BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0023.p (531 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I0Y2.1 B8I0Y2_CLOCE Two component transcriptional regulator, A... 563 e-158 A7VQ28.1 A7VQ28_9CLOT Putative uncharacterized protein 247 2e-63 B0NF43.1 B0NF43_EUBSP Putative uncharacterized protein 239 6e-61 B0NDZ7.1 B0NDZ7_EUBSP Putative uncharacterized protein 229 4e-58 A7VR07.1 A7VR07_9CLOT Putative uncharacterized protein 228 1e-57 >B8I0Y2.1 B8I0Y2_CLOCE Two component transcriptional regulator, AraC family Length = 531 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 286/527 (54%), Positives = 393/527 (74%), Gaps = 7/527 (1%) Query: 1 MIVDDEPVIKKGLKCFVDWATLQCEVICEASNGIEAVEMLGHNDIDIIVTDIRMPGMDGL 60 MIVDDEPVIK+GL CFV+W L C+VIC+A NGI+A+E L + ++I++TDI+MPGMDGL Sbjct: 5 MIVDDEPVIKQGLLCFVNWEALDCKVICDAENGIDAMEKLAVHPVNIVLTDIKMPGMDGL 64 Query: 61 ALSDYVHQNFPQIKVIILTAFADFSYAQTAIQYEVVDFVVKTNPTEKIPGAIEKATRLLE 120 LS +++ +P IKVIILTAF+DF+YAQ AI+Y V+DFV+KTNPTEKIP AI KA L+ Sbjct: 65 ELSKLIYEKYPSIKVIILTAFSDFTYAQAAIKYNVLDFVIKTNPTEKIPDAIRKAKDLIA 124 Query: 121 KENEQKQKLRQLESKINDHLSEISEKFLKEAAHGLISDEASLLSRSRELGLQLENYFGVH 180 +E E+++KL+ +E K LSEI E F K+ +G+I ++ L S+ EL + +ENYF V Sbjct: 125 QEKEKEEKLKLMEEKAILRLSEIKENFFKDVFNGIIVNDTLLQSKLIELEISIENYFVVL 184 Query: 181 LEVE-----DTLGSPPTNEYHRFLASIRQFLALAFEERPTYIMPMEKNTLLAIVSMGDGN 235 ++ D+ SP +Y++F+ S+ L +AF+ P Y + M++N L+A++S + N Sbjct: 185 FDIHNASNGDSSISP--EDYNKFIHSVNNLLNMAFKSYPHYTVAMDRNLLVAVISFKNYN 242 Query: 236 AAVSTQALLTICNEILAMAENFRRYHLNIGISLMHRDVQTLSMAYREAREALQGSFYSDN 295 V TQ LL CNEIL+MA++F R+ ++IG+S MH+ VQ LS+AY+EAREAL+G FY++N Sbjct: 243 VPVCTQTLLMTCNEILSMADSFMRFTISIGLSQMHQKVQALSVAYQEAREALRGGFYNNN 302 Query: 296 YVAVYMPHTSQTLTPGAPPHHTAERIAEFLQQGQNDLAIDQLERLLESYRNIKEPIENVK 355 +V+V++P T + PH+ A++I L+ AI LE LLE YR+ KEPIEN+K Sbjct: 303 HVSVFVPRTPPIPSLINQPHYIADKIVGSLKLENPSEAIISLENLLEEYRSNKEPIENIK 362 Query: 356 VACLLIGSYCFRLLSASHPFAPELDESQSAVYKQIQESKSIQLLADILKRLIRSCSRAVA 415 V+C+LI SYC+RL+++ FAPEL +S+ VYKQIQ S++IQ L +IL++L+ + S+ V Sbjct: 363 VSCMLIASYCYRLVASYKLFAPELADSEPEVYKQIQSSRNIQNLLNILRQLVENVSQVVE 422 Query: 416 FNDKQPNYIVIECQKYIKEHYNQNLNLQIIADHIHINSSYLSRLYKKVTNESIIDAINKY 