BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0020.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I0X8.1 B8I0X8_CLOCE Binding-protein-dependent transport system... 449 e-124 A7VQ21.1 A7VQ21_9CLOT Putative uncharacterized protein 293 2e-77 A7VR05.1 A7VR05_9CLOT Putative uncharacterized protein 286 2e-75 B0NDZ4.1 B0NDZ4_EUBSP Putative uncharacterized protein 249 2e-64 C2KZ48.1 C2KZ48_9FIRM ABC superfamily ATP binding cassette trans... 233 1e-59 >B8I0X8.1 B8I0X8_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 290 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/287 (73%), Positives = 248/287 (86%) Query: 4 KNKGYITLFLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSDF 63 KNKGYI LFLLPT+VLF++VY VSI ILF TSFTEWS+G KPVFIGL NYI +FT+DSDF Sbjct: 3 KNKGYIALFLLPTLVLFLIVYTVSIAILFSTSFTEWSTGTKPVFIGLKNYIDMFTNDSDF 62 Query: 64 RKSFLNTGLWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLFLC 123 R+S LNT +W+ LQST+HV IG FAIILNMKEFYWKFARTV+M PNIISGAAVGMLFLC Sbjct: 63 RRSLLNTCIWIFLQSTVHVVIGVLFAIILNMKEFYWKFARTVFMIPNIISGAAVGMLFLC 122 Query: 124 MLNPDFGAVNSIVRLFGHADYAQNWFMDYTTAFFSVTMTWLPYAAVVTILILAEIAAIPD 183 +LNP+FGAVNSIVRL G D++QNWFMD+ T+FFSVTMTWLPYAA+VTIL+LAEIAAIP+ Sbjct: 123 ILNPEFGAVNSIVRLLGFEDFSQNWFMDHKTSFFSVTMTWLPYAAIVTILVLAEIAAIPE 182 Query: 184 SLFESARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNETM 243 ++E+ARIDGA+E+KI YI+LP+LRNIIGTCVIL+GTSMLQK+DII+MTTGGGPGN TM Sbjct: 183 GIYEAARIDGANEVKINIYIVLPLLRNIIGTCVILSGTSMLQKLDIIVMTTGGGPGNLTM 242 Query: 244 NLPIYIYKTALMENNFGYSNSXXXXXXXXXXXXXXXCRNLFRIGSSQ 290 NLP+YIYKTALM+NNFGYSN+ R +F+IGSS+ Sbjct: 243 NLPMYIYKTALMDNNFGYSNAIGSFLVVFGIMLVLLYRRIFKIGSSE 289 >A7VQ21.1 A7VQ21_9CLOT Putative uncharacterized protein Length = 274 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 144/248 (58%), Positives = 192/248 (77%), Gaps = 1/248 (0%) Query: 17 VVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSDFRKSFLNTGLWVLL 76 +VLF++V+AV +V+L G+SF W +G F G+ NYI+L D+ FR+ FLN +W+LL Sbjct: 1 MVLFLLVFAVPVVVLVGSSFCNWRTGDPITFNGIGNYIELIFHDNSFRQGFLNNVVWILL 60 Query: 77 QSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLFLCMLNPDFGAVNSIV 136 Q TIHVAIG FA+IL + FYWKFART YM P+IIS AA+GMLFLC+ NP+FG +NSIV Sbjct: 61 QGTIHVAIGVLFALILARRPFYWKFARTAYMIPSIISSAAMGMLFLCIFNPEFGMINSIV 120 Query: 137 RLFGHADYAQNWFMDYTTAFFSVTMTWLPYAAVVTILILAEIAAIPDSLFESARIDGASE 196 R+F DY NWFM Y TAF +VT+TW+PYAA+ T+L+L EI +I S+ E+A +DGAS Sbjct: 121 RMF-LPDYDHNWFMSYDTAFLTVTLTWMPYAAITTLLVLTEIISIDRSIIEAATVDGASN 179 Query: 197 LKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNETMNLPIYIYKTALME 256 ++ IILP+L+NIIGT VIL ++ML+K+DIIM+TT GGPG+ TMNLP+Y+Y+TA+ E Sbjct: 180 FQLNTRIILPLLKNIIGTSVILEASNMLKKLDIIMLTTRGGPGDTTMNLPMYVYRTAMTE 239 Query: 257 NNFGYSNS 264 NNFG +N+ Sbjct: 240 NNFGMANA 247 >A7VR05.1 A7VR05_9CLOT Putative uncharacterized protein Length = 288 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/290 (47%), Positives = 198/290 (68%), Gaps = 2/290 (0%) Query: 2 VRKNKGYITLFLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDS 61 ++ K ++ +FLLP ++F +VYAV +V+L TSFT+W + P F G+ NYI+LF +S Sbjct: 1 MKIKKKWLVIFLLPATLIFALVYAVPVVMLTATSFTDWVAVSSPHFNGIDNYIKLF-QNS 59 Query: 62 DFRKSFLNTGLWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLF 121 F + +NT +W++LQST+H+ IG A+IL K+FYWKF RTVYMFPNIIS AA+GMLF Sbjct: 60 QFLHATVNTLIWMVLQSTVHIFIGVLTALILARKKFYWKFTRTVYMFPNIISSAAIGMLF 119 Query: 122 LCMLNPDFGAVNSIVRLFGHADYAQNWFMDYTTAFFSVTMTWLPYAAVVTILILAEIAAI 181 + +LNP FG VN + G + NWF + +TAFF+VT+TWLP+AA VTIL++AE+ ++ Sbjct: 120 VMLLNPSFGIVNKGLEALGFQNLP-NWFSNSSTAFFAVTITWLPFAATVTILVMAEMTSL 178 Query: 182 PDSLFESARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNE 241 S+ E+A++DGA+E + IILP+++NIIGT +L TSMLQK+DI+MMTT GGPG+ Sbjct: 179 DVSILEAAKVDGATEFQTTIRIILPLMKNIIGTTTVLGATSMLQKLDILMMTTKGGPGDV 238 Query: 242 TMNLPIYIYKTALMENNFGYSNSXXXXXXXXXXXXXXXCRNLFRIGSSQN 291 T+NLP ++Y TA FG +NS ++R+G + Sbjct: 239 TLNLPYFVYNTAFSAKQFGLANSVGVLMIIMGLIVVGIINRIYRVGKQDD 288 >B0NDZ4.1 B0NDZ4_EUBSP Putative uncharacterized protein Length = 297 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/266 (48%), Positives = 174/266 (65%), Gaps = 3/266 (1%) Query: 1 MVRKNKG-YITLFLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTD 59 M KN+G +I LF +P ++LF +VYA I+ + TSF +++ P F GL N+ Q+F Sbjct: 1 MKVKNRGVWIVLFTMPCMILFAIVYAAPIITVLYTSFCNYTTFSGPEFAGLKNFTQIF-G 59 Query: 60 DSDFRKSFLNTGLWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGM 119 D DF S NT +WVLLQST HV +G A++L K WK RT YM PNII AA G+ Sbjct: 60 DKDFLMSIRNTLVWVLLQSTFHVTLGLVMALVLRRKPKGWKIVRTAYMIPNIIPTAATGV 119 Query: 120 LFLCMLNPDFGAVNSIVRLFG-HADYAQNWFMDYTTAFFSVTMTWLPYAAVVTILILAEI 178 +F +LNP FG VN + G H D N F + AF++VT+TW+ Y+ TI+ LAE+ Sbjct: 120 MFTLLLNPTFGVVNPFLEAIGIHMDQVPNLFGNSRYAFWTVTVTWMLYSGFNTIIFLAEM 179 Query: 179 AAIPDSLFESARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGP 238 AI ++E+AR+DGA ++ YI LP++RNI GTCV LA +M+ + DII MTT GGP Sbjct: 180 GAIDKEIYEAARVDGARPWQLDRYITLPLMRNIFGTCVTLASVAMVSQFDIIYMTTKGGP 239 Query: 239 GNETMNLPIYIYKTALMENNFGYSNS 264 GN T+NLPIY+YK A +ENN+G +N+ Sbjct: 240 GNTTLNLPIYLYKAATLENNYGKANA 265 >C2KZ48.1 C2KZ48_9FIRM ABC superfamily ATP binding cassette transporter, membrane protein Length = 292 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/261 (44%), Positives = 175/261 (67%) Query: 3 RKNKGYITLFLLPTVVLFIVVYAVSIVILFGTSFTEWSSGRKPVFIGLANYIQLFTDDSD 62 R K I LF LPT++LF+++Y V ++I+F TSF EW SG +GL NY FT D Sbjct: 4 RNKKWMIILFSLPTMILFMMLYLVPMLIVFITSFFEWKSGGVFHPVGLKNYFLGFTADPR 63 Query: 63 FRKSFLNTGLWVLLQSTIHVAIGTAFAIILNMKEFYWKFARTVYMFPNIISGAAVGMLFL 122 +S NT +W +LQ HV IGT A+IL + WK RT++M PN+IS AA+ ++FL Sbjct: 64 MLQSIFNTVIWTILQGIFHVFIGTVLALILAKRFRGWKIFRTIFMIPNVISSAALAVIFL 123 Query: 123 CMLNPDFGAVNSIVRLFGHADYAQNWFMDYTTAFFSVTMTWLPYAAVVTILILAEIAAIP 182 + N +G VNS + +NWF D +AF +VT WL Y+ ++ I++LA + +IP Sbjct: 124 NVFNAKYGLVNSFLSSILGKPITKNWFFDPNSAFLTVTSMWLLYSGMIVIIVLAGLFSIP 183 Query: 183 DSLFESARIDGASELKIIFYIILPMLRNIIGTCVILAGTSMLQKMDIIMMTTGGGPGNET 242 + ++E+A+IDGAS+ + I LP++R ++GT VI+A TSML++ ++I +TT GGPG+ T Sbjct: 184 EDIYEAAKIDGASDFVMDISIRLPLIRPVLGTAVIIAATSMLREFELIFLTTNGGPGDLT 243 Query: 243 MNLPIYIYKTALMENNFGYSN 263 +NLP+Y+YKT+L E+N+GY+N Sbjct: 244 LNLPLYLYKTSLKESNYGYAN 264 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,593,520,352 Number of extensions: 62055577 Number of successful extensions: 226224 Number of sequences better than 1.0e-05: 5386 Number of HSP's gapped: 219754 Number of HSP's successfully gapped: 5387 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)