BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0024.p (381 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0BW38.1 C0BW38_9CLOT Putative uncharacterized protein 79 1e-12 C4IXE9.1 C4IXE9_CLOBO Putative uncharacterized protein 69 1e-09 A0PYD6.1 A0PYD6_CLONN Lipoprotein, putative 63 4e-08 A5ZNM8.1 A5ZNM8_9FIRM Putative uncharacterized protein 61 1e-07 A6TPP9.1 A6TPP9_ALKMQ Putative uncharacterized protein 57 3e-06 >C0BW38.1 C0BW38_9CLOT Putative uncharacterized protein Length = 367 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 132/316 (41%), Gaps = 43/316 (13%) Query: 6 KLNRSKILNINVFGFIMALFLILTFYNLDIIK------TGYLNQ--ARYEVTDGTEYRYL 57 KL K++ V + + + ++L +D ++ T Y + A YE T +YR Sbjct: 11 KLIHKKLILAAVAAYTLVMIILLLNQRIDYLEVKTADGTTYHGRKAAAYEKTIADKYR-- 68 Query: 58 YQPEVLDEVKVNKILEKYRGLSLPEDRNTADVADLPALDMIIQVYGSDWTGIRDVSAEQF 117 L+ KVN IL+ PE+ + Y DW + +S+ F Sbjct: 69 ---GELNADKVNDILKAAIDSGSPEELS----------------YKGDWV-TKSISS-MF 107 Query: 118 YQDRSDIIRSAQEEAGSSREGNSNGTFAAASLSEPIRMGYAEGWKNVNSGMSQCXXXXXX 177 + D ++ EE S +P ++GY GW+ M Sbjct: 108 VWESWDKVKPLTEEDIESAYPQIK--------EQPFQIGYTRGWETAMLCMESMLLIAGF 159 Query: 178 XXXXXXXPIFNEDETLGMDGLVKSTRFGKRKLSRIRIINAFQLSSLLYLAAVAIYITPIF 237 P+F+E+ + GMD L+ +++ GK R +I + S LL L +A+ IF Sbjct: 160 LIVITVAPVFSEEYSSGMDALLLTSKKGKSTCIRAKITASVCFSVLLALFTIALPAGAIF 219 Query: 238 FMYGVQGADLPIQSSPQFFLSTV--EVNYFEQFLINLVIGYMAISLMTGITLLISVLVTQ 295 YGV+G D +Q++ TV ++ + ++ ++ + L+T ITLLIS L Sbjct: 220 IQYGVKGWDATVQAAAHGLFWTVPRTLSCLQAMILVIIFAVIGAVLLTCITLLISALSKN 279 Query: 296 VYTG--YALLLFTIAI 309 +T ALLL+ + I Sbjct: 280 AFTAVLVALLLYIVPI 295 >C4IXE9.1 C4IXE9_CLOBO Putative uncharacterized protein Length = 413 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 4/189 (2%) Query: 113 SAEQFYQDRSDIIRSAQE---EAGSSREGNSNGTFA-AASLSEPIRMGYAEGWKNVNSGM 168 +++QFY +R I+ E E + ++ A +LS P+ Y +GW + Sbjct: 139 NSKQFYGNRVKKIKDFLELDYEYSHFNKADAKAIMKEAKNLSTPMYYDYTDGWSKLMDNF 198 Query: 169 SQCXXXXXXXXXXXXXPIFNEDETLGMDGLVKSTRFGKRKLSRIRIINAFQLSSLLYLAA 228 +F ED GM +V T GK KL+ +I + SS+ YL Sbjct: 199 FFLNIGIILILCFSVCNVFTEDIYNGMSLVVLPTIHGKSKLAASKIKASIMFSSIAYLIF 258 Query: 229 VAIYITPIFFMYGVQGADLPIQSSPQFFLSTVEVNYFEQFLINLVIGYMAISLMTGITLL 288 ++ + YG +G + +Q P +FLS + +++ +++ +++G A+ M +TLL Sbjct: 259 NGLFAGSLLMFYGAEGWNCQLQIIPSYFLSIYNLKFYQGYILAIIVGLCALLFMITLTLL 318 Query: 289 ISVLVTQVY 297 +S ++ + + Sbjct: 319 LSNILKKAF 327 >A0PYD6.1 A0PYD6_CLONN Lipoprotein, putative Length = 412 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 12/295 (4%) Query: 85 NTADVADLPALDM-IIQVYGSDWTGIRDVSAEQFYQDRSDIIR---SAQEEAGSSREGNS 140 N ++ DL D Y D + + + FY+ R I+ + + GS E Sbjct: 110 NKDEILDLIRQDFSYADKYNYDIDSLSNKDIKSFYKRRDTKIKEILNKKYSHGSYSESEK 169 Query: 141 NGTFAAAS-LSEPIRMGYAEGWKNVNSGMSQCXXXXXXXXX-XXXXPIFNEDETLGMDGL 198 A + +S+P Y++GW+ + + PIF + G D + Sbjct: 170 KYVCAINNKISKPFYFDYSDGWEGIFRELFHIILISIIFVIGIWVAPIFALEYETGADSI 229 Query: 199 VKSTRFGKRKLSRIRIINAFQLSSLLYLAAVAIYITPIFFMYGVQGADLPIQSSPQFFLS 258 + STR+GK KL +I+ F ++ +Y V I+ + ++YG+ G + +Q F S Sbjct: 230 