475 N + + +V E QKYI+++YN+N++LQ IADHIH+NSSYLSRLYKK T ESI+DAINKY Sbjct: 423 NNGNKFSCLVKETQKYIRDNYNKNISLQSIADHIHVNSSYLSRLYKKETGESIVDAINKY 482 Query: 476 RIEMAKKLLRNPASKVFEVAEAVGIETPAYFTHVFSKYTGMSPKEYK 522 RIE AKKLL++P KVFEVA AVGIE PAYFTHVF+KYTGMSPKEYK Sbjct: 483 RIENAKKLLKDPVYKVFEVACAVGIEDPAYFTHVFTKYTGMSPKEYK 529 >A7VQ28.1 A7VQ28_9CLOT Putative uncharacterized protein Length = 532 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 169/533 (31%), Positives = 277/533 (51%), Gaps = 28/533 (5%) Query: 1 MIVDDEPVIKKGLKCFVDWATLQCEVICEASNGIEAVEMLGHN--DIDIIVTDIRMPGMD 58 +I DDE +I++G++ VDW L C ++ +NG E + L + +DII++DIRM G D Sbjct: 6 LIADDEEIIRQGIEFLVDWERLDCSIVERCANGQEVIRFLEQSPSGVDIIISDIRMAGAD 65 Query: 59 GLALSDYVHQNFPQIKVIILTAFADFSYAQTAIQYEVVDFVVKTNPTEKIPGAIEKATRL 118 GL ++ YV QN ++VI LTA+ADFSYA+TAI+Y V DFV+K++ +E +P A+EKA L Sbjct: 66 GLDIARYVSQNQIPVQVIFLTAYADFSYAKTAIEYSVTDFVLKSDISEGLPRAVEKAKAL 125 Query: 119 LEKENEQKQKLRQLESKINDHLSEISEKFLKEAAHGLISDEASLLSRSRELGLQLENYFG 178 L ++ E+++K E + E L+ A G R+ + E Y Sbjct: 126 LAQKQEEQKKRLDAEKLSRQNRRYHLESLLRSVALGT-------GPRAYDNLKDEEPYCV 178 Query: 179 VHLEVEDTLGSPPTNEYHRFLASIRQ--FLALAFEERPTYIMPMEKNTLLAIVSMGDGNA 236 V EV D+ + P++ AS+ + + A + T ++ + I+ + Sbjct: 179 VTFEVTDSPQAVPSSG----PASMAEPHIIRTALMDYDTVMIGLSSRQCCGIIFLDKSRH 234 Query: 237 AVSTQALLTICNEILAMAENFRRYHLNIGISLMHRDVQTLSMAYREAREALQGSFYSDNY 296 L+ ++ + + E + + G+S H +Q L AY+++ AL FYS N Sbjct: 235 TAG--GLVKALHDTIHIVEEYLKADAFAGVSREHLRMQDLEAAYQQSILALNNVFYSRNR 292 Query: 297 VAVYMPH-TSQTLTPGAPP-HHTAERIAEFLQQGQNDLAIDQLERLLESYRNIKEPIENV 354 V + P T +P P E ++E L+ + + LE S+ EP Sbjct: 293 VNCFDPKITDGKESPVLPSIQQLIESLSEALRSDSPETILGMLEDYCASFIKSGEPFHIF 352 Query: 355 KVACLLIGSYCFRLLSASHPFAPELDE-----SQSAVYKQIQESKSIQLLADILKRLIRS 409 K L + + +L+A +DE + + Y ++ SK+ + + L++ + Sbjct: 353 KKNMLSV----YTVLTADVKQMDMMDEWEMQKADESFYTTVETSKTFFGIYESLRKYLAL 408 Query: 410 CSRAVAFNDKQPNYIVIECQKYIKEHYNQNLNLQIIADHIHINSSYLSRLYKKVTNESII 469 R + ++ + YI ++YNQN++LQ IAD ++ +LSRLY+K T S+I Sbjct: 409 YLRLRENFSGTQSSLIRQVNSYIHKNYNQNISLQTIADTFLVSCGHLSRLYRKETGVSLI 468 Query: 470 DAINKYRIEMAKKLLRNPASKVFEVAEAVGIETPAYFTHVFSKYTGMSPKEYK 