BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0019.p (245 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I0X7.1 B8I0X7_CLOCE Binding-protein-dependent transport system... 377 e-103 A7VR04.1 A7VR04_9CLOT Putative uncharacterized protein 315 2e-84 A7VQ22.1 A7VQ22_9CLOT Putative uncharacterized protein 302 2e-80 A5Z5S1.1 A5Z5S1_9FIRM Putative uncharacterized protein 251 3e-65 B0NDZ3.1 B0NDZ3_EUBSP Putative uncharacterized protein 246 9e-64 >B8I0X7.1 B8I0X7_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 279 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/245 (80%), Positives = 219/245 (89%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 ++SFK+NAEILN S+GWP +F FSNY+MAFKIAPL++FY+NSV V +FGT GM+ Sbjct: 35 LSSFKSNAEILNYSIGWPKNFGFSNYMMAFKIAPLAQFYLNSVWVAVFGTILNLFILGMS 94 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 YV ARF F+ K LL+G SLSLLIPGAAMLQPLYLTVNTLGLYDK+IGLIIVYAGFGLP Sbjct: 95 AYVTARFDFKGKKLLIGVLSLSLLIPGAAMLQPLYLTVNTLGLYDKLIGLIIVYAGFGLP 154 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 SLYI+SSYF TIPKEMEESAYLDGA FI+TF IILPISKPGFGTA V+QFLLCWNEFQ Sbjct: 155 ASLYIISSYFHTIPKEMEESAYLDGAGFIRTFVSIILPISKPGFGTAAVLQFLLCWNEFQ 214 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 FAI LTTGN+SRTLPLALYYFKSQFASDYGVMFAAT++VI+PSI+VY+LLQKQVVSGLAA Sbjct: 215 FAITLTTGNKSRTLPLALYYFKSQFASDYGVMFAATVIVIIPSIIVYVLLQKQVVSGLAA 274 Query: 241 GAVKG 245 GAVKG Sbjct: 275 GAVKG 279 >A7VR04.1 A7VR04_9CLOT Putative uncharacterized protein Length = 285 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/244 (61%), Positives = 193/244 (79%) Query: 2 ASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMAG 61 +SFKTN EIL+ SLG P++F F NY A KIAP+ +FY+NS+IV + T MA Sbjct: 42 SSFKTNKEILSGSLGLPAAFNFDNYADALKIAPIPQFYLNSIIVAVVATVLNVFLLSMAA 101 Query: 62 YVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLPV 121 YV+ARFQ++ K FS+ LLIPGAA+LQPLY T+ +GLYD +IGLI+VY FGLP Sbjct: 102 YVIARFQWKGKTFFRLLFSVGLLIPGAALLQPLYQTMIAMGLYDSLIGLILVYIAFGLPT 161 Query: 122 SLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQF 181 ++Y++SSYF+TIPKE+EESAYLDG+ F +TF I++PI+KP GTA V++FL+ WNEFQF Sbjct: 162 TIYVMSSYFMTIPKELEESAYLDGSGFFKTFSLIVIPIAKPALGTAAVLEFLVAWNEFQF 221 Query: 182 AIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAAG 241 A+ LT N +RTLP+ALYYFKSQFAS+YG MFAAT++VI+PSI+VYI LQ+QVVSGL+AG Sbjct: 222 ALTLTASNSNRTLPIALYYFKSQFASNYGAMFAATILVIIPSIIVYIALQEQVVSGLSAG 281 Query: 242 AVKG 245 AVK Sbjct: 282 AVKA 285 >A7VQ22.1 A7VQ22_9CLOT Putative uncharacterized protein Length = 282 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/245 (59%), Positives = 185/245 (75%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 M+SFK+N EILN++L P+ + NYV AF++ P++ FY NS +V + T M+ Sbjct: 38 MSSFKSNTEILNSALSLPTVWSLKNYVTAFEMVPIATFYGNSAVVAVVATLLNVLVLSMS 97 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 YVLARF+F+ L F L+LLIP AA+LQPLYLT+ TLG YD+++GLII YA F LP Sbjct: 98 SYVLARFRFKGSRKLKSLFGLALLIPSAALLQPLYLTMKTLGFYDQLLGLIICYAAFSLP 