ILSTRYGKNKLIIAKILAVFLCTTFVYFGLVLIFTVCMLWIYGIHGWNASLQ--VIFIKS 287 Query: 259 TVEVNYFEQFLINLVIGYM-AISLMTGITLLISVLVTQVYTGYALLLFTIAISYGIQMSE 317 + E +L+ + +GY+ A++ + I +L S + T + LL I I + + E Sbjct: 288 VYPFSVLEGYLLGVALGYLVALAFSSFIMVLSSKIKTSSIMVISGLLIFIPIFFQ-RNKE 346 Query: 318 VFFLKHYVGNFLPMQIAEFNSFYTSFESYGGISTIIAVPSITVAVLFI-LLLFLP 371 L + F + F +F +S ++Y + ++ P +T + I + +F+P Sbjct: 347 NLVLNRFTNLFPGNAVNAFRNF-SSCDTYAFKNLVLLAPQLTAILSVIGICIFVP 400 >A5ZNM8.1 A5ZNM8_9FIRM Putative uncharacterized protein Length = 411 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/262 (20%), Positives = 108/262 (41%), Gaps = 5/262 (1%) Query: 114 AEQFYQDRSDIIRSAQEEAGSSREGNSNGTF---AAASLSEPIRMGYAEGWKNVNSGMSQ 170 A FY +R +++ E G + ++ A + P+ Y GWKN+ Sbjct: 138 AVDFYSNRIKNLKNWLETDGKDQFSEKEKSYLIRAYEKMKTPLYYDYQAGWKNLFQYSPS 197 Query: 171 CXXXXXXXXXXXXXPIFNEDETLGMDGLVKSTRFGKRKLSRIRIINAFQLSSLLYLAAVA 230 IF+ + L + + S+ +G+ K ++ + + +Y A + Sbjct: 198 IIMILTLVLGFLCAGIFSGEFQLKANAVFYSSYYGRNKAVWAKVKAGAIIITAIYWAVML 257 Query: 231 IYITPIFFMYGVQGADLPIQSSPQFFLSTVEVNYFEQFLINLVIGYMAISLMTGITLLIS 290 +Y + + GV GA+ PIQSS + S + +++++ ++ GY+ M +T+L+S Sbjct: 258 LYTMLVLGILGVDGANCPIQSSMSGWKSIYNITNAQEYILIVLGGYLGCLFMQSLTMLVS 317 Query: 291 VLVTQVYTGYALLLFTIAISYGIQMSEVFFLKHYVGNFLPMQIAEFNSFYTSFESYG-GI 349 + I + + + + L +G LP Q+ + N F Y G Sbjct: 318 AKTNSSVIAVIVPFILIFLPSFLSGTSLPLLNKILG-LLPDQMLQMNQVVKFFNLYEIGG 376 Query: 350 STIIAVPSITVAVLFILLLFLP 371 AVP + ++ +LLL +P Sbjct: 377 KVFCAVPILIISYSILLLLIVP 398 >A6TPP9.1 A6TPP9_ALKMQ Putative uncharacterized protein Length = 417 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 37/279 (13%) Query: 113 SAEQFYQDRSDIIRSAQEEAGSSRE--GNSNGTFAAASLSE---------PIRMGYAEGW 161 +A FY+ ++I QE+A RE G G A+ E Y+ GW Sbjct: 138 AASNFYRSANEI---GQEKANHYREVYGGEKGEALASKAEEMYGYLSDEYKAYYDYSWGW 194 Query: 162 KNVNSGMSQCXXXXXXXXXXXXXPIFNEDETLGMDGLVKSTRFGKRKLSRIRIINAFQLS 221 +++ + P+F+++ D L+ S ++GK K+ + +II AF LS Sbjct: 195 SRLHAMQTVLPFTVGVLLIVILSPMFSQEYARKTDSLILSGKYGKNKVIKAKIITAFLLS 254 Query: 222 SLLYLAAVAIYITPIFFMYGVQGADLPIQSSPQFFLSTVEVNYFEQFLINLVIGYMAISL 281 L ++ I I IF ++G +GA +Q+ Q + Y + + + ++ + Sbjct: 255 ILSWVMMQLINIVMIFTLFGAEGARSFLQNWAQ-NPNPYPFTYMTSYFVITAMSFLGLIF 313 Query: 282 MTGITLLISVL----VTQVYTGYALLLFTIAISY---GIQMSEVFFLKHYVGNFLPMQI- 333 +T L IS VT + T ++LF I +S G ++++F F+P ++ Sbjct: 314 LTSTILFISSRSKGSVTSLVTAGVVVLFPITLSVIFTGEIITKIFM-------FMPTKVL 366 Query: 334 ------AEFNSFYTSFESYGGISTIIAVPSITVAVLFIL 366 F++FY F+ + IA S+ +++L ++ Sbjct: 367 IGVDHFKNFDAFYI-FDKVIMLPWAIAFVSVALSILMVI 404 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,007,828,593 Number of extensions: 78167527 Number of successful extensions: 284712 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 284719 Number of HSP's successfully gapped: 15 Length of query: 381 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 244 Effective length of database: 1,770,017,148 Effective search space: 431884184112 Effective search space used: 431884184112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)