522 AIN RIE+AK+LL++P ++VFEVA AVGIE P YFTH+F++ TG+SP Y+ Sbjct: 469 SAINNRRIEVAKRLLKDPRNRVFEVARAVGIEEPTYFTHLFTQVTGVSPSAYR 521 >B0NF43.1 B0NF43_EUBSP Putative uncharacterized protein Length = 519 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 150/529 (28%), Positives = 279/529 (52%), Gaps = 28/529 (5%) Query: 1 MIVDDEPVIKKGLKCFVDWATLQCEVICEASNGIEAVEMLGHNDIDIIVTDIRMPGMDGL 60 +I DDEP+++K ++ ++W L+C++I A+NG E +EMLG DI++ D++MPG+ G+ Sbjct: 6 LIADDEPIVRKAMQTLIEWEKLECDLIGFAANGQEVMEMLGRAIPDILILDVQMPGVSGI 65 Query: 61 ALSDYVHQNFPQIKVIILTAFADFSYAQTAIQYEVVDFVVKTNPTEKIPGAIEKATRLLE 120 L+ YV + KVI+LTA+ADFSYAQ+A++Y+V+D+V+KT + + AIEKA Sbjct: 66 ELAKYVWEKKLSCKVILLTAYADFSYAQSAVKYDVIDYVIKTGAFDDLVVAIEKA----- 120 Query: 121 KENEQKQKLRQLESKINDHLSEISEKFLKEAAHGLISDEASLLSRSRELGLQL-ENYFGV 179 + K KL + E + + E F K G + + + ++ + + L E Y + Sbjct: 121 ---KDKIKLTEFERNVESK-KVLKENFFKSVFDGSLYLQEDIRKKADKADISLVEGYLVI 176 Query: 180 --HLEVEDTLGSPPTNEYHRFLASIRQFLALAFEERPTYIMPMEKNTLLAIVSMGDGNAA 237 H + T +S++ F + F+E+ Y + ++K+ + I+ D + Sbjct: 177 VCHFRAREDKERSYT------YSSLQNFFHMVFDEKLVYSLAVDKDVMAIIL---DHISM 227 Query: 238 VSTQALLTICNEILAMAENFRRYHLNIGISLMHRDVQTLSMAYREAREALQGSFYSD--- 294 + + C E++ + +NF + ++ +GIS + D+ L Y EA A SF++D Sbjct: 228 DFYEDIHKKCEEVIEIMDNFMKMYVYMGISNLGNDIFELKQRYEEAESAEGESFFNDKSK 287 Query: 295 -NYVAVYMPHTSQTLTPGAPPHHTAERIAEFLQQGQNDLAIDQLERLLESYRNIKEPIEN 353 NY T + L E + ++++G ++ A+ + + +++ + Sbjct: 288 INYFQERKKDTKELL---EHIEKGVESLQYWMKKGNSEEAMKEFDNIIKYQMESGGSVAT 344 Query: 354 VKVACLLIGSYCFRLLSASHPFAPELDESQSAVYKQIQESKSIQLLADILKRLIRSCSRA 413 + + I + ++LS ++ + + K I + I I++ +I S + Sbjct: 345 ILEVGICIYASSKKMLSDMEKTLYDITLQKESFSKSIYRCRHISEYYSIMRTVIESTAEY 404 Query: 414 VAFNDKQPNYIVIECQKYIKEHYNQNLNLQIIADHIHINSSYLSRLYKKVTNESIIDAIN 473 + + N ++ EC+KYI E+Y + + + I+ +I ++ SYLSR++K T +II+ IN Sbjct: 405 IKIAASRRNILIYECEKYIDENYERGITVSEISRYIGVSMSYLSRIFKDETGNTIINYIN 464 Query: 474 KYRIEMAKKLLRNPASKVFEVAEAVGIETPAYFTHVFSKYTGMSPKEYK 522 + +I+ AK+ L K++E+AE +G E YF++ F KYTG+SPKEYK Sbjct: 465 EKKIQKAKEYLGGTDMKIYEIAEKLGFENTTYFSYFFKKYTGISPKEYK 513 >B0NDZ7.1 B0NDZ7_EUBSP Putative uncharacterized protein Length = 515 