157 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 VS+YIL+SY+LTIP E+EE+AY+DGA F TF+R+I P++KP T GV+ FL WNEFQ Sbjct: 158 VSMYILTSYYLTIPLELEEAAYIDGAGFYYTFWRVIFPLAKPAMATCGVLAFLGAWNEFQ 217 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 A+ LT+ + RTLP+AL YFKSQFASDYG MFAATMVVI+PSI+V+ILLQKQV GL + Sbjct: 218 IAMTLTSSTEKRTLPIALLYFKSQFASDYGAMFAATMVVIIPSIVVFILLQKQVTEGLVS 277 Query: 241 GAVKG 245 GAVKG Sbjct: 278 GAVKG 282 >A5Z5S1.1 A5Z5S1_9FIRM Putative uncharacterized protein Length = 296 Score = 251 bits (642), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 114/245 (46%), Positives = 175/245 (71%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 ++SFKT AEI +++ P SF F NYV AFK AP+ +++NS+I+ + M Sbjct: 52 LSSFKTYAEINTSAIALPKSFNFKNYVDAFKYAPIQEYFLNSIIIVLVSVAVTVCFVAMC 111 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 YV+AR+ F+ K +L+ S SL++P A+ QPL+ TLGLYD GLIIVYA G+P Sbjct: 112 AYVVARYNFKLKTILVLLISASLMLPAQAISQPLFAIFKTLGLYDTKFGLIIVYAAMGIP 171 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 +S +++ SY+ TIP +EESAY+DGA+FIQ+F +++LP++KPG T ++QF+ WNEF Sbjct: 172 MSFFVMVSYYKTIPVALEESAYIDGATFIQSFTKVVLPLAKPGLATIAMLQFINTWNEFY 231 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 FA++LT+G+ +RT+P+AL Y+ FA++Y +FAA ++ ++P+I+++I+LQKQV+ + A Sbjct: 232 FALMLTSGDTARTVPIALNYYLGTFANNYSALFAAVIITVLPTIIIFIILQKQVMESMTA 291 Query: 241 GAVKG 245 GAVKG Sbjct: 292 GAVKG 296 >B0NDZ3.1 B0NDZ3_EUBSP Putative uncharacterized protein Length = 280 Score = 246 bits (629), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 113/245 (46%), Positives = 175/245 (71%) Query: 1 MASFKTNAEILNNSLGWPSSFRFSNYVMAFKIAPLSRFYINSVIVGIFGTXXXXXXXGMA 60 ++SFKT AEI +++L WPSSF NY AF AP++++++NSVI+ M Sbjct: 36 ISSFKTYAEINSSALSWPSSFNLDNYKAAFMYAPIAKYFLNSVIIVGTSVLVTVTLVAMC 95 Query: 61 GYVLARFQFRFKNLLMGAFSLSLLIPGAAMLQPLYLTVNTLGLYDKVIGLIIVYAGFGLP 120 Y+++RF F+ K L++ S SL++P A+ QPL+ LG++D +GLIIVY+ G+P Sbjct: 96 AYIISRFNFKLKTLIILLISASLMLPAQAISQPLFAIFQKLGIFDTKLGLIIVYSAMGIP 155 Query: 121 VSLYILSSYFLTIPKEMEESAYLDGASFIQTFFRIILPISKPGFGTAGVMQFLLCWNEFQ 180 +S ++++SY+ TI +EESAY+DGASF+QTF+ IILP++KPG T ++QF+ WNEF Sbjct: 156 MSFFVMTSYYKTISMALEESAYIDGASFLQTFWHIILPLAKPGLVTIALLQFINTWNEFY 215 Query: 181 FAIILTTGNQSRTLPLALYYFKSQFASDYGVMFAATMVVIVPSILVYILLQKQVVSGLAA 240 FA++LT+G+ +RT+P+AL Y+ FA++Y +FAA ++ ++P+I V+I+LQ+QV+ L A Sbjct: 216 FALMLTSGDTARTVPIALNYYMGTFANNYSALFAAVVMTVLPTIFVFIILQRQVMESLTA 275 Query: 241 GAVKG 245 GAVKG Sbjct: 276 GAVKG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,306,966,986 Number of extensions: 52232152 Number of successful extensions: 167560 Number of sequences better than 1.0e-05: 6825 Number of HSP's gapped: 163367 Number of HSP's successfully gapped: 6839 Length of query: 245 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 113 Effective length of database: 1,817,122,223 Effective search space: 205334811199 Effective search space used: 205334811199 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)