SKNYQPNSKWLKNEAFAKYVDKNEILDLL 117 Query: 110 HWELNFPYE-KYRVLDNSLNLTDEQLANFYVDWKGSFTEYLSNEQNLFPYTEKQIEIISQ 168 + ++ + Y ++D+ L + + +FY E L+ + + Y++ + + + Sbjct: 118 RQDFSYADKYNYDIIDS---LHSKDIKDFYKRRDEKVKEILNKKYSHGSYSKSEKDYVIS 174 Query: 169 KMQKVTTPFLFKYDSGWEYLKIGLLHTIHLFFMFLAFILCEG--FSKNGSKGIDKVTLST 226 QK++ PF F Y +GWE + + L I + L +C F+ G D V LST Sbjct: 175 LNQKISKPFYFNYFNGWEEI-LRRLFQIMAMLIALVISICVAPIFALEYQTGADSVILST 233 Query: 227 KESRRKLISYKLGAACVFSTIAYFVYIAVVLLFITAVYTLHGWDSSVQIGTI-TFYSMNQ 285 + + KLI K+ A + +T YF I +V L + Y + GW+++ Q+ +I + Y + Sbjct: 234 RYGKNKLIIAKILAVFLCATFVYFGLILIVTLGMLWCYGIEGWNAAFQVMSIKSVYPYSV 293 Query: 286 LKEGLLYIAMGYFSTLVVTHLILFLSVVXXXXXXXXXXXLALSLIYFYLVNTYQMGRGAL 345 L+ LL +A+GY L + I+ LS + L+ F + + Sbjct: 294 LEVYLLGVAIGYLVILAFSSFIMLLS----SKIKTSAIMVISGLLIFVPILVRRDKENLA 349 Query: 346 IEKVMVFMPQNFINNLIG 363 + +VM P N +N + Sbjct: 350 LNRVMNLFPGNAVNTFVN 367 >A0PYE0.1 A0PYE0_CLONN Membrane protein, putative Length = 412 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 84/328 (25%), Positives = 145/328 (44%), Gaps = 26/328 (7%) Query: 1 MRNFISLELKKI-RNKNTVXXXXXXXXXXXXPWVQTAQSIDVLDDEGNIHSGLG--GWQI 57 M I ELKKI R K+T W+ SI + D++ SG G G + Sbjct: 1 MGTLIKYELKKIFRRKSTKVSLVVMLL-----WLLCWGSIIIKDNDYTDKSGKGINGLKS 55 Query: 58 LRERTV-----EGTMTTDYLLQMKQNYQNSV--DKPYIEGEVDTDRKLGKRLTFPHDALH 110 + + V EG ++ D L + +YQ + K Y + + H+ L Sbjct: 56 IELKKVAVTKHEGYLSKDKLTNVFNDYQKIIKDSKNYQPNSKWLKNEAFAKYVDKHEILD 115 Query: 111 W-ELNFPYE---KYRVLDNSLNLTDEQLANFYVDWKGSFTEYLSNEQNLFPYTEKQIEII 166 +F Y Y ++D+ L+++ + +FY E L+ + Y++ + + + Sbjct: 116 LLRQDFSYADKYNYDIIDS---LSNKDVKDFYKRRDEKVKEILNKKYAHGSYSQSEKDYV 172 Query: 167 SQKMQKVTTPFLFKYDSGWEYLKIGLLHTIHLFFMFLAFILCEG--FSKNGSKGIDKVTL 224 QK++ PF F Y +GWE + + +L + + L +C F+ G D V L Sbjct: 173 ISLNQKISRPFYFNYFNGWEDI-LKMLFPVMAMLITLVTSICVAPIFALEYQTGADSVIL 231 Query: 225 STKESRRKLISYKLGAACVFSTIAYFVYIAVVLLFITAVYTLHGWDSSVQIGTI-TFYSM 283 ST+ + KLI K+ A + T YF + + L + Y +GW++S Q+ +I + Y Sbjct: 232 STRYGKNKLIIAKILAVLLCVTFIYFTVVIIFTLGMLWCYGTYGWNASFQVISIKSVYPY 291 Query: 284 NQLKEGLLYIAMGYFSTLVVTHLILFLS 311 + L+ LL +A+GY L + I+ LS Sbjct: 292 SVLEVYLLGVAIGYLVILAFSSFIMLLS 319 >Q24XC0.1 Q24XC0_DESHY Putative uncharacterized protein Length = 383 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 11/189 (5%) Query: 128 NLTDEQLANFYVDWKGSFTEYLSNEQNLFPYTEKQIEIISQKMQKVTTPFLFKYDSGWEY 187 ++ E+ ANFY ++YLS E P +Q I++K V PF + Y G Sbjct: 102 EISPEEAANFYEQRTERLSDYLSQEYKDSPDAARQALAINEK---VKAPFYYIYGVGDSD 158 Query: 188 LKIGLLHTIHLFFMFLAFILCEGFSKNGSKGIDKVTLSTKESRRKLISYKLGAACVFSTI 247 L I L M I FS + G D + T+ RR+L KL +A + +T Sbjct: 159 TSEYLTMCIFLLVMLCTVIAAPIFSADYQSGADDILRCTRHGRRRLAVVKLSSAILLTTA 218 Query: 248 AYFVYIAVVLLFITAVYTLHGWDS-----SVQIGTITFYSMNQLKEGLLYIAMGYFSTLV 302 + V I +L A + GW+S + I+F + + +L + G S L Sbjct: 219 IFAVCITAFILISHAAF---GWESLKTTLQLAFSAISFVPLTVGEANMLVVFSGLLSFLA 275 Query: 303 VTHLILFLS 311 LFLS Sbjct: 276 TVCFTLFLS 284 >B8FW79.1 B8FW79_DESHD Putative uncharacterized protein Length = 417 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 11/189 (5%) Query: 128 NLTDEQLANFYVDWKGSFTEYLSNEQNLFPYTEKQIEIISQKMQKVTTPFLFKYDSGWEY 187 ++ E+ ANFY ++YLS E P +Q I++K V PF + Y G Sbjct: 136 EISPEEAANFYEQRTERLSDYLSQEYKDSPDAARQALAINEK---VKAPFYYIYGVGDSD 192 Query: 188 LKIGLLHTIHLFFMFLAFILCEGFSKNGSKGIDKVTLSTKESRRKLISYKLGAACVFSTI 247 L I L M I FS + G D + T+ RR+L KL +A + +T Sbjct: 193 TSEYLTMCIFLLVMLCTVIAAPIFSADYQSGADDILRCTRHGRRRLAVVKLSSAILLTTA 252 Query: 248 AYFVYIAVVLLFITAVYTLHGWDS-----SVQIGTITFYSMNQLKEGLLYIAMGYFSTLV 302 + V I +L A + GW+S + I+F + + +L + G S L Sbjct: 253 IFAVCITAFILISHAAF---GWESLKTTLQLAFSAISFVPLTVGEANMLVVFSGLLSFLA 309 Query: 303 VTHLILFLS 311 LFLS Sbjct: 310 TVCFTLFLS 318 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,140,341,261 Number of extensions: 87367825 Number of successful extensions: 295781 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 295788 Number of HSP's successfully gapped: 13 Length of query: 401 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 263 Effective length of database: 1,760,596,133 Effective search space: 463036782979 Effective search space used: 463036782979 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)