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 158/533 (29%), Positives = 264/533 (49%), Gaps = 40/533 (7%) Query: 1 MIVDDEPVIKKGLKCFVDWATLQCEVICEASNGIEAVEMLGHNDIDIIVTDIRMPGMDGL 60 ++VDDE ++KG+ F++W +L C+V+ NG+ A++ L ++D++I++TDI+MPG DGL Sbjct: 6 LVVDDEATMRKGITNFMNWDSLDCQVVGAVENGLAAMDFLKNSDVNIVLTDIKMPGADGL 65 Query: 61 ALSDYVHQNFPQIKVIILTAFADFSYAQTAIQYEVVDFVVKTNPTEKIPGAIEKATRLLE 120 L+ ++H +PQIKVIILT +ADF YA+TAI+Y+VV F+VK + A++KA Sbjct: 66 ELARFIHDEYPQIKVIILTGYADFEYAKTAIKYDVVSFIVKPTNKRDLFDAVKKA----- 120 Query: 121 KENEQKQKLRQLESKINDHLSEISEKFLKEAAHGLISDEASLLSRSRELGLQLENYFGVH 180 EQ R S + ++ + ++ L E + S + R +L L L +Y+ Sbjct: 121 --QEQIIISRNRSSIAKEEIAFLRDQLLLEMT--TMPYVPSFVKRLSKLNLSLNDYYVAA 176 Query: 181 LEVEDTLGSPPTNEYHRFLASIRQFLALAFEERPTYIMPMEKNTLLAIVSMGDGNAAVST 240 ++ P N+ I + +E+ N ++ I + + Sbjct: 177 FQL-----VPLEND-------ITALKKIIIDEKKNAYCYRYNNLIITIYFLEKFEGQIP- 223 Query: 241 QALLTICNEILAMAENFRRYHLNIGISLMHRDVQTLSMAYREAREALQGSFYSDNYVAVY 300 + +L C EI + E H+ IGIS HR A E+ AL +FYS+ + ++ Sbjct: 224 EHILQNCQEISTITEMLDSKHVAIGISHCHRGAADFRSAVAESIHALTQNFYSEKNIFLF 283 Query: 301 MPHTSQTLTPGAPPHHTAER---IAEFLQQGQNDLAIDQ---LERLLESYR-NIKEPIEN 353 + TAE + EF N L D L+ + ++ N IE Sbjct: 284 -----SDCVESSEYDLTAENTFDLFEFENHLFNRLFEDAEQVLKNIFSKFKSNFVSSIE- 337 Query: 354 VKVACLLIGSYCFRLLSASHPFAPELDESQSAVYKQIQESKSIQLLADILKRLIRSCSRA 413 K C I C+R+L P S + +I + I +L + + L + Sbjct: 338 TKNICFQIYYICYRVLKKREAIPP-----SSELLARIHSAPDIFILENTVNELFQYTKNQ 392 Query: 414 VAFNDKQPNYIVIECQKYIKEHYNQNLNLQIIADHIHINSSYLSRLYKKVTNESIIDAIN 473 ++ N I+ K+I ++ L+L++IA+H+HI++S+LSR +KK +ES+ + +N Sbjct: 393 FNGSNGTQNRIIENTIKFIHQNLATALSLEVIAEHLHISASHLSRTFKKYCDESLTEYVN 452 Query: 474 KYRIEMAKKLLRNPASKVFEVAEAVGIETPAYFTHVFSKYTGMSPKEYKLNYS 526 K RIE AK+ L++ +E+A VG YF+ +F KYTG SP EY+ Y+ Sbjct: 453 KTRIEKAKEYLKDSNMLTYEIANQVGYNDATYFSSIFKKYTGFSPSEYRQKYA 505 >A7VR07.1 A7VR07_9CLOT Putative uncharacterized protein Length = 515 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 150/538 (27%), Positives = 276/538 (51%), Gaps = 47/538 (8%) Query: 1 MIVDDEPVIKKGLKCFVDWATLQCEVICEASNGIEAVEMLGHNDIDIIVTDIRMPGMDGL 60 ++ DDE VI+KG+ +DW L CE++ E ++G + ++ L N DI++TDI+MP + G+ Sbjct: 6 IVADDEDVIRKGIVYLIDWDKLNCEIVQECTDGRQVLKYLEKNTADIVITDIKMPKLSGI 65 Query: 61 ALSDYVHQNFPQIKVIILTAFADFSYAQTAIQYEVVDFVVKTNPTEKIPGAIEKAT---- 116 L + + + +K+I++TA+ DF +A+ A++Y VDFVVK + +P A++KA Sbjct: 66 ELMEEIDKKHKGLKMILVTAYTDFEFARKALRYGAVDFVVKNDIITDLPKAVKKAVWQYE 125 Query: 117 ---------RLLEKENEQKQKL---RQLESKINDHLSEISEKFLKEAAHGLISDEASLLS 164 ++ E+E + Q L SK + +I L + ++ + S E +LL Sbjct: 126 TEKKEREKEQISEREYQNIQGYVLESLLLSKALNSPEDIERYGLNDRSYCVCSCEVALLD 185 Query: 165 RSRELGLQLENYFGVHLEVEDTLGSPPTNEYHRFLASIRQFLALAFEERPTYIMPMEKNT 224 + +L + ++ FL + + +I+ + + Sbjct: 186 KKWDL--------------------------QAIVQMLKNFLDIIENKHDYHIVNVHSSG 219 Query: 225 LLAIVSMGDGNAAVSTQALLTICNEILAMAENFRRYHLNIGISLMHRDVQTLSMAYREAR 284 + I+S ++ + + T+C EIL + + ++ G+S + DV LS + EA Sbjct: 220 MSLIIS-EPKETGLALRDVTTMCGEILRLVDELMGINIKFGVSTIIHDVTELSRTFHEAA 278 Query: 285 EALQGSFYSDNYVAVYMPHTSQTLTPGAPPHHTAERIAEFLQQGQNDLAIDQLERLLESY 344 AL + S N + +Y+ + + + T +I + L D A + LE++ + Sbjct: 279 MALSRAADSGNEIILYVEESESSGASHLNEYGT--KITDALFDKNPDAAKELLEQMKQEI 336 Query: 345 RNIKEPIENVKVACLLIGSYCFRLLSASHPFAPELDESQSAVYKQIQESKSIQLLADILK 404 +I+ P+ K+ + + S FR + + ++ +S Y +I +S ++ L + + Sbjct: 337 TDIRYPLHKAKIKMINLCSAVFRRFGEIY-VSDTAEDMESRFYLRISQSTTLYSLFQVCR 395 Query: 405 RLIRSCSRAVAFNDKQPNYIVIECQKYIKEHYNQNLNLQIIADHIHINSSYLSRLYKKVT 464 +I ++ ++ ++ + +V + +YI +Y N+ LQ IAD IHI+S+Y+SRL++ T Sbjct: 396 EMIDETNQVISGRLEKHD-LVDQISRYISANYQSNITLQDIADQIHISSAYVSRLFRNKT 454 Query: 465 NESIIDAINKYRIEMAKKLLRNPASKVFEVAEAVGIETPAYFTHVFSKYTGMSPKEYK 522 +I +AIN+ RI+ AK LL NP KV+E+A+ VG E AYFT VF+KY G SP EY+ Sbjct: 455 GITITEAINRARIDQAKLLLGNPEYKVYEIAQMVGFEDAAYFTSVFTKYVGCSPSEYR 512 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,909,579,193 Number of extensions: 113315381 Number of successful extensions: 466747 Number of sequences better than 1.0e-05: 6876 Number of HSP's gapped: 472147 Number of HSP's successfully gapped: 7480 Length of query: 531 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 390 Effective length of database: 1,732,333,088 Effective search space: 675609904320 Effective search space used: 675609904320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)